Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:21:26 -0400 (Thu, 12 Apr 2018).
Package 123/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
BiocGenerics 0.24.0 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | |||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: BiocGenerics |
Version: 0.24.0 |
Command: rm -rf BiocGenerics.buildbin-libdir BiocGenerics.Rcheck && mkdir BiocGenerics.buildbin-libdir BiocGenerics.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BiocGenerics.buildbin-libdir BiocGenerics_0.24.0.tar.gz >BiocGenerics.Rcheck\00install.out 2>&1 && cp BiocGenerics.Rcheck\00install.out BiocGenerics-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=BiocGenerics.buildbin-libdir --install="check:BiocGenerics-install.out" --force-multiarch --no-vignettes --timings BiocGenerics_0.24.0.tar.gz |
StartedAt: 2018-04-11 22:28:59 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 22:30:54 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 115.4 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: BiocGenerics.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf BiocGenerics.buildbin-libdir BiocGenerics.Rcheck && mkdir BiocGenerics.buildbin-libdir BiocGenerics.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BiocGenerics.buildbin-libdir BiocGenerics_0.24.0.tar.gz >BiocGenerics.Rcheck\00install.out 2>&1 && cp BiocGenerics.Rcheck\00install.out BiocGenerics-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=BiocGenerics.buildbin-libdir --install="check:BiocGenerics-install.out" --force-multiarch --no-vignettes --timings BiocGenerics_0.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/BiocGenerics.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'BiocGenerics/DESCRIPTION' ... OK * this is package 'BiocGenerics' version '0.24.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'BiocGenerics' can be installed ... WARNING Found the following significant warnings: Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:31: missing file link 'rbind' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:36: missing file link 'anyDuplicated' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:41: missing file link 'pmax' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:42: missing file link 'pmin' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:43: missing file link 'pmax.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:44: missing file link 'pmin.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:47: missing file link 'Reduce' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:48: missing file link 'Filter' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:49: missing file link 'Find' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:50: missing file link 'Map' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:51: missing file link 'Position' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:54: missing file link 'mget' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:57: missing file link 'grepl' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:62: missing file link 'sapply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:71: missing file link 'ncol' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:72: missing file link 'NROW' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:73: missing file link 'NCOL' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:81: missing file link 'rep.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:83: missing file link 'rownames' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:84: missing file link 'rownames<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:85: missing file link 'colnames' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:86: missing file link 'colnames<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:89: missing file link 'union' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:90: missing file link 'intersect' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:91: missing file link 'setdiff' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:96: missing file link 'start<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:97: missing file link 'end' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:98: missing file link 'end<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:99: missing file link 'width' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:100: missing file link 'width<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:138: missing file link 'clusterCall' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:140: missing file link 'clusterApplyLB' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:141: missing file link 'clusterEvalQ' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:142: missing file link 'clusterExport' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:143: missing file link 'clusterMap' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:144: missing file link 'clusterSplit' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:145: missing file link 'parLapply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:146: missing file link 'parSapply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:147: missing file link 'parApply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:148: missing file link 'parRapply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:149: missing file link 'parCapply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:150: missing file link 'parLapplyLB' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:151: missing file link 'parSapplyLB' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:158: missing file link 'annotation<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:163: missing file link 'dbfile' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:171: missing file link 'organism' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:172: missing file link 'organism<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:173: missing file link 'species' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:174: missing file link 'species<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:181: missing file link 'score<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:184: missing file link 'strand<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:185: missing file link 'invertStrand' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:224: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:18: missing file link 'pmax' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:38: missing file link 'pmax' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:44: missing file link 'pmax' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:53: missing file link 'pmax' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:59: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:62: missing file link 