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This page was generated on 2018-04-12 13:24:12 -0400 (Thu, 12 Apr 2018).
| Package 565/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GenomicFiles 1.14.0 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK |  | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GenomicFiles |
| Version: 1.14.0 |
| Command: rm -rf GenomicFiles.buildbin-libdir && mkdir GenomicFiles.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GenomicFiles_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GenomicFiles.buildbin-libdir --merge-multiarch GenomicFiles_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GenomicFiles_1.14.0.zip && rm GenomicFiles_1.14.0.tar.gz GenomicFiles_1.14.0.zip |
| StartedAt: 2018-04-11 18:53:11 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:53:41 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 30.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### rm -rf GenomicFiles.buildbin-libdir && mkdir GenomicFiles.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/GenomicFiles_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=GenomicFiles.buildbin-libdir --merge-multiarch GenomicFiles_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL GenomicFiles_1.14.0.zip && rm GenomicFiles_1.14.0.tar.gz GenomicFiles_1.14.0.zip
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install for i386
* installing *source* package 'GenomicFiles' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'GenomicFiles'
finding HTML links ... done
GenomicFiles-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/GenomicFiles-class.Rd:111: missing file link 'SummarizedExperiment'
GenomicFiles-deprecated html
VcfStack-class html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:77: missing file link 'DataFrame'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:97: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:128: missing file link 'VcfFileList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:129: missing file link 'VcfFileList'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:132: missing file link 'seqinfo<-'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:138: missing file link 'seqlevelsStyle<-'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:142: missing file link 'DataFrame'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:147: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:154: missing file link 'GRanges'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:162: missing file link 'genotypeToSnpMatrix'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:172: missing file link 'ScanVcfParam'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:219: missing file link 'VcfFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/VcfStack-class.Rd:219: missing file link 'VcfFileList'
pack-methods html
reduceByFile-methods html
reduceByRange-methods html
reduceByYield html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/reduceByYield.Rd:12: missing file link 'BamFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/reduceByYield.Rd:29: missing file link 'BamFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/reduceByYield.Rd:121: missing file link 'BamFile'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKwjikt/R.INSTALL165c19ae1cda/GenomicFiles/man/reduceByYield.Rd:122: missing file link 'TabixFile'
registry-utils html
unpack-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'GenomicFiles' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicFiles' as GenomicFiles_1.14.0.zip
* DONE (GenomicFiles)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'GenomicFiles' successfully unpacked and MD5 sums checked
In R CMD INSTALL