Hyungwon Choi
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/metaArray |
| Branch: RELEASE_3_6 |
| Last Commit: 958e7e9 |
| Last Changed Date: 2017-10-30 12:39:16 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:18:07 -0400 (Thu, 12 Apr 2018).
| Package 816/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| metaArray 1.56.0 Hyungwon Choi
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: metaArray |
| Version: 1.56.0 |
| Command: rm -rf metaArray.buildbin-libdir && mkdir metaArray.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/metaArray_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=metaArray.buildbin-libdir --merge-multiarch metaArray_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL metaArray_1.56.0.zip && rm metaArray_1.56.0.tar.gz metaArray_1.56.0.zip |
| StartedAt: 2018-04-11 18:24:29 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:25:32 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 63.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf metaArray.buildbin-libdir && mkdir metaArray.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/metaArray_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=metaArray.buildbin-libdir --merge-multiarch metaArray_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL metaArray_1.56.0.zip && rm metaArray_1.56.0.tar.gz metaArray_1.56.0.zip
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install for i386
* installing *source* package 'metaArray' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c contr.c -o contr.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c dproc.c -o dproc.o
dproc.c: In function 'malloc_CH':
dproc.c:111:21: warning: variable 'num' set but not used [-Wunused-but-set-variable]
int i, j, nr, nc, num;
^
dproc.c: In function 'free_CH':
dproc.c:192:16: warning: unused variable 'nc' [-Wunused-variable]
int num, nr, nc;
^
dproc.c:192:12: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
int num, nr, nc;
^
dproc.c:192:7: warning: variable 'num' set but not used [-Wunused-but-set-variable]
int num, nr, nc;
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c dproc2.c -o dproc2.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c intcor.c -o intcor.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c lowess.c -o lowess.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c mmath.c -o mmath.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c perm.c -o perm.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O3 -Wall -std=gnu99 -mtune=generic -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:131:53: warning: variable 'shift' set but not used [-Wunused-but-set-variable]
double kappa_b, kappa_a, kappa_new, aaa, res_max, shift;
^
poe.c:120:20: warning: variable 'accept' set but not used [-Wunused-but-set-variable]
int nr,nc,tt,gg, accept;
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o metaArray.dll tmp.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/metaArray.buildbin-libdir/metaArray/libs/i386
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'metaArray'
finding HTML links ... done
Zscore html
em.draw html
find.init html
fit.em html
intcor html
logit html
mdata html
poe.em html
poe.mcmc html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'metaArray' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c contr.c -o contr.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c dproc.c -o dproc.o
dproc.c: In function 'malloc_CH':
dproc.c:111:21: warning: variable 'num' set but not used [-Wunused-but-set-variable]
int i, j, nr, nc, num;
^
dproc.c: In function 'free_CH':
dproc.c:192:16: warning: unused variable 'nc' [-Wunused-variable]
int num, nr, nc;
^
dproc.c:192:12: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
int num, nr, nc;
^
dproc.c:192:7: warning: variable 'num' set but not used [-Wunused-but-set-variable]
int num, nr, nc;
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c dproc2.c -o dproc2.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c intcor.c -o intcor.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c lowess.c -o lowess.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c mmath.c -o mmath.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c perm.c -o perm.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG -I"C:/local323/include" -DUSEDOUBLE -DWINDOWS -O2 -Wall -std=gnu99 -mtune=generic -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:131:53: warning: variable 'shift' set but not used [-Wunused-but-set-variable]
double kappa_b, kappa_a, kappa_new, aaa, res_max, shift;
^
poe.c:120:20: warning: variable 'accept' set but not used [-Wunused-but-set-variable]
int nr,nc,tt,gg, accept;
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o metaArray.dll tmp.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/metaArray.buildbin-libdir/metaArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metaArray' as metaArray_1.56.0.zip
* DONE (metaArray)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'metaArray' successfully unpacked and MD5 sums checked
In R CMD INSTALL