'pmax,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:64: missing file link 'Rle' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/IQR.Rd:44: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Ontology.Rd:26: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Ontology.Rd:29: missing file link 'Ontology,GOTerms-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Ontology.Rd:31: missing file link 'GOTerms' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/annotation.Rd:34: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/annotation.Rd:37: missing file link 'annotation,eSet-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/annotation.Rd:39: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/append.Rd:54: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/append.Rd:57: missing file link 'append,Vector,Vector-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/append.Rd:59: missing file link 'Vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.data.frame.Rd:50: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.data.frame.Rd:53: missing file link 'as.data.frame,DataFrame-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.data.frame.Rd:55: missing file link 'as.data.frame,Ranges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.data.frame.Rd:57: missing file link 'DataFrame' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.data.frame.Rd:57: missing file link 'Ranges' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:15: missing file link 'as.vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:30: missing file link 'as.vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:38: missing file link 'as.vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:47: missing file link 'as.vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:53: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:56: missing file link 'as.vector,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:57: missing file link 'as.vector,AtomicList-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:59: missing file link 'Rle' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:60: missing file link 'AtomicList' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/boxplot.Rd:44: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/boxplot.Rd:47: missing file link 'boxplot,FeatureSet-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/boxplot.Rd:49: missing file link 'FeatureSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/cbind.Rd:53: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/cbind.Rd:56: missing file link 'cbind,DataFrame-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/cbind.Rd:58: missing file link 'DataFrame' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/clusterApply.Rd:96: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:69: missing file link 'AnnotatedDataFrame' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:70: missing file link 'MIAME' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:71: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:84: missing file link 'combine,AnnotatedDataFrame,AnnotatedDataFrame-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:85: missing file link 'combine,AssayData,AssayData-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:86: missing file link 'combine,MIAME,MIAME-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:87: missing file link 'combine,eSet,eSet-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:96: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/dbconn.Rd:36: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/dbconn.Rd:39: missing file link 'dbconn,AnnotationDb-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/dbconn.Rd:41: missing file link 'dbconn' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/density.Rd:45: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/density.Rd:48: missing file link 'density,flowClust-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/do.call.Rd:61: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/duplicated.Rd:69: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/duplicated.Rd:72: missing file link 'duplicated,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/duplicated.Rd:74: missing file link 'Rle' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/eval.Rd:58: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/eval.Rd:61: missing file link 'eval,expression,Vector-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/eval.Rd:64: missing file link 'Vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/evalq.Rd:12: missing file link 'evalq' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/evalq.Rd:34: missing file link 'evalq' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/evalq.Rd:40: missing file link 'evalq' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/evalq.Rd:45: missing file link 'evalq' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/fileName.Rd:29: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/fileName.Rd:32: missing file link 'fileName,MSmap-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/fileName.Rd:34: missing file link 'MSmap' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:26: missing file link 'Reduce' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:43: missing file link 'Reduce' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:55: missing file link 'Reduce' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:64: missing file link 'Reduce' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:70: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:73: missing file link 'Reduce,List-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:75: missing file link 'List' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/get.Rd:64: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/get.Rd:67: missing file link 'get,ANY,Bimap,missing-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/grep.Rd:56: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/image.Rd:46: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/image.Rd:49: missing file link 'image,FeatureSet-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/image.Rd:51: missing file link 'FeatureSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/is.unsorted.Rd:63: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/is.unsorted.Rd:66: missing file link 'is.unsorted,GenomicRanges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/is.unsorted.Rd:69: missing file link 'GenomicRanges' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lapply.Rd:61: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lapply.Rd:64: missing file link 'lapply,List-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lapply.Rd:66: missing file link 'List' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lengths.Rd:44: missing file link 'Vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lengths.Rd:45: