MAIT 1.11.1
Francesc Fernandez-Albert
| Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MAIT | | Last Changed Rev: 131484 / Revision: 131943 | | Last Changed Date: 2017-07-21 11:56:42 -0400 (Fri, 21 Jul 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | ERROR | skipped | | |
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | ERROR | skipped | skipped | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | [ ERROR ] | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MAIT
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* checking for file ‘MAIT/DESCRIPTION’ ... OK
* preparing ‘MAIT’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: CAMERA
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: xcms
Loading required package: BiocParallel
Loading required package: MSnbase
Loading required package: mzR
Loading required package: Rcpp
Loading required package: ProtGenerics
This is MSnbase version 2.3.9
Read '?MSnbase' and references therein for information
about the package and how to get started.
Attaching package: ‘MSnbase’
The following object is masked from ‘package:stats’:
smooth
The following object is masked from ‘package:base’:
trimws
This is xcms version 2.99.6
Attaching package: ‘xcms’
The following object is masked from ‘package:stats’:
sigma
Loading required package: pls
Attaching package: ‘pls’
The following object is masked from ‘package:stats’:
loadings
Attaching package: ‘MAIT’
The following objects are masked from ‘package:pls’:
loadings, scores
The following object is masked from ‘package:mzR’:
model
The following object is masked from ‘package:BiocGenerics’:
plotPCA
The following object is masked from ‘package:stats’:
loadings
Processing 3201 mz slices ... OK
Performing retention time correction using 1 peak groups.
Warning in do_adjustRtime_peakGroups(peaks = peakmat, peakIndex = object@groupidx, :
Too few peak groups for 'loess', reverting to linear method
Error: processing vignette 'MAIT_Vignette.Rnw' failed with diagnostics:
chunk 2 (label = sampleProcessing)
Error in do_adjustRtime_peakGroups(peaks = peakmat, peakIndex = object@groupidx, :
Not enough peak groups even for linear smoothing available!
Execution halted