Brad Nelms
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/CellMapper |
| Branch: RELEASE_3_6 |
| Last Commit: 19d7d16 |
| Last Changed Date: 2017-10-30 12:41:21 -0400 (Mon, 30 Oct 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:28:32 -0400 (Thu, 12 Apr 2018).
| Package 195/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CellMapper 1.4.0 Brad Nelms
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: CellMapper |
| Version: 1.4.0 |
| Command: rm -rf CellMapper.buildbin-libdir && mkdir CellMapper.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/CellMapper_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=CellMapper.buildbin-libdir --merge-multiarch CellMapper_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL CellMapper_1.4.0.zip && rm CellMapper_1.4.0.tar.gz CellMapper_1.4.0.zip |
| StartedAt: 2018-04-11 18:17:07 -0400 (Wed, 11 Apr 2018) |
| EndedAt: 2018-04-11 18:17:54 -0400 (Wed, 11 Apr 2018) |
| EllapsedTime: 47.1 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf CellMapper.buildbin-libdir && mkdir CellMapper.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/CellMapper_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=CellMapper.buildbin-libdir --merge-multiarch CellMapper_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL CellMapper_1.4.0.zip && rm CellMapper_1.4.0.tar.gz CellMapper_1.4.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 20183 100 20183 0 0 839k 0 --:--:-- --:--:-- --:--:-- 985k
install for i386
* installing *source* package 'CellMapper' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
** help
*** installing help indices
converting help for package 'CellMapper'
finding HTML links ... done
CMprep html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp0QWig3/R.INSTALLce029ff49bb/CellMapper/man/CMprep.Rd:51: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp0QWig3/R.INSTALLce029ff49bb/CellMapper/man/CMprep.Rd:52: missing file link 'CellMapperData'
CMsearch html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp0QWig3/R.INSTALLce029ff49bb/CellMapper/man/CMsearch.Rd:74: missing file link 'CellMapperData'
CellMapperList-class html
ExampleGeneLists html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp0QWig3/R.INSTALLce029ff49bb/CellMapper/man/ExampleGeneLists.Rd:51: missing file link 'CellMapperData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp0QWig3/R.INSTALLce029ff49bb/CellMapper/man/ExampleGeneLists.Rd:52: missing file link 'ExperimentHub'
ReplicateManuscript html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp0QWig3/R.INSTALLce029ff49bb/CellMapper/man/ReplicateManuscript.Rd:33: missing file link 'CellMapperData'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/Rtmp0QWig3/R.INSTALLce029ff49bb/CellMapper/man/ReplicateManuscript.Rd:34: missing file link 'ExperimentHub'
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
In R CMD INSTALL
install for x64
* installing *source* package 'CellMapper' ...
** testing if installed package can be loaded
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
* MD5 sums
packaged installation of 'CellMapper' as CellMapper_1.4.0.zip
* DONE (CellMapper)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'CellMapper' successfully unpacked and MD5 sums checked
In R CMD INSTALL