missing file link 'elementNROWS' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lengths.Rd:64: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lengths.Rd:67: missing file link 'lengths,Vector-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lengths.Rd:69: missing file link 'Vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/mad.Rd:46: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/mapply.Rd:9: missing file link 'sapply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/mapply.Rd:54: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/match.Rd:61: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/match.Rd:64: missing file link 'match,Hits,Hits-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/match.Rd:66: missing file link 'Hits' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/matrix-summary.Rd:53: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/mean.Rd:46: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/mean.Rd:49: missing file link 'mean,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/mean.Rd:51: missing file link 'Rle' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/normalize.Rd:38: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/normalize.Rd:41: missing file link 'normalize,AffyBatch-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/normalize.Rd:42: missing file link 'normalize,FeatureSet-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/normalize.Rd:44: missing file link 'AffyBatch' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/normalize.Rd:44: missing file link 'FeatureSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/nrow.Rd:50: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/nrow.Rd:53: missing file link 'nrow,DataFrame-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/nrow.Rd:55: missing file link 'DataFrame' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/order.Rd:73: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/order.Rd:76: missing file link 'order,Ranges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/order.Rd:78: missing file link 'Ranges' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/organism_species.Rd:63: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/organism_species.Rd:66: missing file link 'organism,character-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/organism_species.Rd:67: missing file link 'organism,chromLocation-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/organism_species.Rd:69: missing file link 'chromLocation' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/organism_species.Rd:72: missing file link 'species,AnnotationDb-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/organism_species.Rd:74: missing file link 'AnnotationDb' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/paste.Rd:49: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/paste.Rd:52: missing file link 'paste,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/paste.Rd:54: missing file link 'Rle' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/plotMA.Rd:35: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/plotPCA.Rd:36: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rank.Rd:70: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rank.Rd:73: missing file link 'rank,Vector-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rank.Rd:75: missing file link 'Vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/relist.Rd:46: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/relist.Rd:49: missing file link 'relist,ANY,List-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/relist.Rd:51: missing file link 'List' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:12: missing file link 'rep.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:27: missing file link 'rep.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:33: missing file link 'rep.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:42: missing file link 'rep.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:48: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:51: missing file link 'rep.int,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:53: missing file link 'Rle' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/residuals.Rd:41: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/residuals.Rd:44: missing file link 'residuals,PLMset-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/residuals.Rd:46: missing file link 'PLMset' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:17: missing file link 'rownames' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:36: missing file link 'rownames' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:50: missing file link 'rownames' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:59: missing file link 'rownames' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:66: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:69: missing file link 'rownames,DataFrame-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:71: missing file link 'DataFrame' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/score.Rd:34: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/score.Rd:37: missing file link 'score,GenomicRanges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/score.Rd:39: missing file link 'GenomicRanges' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:17: missing file link 'union' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:39: missing file link 'union' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:57: missing file link 'GenomicRanges' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:65: missing file link 'union' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:71: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:74: missing file link 'union,GenomicRanges,GenomicRanges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:77: missing file link 'GenomicRanges' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sort.Rd:62: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sort.Rd:65: missing file link 'sort,Vector-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sort.Rd:67: missing file link 'Vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/start.Rd:57: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/start.Rd:60: missing file link 'start,IRanges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/start.Rd:62: missing file link 'IRanges' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/strand.Rd:73: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/strand.Rd:76: missing file link 'strand,GRanges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/strand.Rd:78: missing file link 'GRanges' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/subset.Rd:46: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/subset.Rd:49: missing file link 'subset,DataTable-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/subset.Rd:51: missing file link 'DataTable' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/t.Rd:44: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/t.Rd:47: missing file link 't,Hits-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/t.Rd:49: missing file link 'Hits' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/table.Rd:46: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/table.Rd:49: missing file link 'table,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/table.Rd:51: missing file link 'Rle' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/tapply.Rd:64: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/tapply.Rd:67: missing file link 'tapply,Vector,ANY-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/tapply.Rd:69: missing file link 'Vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unique.Rd:57: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unique.Rd:60: missing file link 'unique,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unique.Rd:62: missing file link 'Rle' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unlist.Rd:51: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unlist.Rd:54: missing file link 'unlist,List-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unlist.Rd:56: missing file link 'List' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:14: missing file link 'unsplit' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:33: missing file link 'unsplit' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:39: missing file link 'unsplit' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:48: missing file link 'unsplit' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:54: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:57: missing file link 'unsplit,List-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:59: missing file link 'List' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/updateObject.Rd:130: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/var.Rd:14: missing file link 'var' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/var.Rd:32: missing file link 'var' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/var.Rd:36: missing file link 'var' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/var.Rd:45: missing file link 'var' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/var.Rd:51: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/weights.Rd:47: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/weights.Rd:50: missing file link 'weights,PLMset-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/weights.Rd:52: missing file link 'PLMset' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/which.Rd:57: missing file link 'NumericList' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/which.Rd:69: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/which.Rd:72: missing file link 'which.max,NumericList-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/which.Rd:75: missing file link 'NumericList' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/xtabs.Rd:52: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/xtabs.Rd:55: missing file link 'xtabs,DataTable-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/xtabs.Rd:57: missing file link 'DataTable' See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/BiocGenerics.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: 'methods' 'utils' 'graphics' 'stats' 'parallel' A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'RUnit' in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'rep': 'rep.int' The \usage entries for S3 methods should use the \method markup and not their full name. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed testPackage 7.61 0.00 7.61 plotMA 5.20 0.15 5.69 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed testPackage 12.75 0.03 12.78 plotMA 5.80 0.16 5.95 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'run_unitTests.R' OK ** running tests for arch 'x64' ... Running 'run_unitTests.R' OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 3 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/BiocGenerics.Rcheck/00check.log' for details.
BiocGenerics.Rcheck/00install.out
install for i386 * installing *source* package 'BiocGenerics' ... ** R ** inst ** preparing package for lazy loading Creating a new generic function for 'append' in package 'BiocGenerics' Creating a new generic function for 'as.data.frame' in package 'BiocGenerics' Creating a new generic function for 'cbind' in package 'BiocGenerics' Creating a new generic function for 'rbind' in package 'BiocGenerics' Creating a new generic function for 'do.call' in package 'BiocGenerics' Creating a new generic function for 'duplicated' in package 'BiocGenerics' Creating a new generic function for 'anyDuplicated' in package 'BiocGenerics' Creating a new generic function for 'eval' in package 'BiocGenerics' Creating a new generic function for 'pmax' in package 'BiocGenerics' Creating a new generic function for 'pmin' in package 'BiocGenerics' Creating a new generic function for 'pmax.int' in package 'BiocGenerics' Creating a new generic function for 'pmin.int' in package 'BiocGenerics' Creating a new generic function for 'Reduce' in package 'BiocGenerics' Creating a new generic function for 'Filter' in package 'BiocGenerics' Creating a new generic function for 'Find' in package 'BiocGenerics' Creating a new generic function for 'Map' in package 'BiocGenerics' Creating a new generic function for 'Position' in package 'BiocGenerics' Creating a new generic function for 'get' in package 'BiocGenerics' Creating a new generic function for 'mget' in package 'BiocGenerics' Creating a new generic function for 'grep' in package 'BiocGenerics' Creating a new generic function for 'grepl' in package 'BiocGenerics' Creating a new generic function for 'is.unsorted' in package 'BiocGenerics' Creating a new generic function for 'lapply' in package 'BiocGenerics' Creating a new generic function for 'sapply' in package 'BiocGenerics' Creating a new generic function for 'lengths' in package 'BiocGenerics' Creating a new generic function for 'mapply' in package 'BiocGenerics' Creating a new generic function for 'match' in package 'BiocGenerics' Creating a new generic function for 'rowSums' in package 'BiocGenerics' Creating a new generic function for 'colSums' in package 'BiocGenerics' Creating a new generic function for 'rowMeans' in package 'BiocGenerics' Creating a new generic function for 'colMeans' in package 'BiocGenerics' Creating a new generic function for 'order' in package 'BiocGenerics' Creating a new generic function for 'paste' in package 'BiocGenerics' Creating a new generic function for 'rank' in package 'BiocGenerics' Creating a new generic function for 'rownames' in package 'BiocGenerics' Creating a new generic function for 'colnames' in package 'BiocGenerics' Creating a new generic function for 'union' in package 'BiocGenerics' Creating a new generic function for 'intersect' in package 'BiocGenerics' Creating a new generic function for 'setdiff' in package 'BiocGenerics' Creating a new generic function for 'sort' in package 'BiocGenerics' Creating a new generic function for 'table' in package 'BiocGenerics' Creating a new generic function for 'tapply' in package 'BiocGenerics' Creating a new generic function for 'unique' in package 'BiocGenerics' Creating a new generic function for 'unsplit' in package 'BiocGenerics' Creating a new generic function for 'var' in package 'BiocGenerics' Creating a new generic function for 'sd' in package 'BiocGenerics' Creating a new generic function for 'which' in package 'BiocGenerics' Creating a new generic function for 'which.max' in package 'BiocGenerics' Creating a new generic function for 'which.min' in package 'BiocGenerics' Creating a new generic function for 'IQR' in package 'BiocGenerics' Creating a new generic function for 'mad' in package 'BiocGenerics' Creating a new generic function for 'xtabs' in package 'BiocGenerics' Creating a new generic function for 'clusterCall' in package 'BiocGenerics' Creating a new generic function for 'clusterApply' in package 'BiocGenerics' Creating a new generic function for 'clusterApplyLB' in package 'BiocGenerics' Creating a new generic function for 'clusterEvalQ' in package 'BiocGenerics' Creating a new generic function for 'clusterExport' in package 'BiocGenerics' Creating a new generic function for 'clusterMap' in package 'BiocGenerics' Creating a new generic function for 'parLapply' in package 'BiocGenerics' Creating a new generic function for 'parSapply' in package 'BiocGenerics' Creating a new generic function for 'parApply' in package 'BiocGenerics' Creating a new generic function for 'parRapply' in package 'BiocGenerics' Creating a new generic function for 'parCapply' in package 'BiocGenerics' Creating a new generic function for 'parLapplyLB' in package 'BiocGenerics' Creating a new generic function for 'parSapplyLB' in package 'BiocGenerics' ** help *** installing help indices converting help for package 'BiocGenerics' finding HTML links ... done BiocGenerics-package html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:31: missing file link 'rbind' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:36: missing file link 'anyDuplicated' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:41: missing file link 'pmax' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:42: missing file link 'pmin' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:43: missing file link 'pmax.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:44: missing file link 'pmin.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:47: missing file link 'Reduce' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:48: missing file link 'Filter' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:49: missing file link 'Find' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:50: missing file link 'Map' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:51: missing file link 'Position' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:54: missing file link 'mget' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:57: missing file link 'grepl' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:62: missing file link 'sapply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:71: missing file link 'ncol' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:72: missing file link 'NROW' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:73: missing file link 'NCOL' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:81: missing file link 'rep.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:83: missing file link 'rownames' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:84: missing file link 'rownames<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:85: missing file link 'colnames' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:86: missing file link 'colnames<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:89: missing file link 'union' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:90: missing file link 'intersect' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:91: missing file link 'setdiff' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:96: missing file link 'start<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:97: missing file link 'end' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:98: missing file link 'end<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:99: missing file link 'width' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:100: missing file link 'width<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:138: missing file link 'clusterCall' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:140: missing file link 'clusterApplyLB' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:141: missing file link 'clusterEvalQ' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:142: missing file link 'clusterExport' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:143: missing file link 'clusterMap' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:144: missing file link 'clusterSplit' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:145: missing file link 'parLapply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:146: missing file link 'parSapply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:147: missing file link 'parApply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:148: missing file link 'parRapply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:149: missing file link 'parCapply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:150: missing file link 'parLapplyLB' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:151: missing file link 'parSapplyLB' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:158: missing file link 'annotation<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:163: missing file link 'dbfile' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:171: missing file link 'organism' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:172: missing file link 'organism<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:173: missing file link 'species' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:174: missing file link 'species<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:181: missing file link 'score<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:184: missing file link 'strand<-' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:185: missing file link 'invertStrand' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/BiocGenerics-package.Rd:224: missing file link 'selectMethod' Extremes html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:18: missing file link 'pmax' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:38: missing file link 'pmax' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:44: missing file link 'pmax' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:53: missing file link 'pmax' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:59: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:62: missing file link 'pmax,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Extremes.Rd:64: missing file link 'Rle' IQR html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/IQR.Rd:44: missing file link 'selectMethod' Ontology html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Ontology.Rd:26: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Ontology.Rd:29: missing file link 'Ontology,GOTerms-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/Ontology.Rd:31: missing file link 'GOTerms' S3-classes-as-S4-classes html annotation html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/annotation.Rd:34: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/annotation.Rd:37: missing file link 'annotation,eSet-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/annotation.Rd:39: missing file link 'eSet' append html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/append.Rd:54: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/append.Rd:57: missing file link 'append,Vector,Vector-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/append.Rd:59: missing file link 'Vector' as.data.frame html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.data.frame.Rd:50: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.data.frame.Rd:53: missing file link 'as.data.frame,DataFrame-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.data.frame.Rd:55: missing file link 'as.data.frame,Ranges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.data.frame.Rd:57: missing file link 'DataFrame' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.data.frame.Rd:57: missing file link 'Ranges' as.vector html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:15: missing file link 'as.vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:30: missing file link 'as.vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:38: missing file link 'as.vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:47: missing file link 'as.vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:53: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:56: missing file link 'as.vector,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:57: missing file link 'as.vector,AtomicList-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:59: missing file link 'Rle' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/as.vector.Rd:60: missing file link 'AtomicList' boxplot html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/boxplot.Rd:44: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/boxplot.Rd:47: missing file link 'boxplot,FeatureSet-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/boxplot.Rd:49: missing file link 'FeatureSet' cbind html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/cbind.Rd:53: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/cbind.Rd:56: missing file link 'cbind,DataFrame-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/cbind.Rd:58: missing file link 'DataFrame' clusterApply html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/clusterApply.Rd:96: missing file link 'selectMethod' combine html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:69: missing file link 'AnnotatedDataFrame' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:70: missing file link 'MIAME' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:71: missing file link 'eSet' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:84: missing file link 'combine,AnnotatedDataFrame,AnnotatedDataFrame-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:85: missing file link 'combine,AssayData,AssayData-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:86: missing file link 'combine,MIAME,MIAME-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:87: missing file link 'combine,eSet,eSet-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/combine.Rd:96: missing file link 'selectMethod' dbconn html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/dbconn.Rd:36: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/dbconn.Rd:39: missing file link 'dbconn,AnnotationDb-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/dbconn.Rd:41: missing file link 'dbconn' density html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/density.Rd:45: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/density.Rd:48: missing file link 'density,flowClust-method' dge html do.call html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/do.call.Rd:61: missing file link 'selectMethod' duplicated html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/duplicated.Rd:69: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/duplicated.Rd:72: missing file link 'duplicated,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/duplicated.Rd:74: missing file link 'Rle' eval html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/eval.Rd:58: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/eval.Rd:61: missing file link 'eval,expression,Vector-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/eval.Rd:64: missing file link 'Vector' evalq html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/evalq.Rd:12: missing file link 'evalq' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/evalq.Rd:34: missing file link 'evalq' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/evalq.Rd:40: missing file link 'evalq' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/evalq.Rd:45: missing file link 'evalq' fileName html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/fileName.Rd:29: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/fileName.Rd:32: missing file link 'fileName,MSmap-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/fileName.Rd:34: missing file link 'MSmap' funprog html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:26: missing file link 'Reduce' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:43: missing file link 'Reduce' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:55: missing file link 'Reduce' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:64: missing file link 'Reduce' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:70: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:73: missing file link 'Reduce,List-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/funprog.Rd:75: missing file link 'List' get html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/get.Rd:64: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/get.Rd:67: missing file link 'get,ANY,Bimap,missing-method' grep html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/grep.Rd:56: missing file link 'selectMethod' image html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/image.Rd:46: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/image.Rd:49: missing file link 'image,FeatureSet-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/image.Rd:51: missing file link 'FeatureSet' is.unsorted html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/is.unsorted.Rd:63: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/is.unsorted.Rd:66: missing file link 'is.unsorted,GenomicRanges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/is.unsorted.Rd:69: missing file link 'GenomicRanges' lapply html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lapply.Rd:61: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lapply.Rd:64: missing file link 'lapply,List-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lapply.Rd:66: missing file link 'List' lengths html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lengths.Rd:44: missing file link 'Vector' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lengths.Rd:45: missing file link 'elementNROWS' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lengths.Rd:64: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lengths.Rd:67: missing file link 'lengths,Vector-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/lengths.Rd:69: missing file link 'Vector' mad html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/mad.Rd:46: missing file link 'selectMethod' mapply html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/mapply.Rd:9: missing file link 'sapply' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/mapply.Rd:54: missing file link 'selectMethod' match html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/match.Rd:61: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/match.Rd:64: missing file link 'match,Hits,Hits-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/match.Rd:66: missing file link 'Hits' matrix-summary html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/matrix-summary.Rd:53: missing file link 'selectMethod' mean html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/mean.Rd:46: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/mean.Rd:49: missing file link 'mean,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/mean.Rd:51: missing file link 'Rle' normalize html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/normalize.Rd:38: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/normalize.Rd:41: missing file link 'normalize,AffyBatch-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/normalize.Rd:42: missing file link 'normalize,FeatureSet-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/normalize.Rd:44: missing file link 'AffyBatch' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/normalize.Rd:44: missing file link 'FeatureSet' nrow html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/nrow.Rd:50: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/nrow.Rd:53: missing file link 'nrow,DataFrame-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/nrow.Rd:55: missing file link 'DataFrame' order html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/order.Rd:73: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/order.Rd:76: missing file link 'order,Ranges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/order.Rd:78: missing file link 'Ranges' organism_species html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/organism_species.Rd:63: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/organism_species.Rd:66: missing file link 'organism,character-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/organism_species.Rd:67: missing file link 'organism,chromLocation-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/organism_species.Rd:69: missing file link 'chromLocation' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/organism_species.Rd:72: missing file link 'species,AnnotationDb-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/organism_species.Rd:74: missing file link 'AnnotationDb' paste html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/paste.Rd:49: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/paste.Rd:52: missing file link 'paste,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/paste.Rd:54: missing file link 'Rle' plotMA html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/plotMA.Rd:35: missing file link 'selectMethod' plotPCA html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/plotPCA.Rd:36: missing file link 'selectMethod' rank html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rank.Rd:70: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rank.Rd:73: missing file link 'rank,Vector-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rank.Rd:75: missing file link 'Vector' relist html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/relist.Rd:46: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/relist.Rd:49: missing file link 'relist,ANY,List-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/relist.Rd:51: missing file link 'List' rep html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:12: missing file link 'rep.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:27: missing file link 'rep.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:33: missing file link 'rep.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:42: missing file link 'rep.int' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:48: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:51: missing file link 'rep.int,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/rep.Rd:53: missing file link 'Rle' residuals html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/residuals.Rd:41: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/residuals.Rd:44: missing file link 'residuals,PLMset-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/residuals.Rd:46: missing file link 'PLMset' row_colnames html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:17: missing file link 'rownames' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:36: missing file link 'rownames' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:50: missing file link 'rownames' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:59: missing file link 'rownames' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:66: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:69: missing file link 'rownames,DataFrame-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/row_colnames.Rd:71: missing file link 'DataFrame' score html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/score.Rd:34: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/score.Rd:37: missing file link 'score,GenomicRanges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/score.Rd:39: missing file link 'GenomicRanges' sets html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:17: missing file link 'union' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:39: missing file link 'union' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:57: missing file link 'GenomicRanges' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:65: missing file link 'union' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:71: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:74: missing file link 'union,GenomicRanges,GenomicRanges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sets.Rd:77: missing file link 'GenomicRanges' sort html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sort.Rd:62: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sort.Rd:65: missing file link 'sort,Vector-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/sort.Rd:67: missing file link 'Vector' start html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/start.Rd:57: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/start.Rd:60: missing file link 'start,IRanges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/start.Rd:62: missing file link 'IRanges' strand html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/strand.Rd:73: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/strand.Rd:76: missing file link 'strand,GRanges-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/strand.Rd:78: missing file link 'GRanges' subset html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/subset.Rd:46: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/subset.Rd:49: missing file link 'subset,DataTable-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/subset.Rd:51: missing file link 'DataTable' t html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/t.Rd:44: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/t.Rd:47: missing file link 't,Hits-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/t.Rd:49: missing file link 'Hits' table html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/table.Rd:46: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/table.Rd:49: missing file link 'table,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/table.Rd:51: missing file link 'Rle' tapply html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/tapply.Rd:64: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/tapply.Rd:67: missing file link 'tapply,Vector,ANY-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/tapply.Rd:69: missing file link 'Vector' testPackage html unique html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unique.Rd:57: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unique.Rd:60: missing file link 'unique,Rle-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unique.Rd:62: missing file link 'Rle' unlist html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unlist.Rd:51: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unlist.Rd:54: missing file link 'unlist,List-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unlist.Rd:56: missing file link 'List' unsplit html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:14: missing file link 'unsplit' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:33: missing file link 'unsplit' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:39: missing file link 'unsplit' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:48: missing file link 'unsplit' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:54: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:57: missing file link 'unsplit,List-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/unsplit.Rd:59: missing file link 'List' updateObject html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/updateObject.Rd:130: missing file link 'selectMethod' var html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/var.Rd:14: missing file link 'var' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/var.Rd:32: missing file link 'var' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/var.Rd:36: missing file link 'var' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/var.Rd:45: missing file link 'var' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/var.Rd:51: missing file link 'selectMethod' weights html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/weights.Rd:47: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/weights.Rd:50: missing file link 'weights,PLMset-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/weights.Rd:52: missing file link 'PLMset' which html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/which.Rd:57: missing file link 'NumericList' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/which.Rd:69: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/which.Rd:72: missing file link 'which.max,NumericList-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/which.Rd:75: missing file link 'NumericList' xtabs html Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/xtabs.Rd:52: missing file link 'selectMethod' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/xtabs.Rd:55: missing file link 'xtabs,DataTable-method' Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpwvnQoR/R.INSTALLcd0578dfa5/BiocGenerics/man/xtabs.Rd:57: missing file link 'DataTable' ** building package indices ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'BiocGenerics' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'BiocGenerics' as BiocGenerics_0.24.0.zip * DONE (BiocGenerics) In R CMD INSTALL In R CMD INSTALL
BiocGenerics.Rcheck/tests_i386/run_unitTests.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > require("BiocGenerics") || stop("unable to load BiocGenerics package") Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, cbind, colMeans, colSums, colnames, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min [1] TRUE > BiocGenerics:::.test() RUNIT TEST PROTOCOL -- Wed Apr 11 22:30:44 2018 *********************************************** Number of test functions: 24 Number of errors: 0 Number of failures: 0 1 Test Suite : BiocGenerics RUnit Tests - 24 test functions, 0 errors, 0 failures Number of test functions: 24 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 2.03 0.04 2.06 |
BiocGenerics.Rcheck/tests_x64/run_unitTests.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > require("BiocGenerics") || stop("unable to load BiocGenerics package") Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, cbind, colMeans, colSums, colnames, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min [1] TRUE > BiocGenerics:::.test() RUNIT TEST PROTOCOL -- Wed Apr 11 22:30:46 2018 *********************************************** Number of test functions: 24 Number of errors: 0 Number of failures: 0 1 Test Suite : BiocGenerics RUnit Tests - 24 test functions, 0 errors, 0 failures Number of test functions: 24 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 2.31 0.07 2.37 |
BiocGenerics.Rcheck/examples_i386/BiocGenerics-Ex.timings
|
BiocGenerics.Rcheck/examples_x64/BiocGenerics-Ex.timings
|