BioC 3.6: CHECK report for GSEABase on tokay1

Package: GSEABase

Version: 1.39.0

Command: rm -rf GSEABase.buildbin-libdir GSEABase.Rcheck && mkdir GSEABase.buildbin-libdir GSEABase.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSEABase.buildbin-libdir GSEABase_1.39.0.tar.gz >GSEABase.Rcheck\00install.out 2>&1 && cp GSEABase.Rcheck\00install.out GSEABase-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=GSEABase.buildbin-libdir --install="check:GSEABase-install.out" --force-multiarch --no-vignettes --timings GSEABase_1.39.0.tar.gz

StartedAt: 2017-08-16 00:03:46 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 00:07:50 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 243.5 seconds

RetCode: 0

Status:  OK

CheckDir: GSEABase.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf GSEABase.buildbin-libdir GSEABase.Rcheck && mkdir GSEABase.buildbin-libdir GSEABase.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSEABase.buildbin-libdir GSEABase_1.39.0.tar.gz >GSEABase.Rcheck\00install.out 2>&1 && cp GSEABase.Rcheck\00install.out GSEABase-install.out  &&  C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=GSEABase.buildbin-libdir --install="check:GSEABase-install.out" --force-multiarch --no-vignettes --timings GSEABase_1.39.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/GSEABase.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSEABase/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GSEABase' version '1.39.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSEABase' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'unitTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'unitTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'GSEABase' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'GSEABase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSEABase' as GSEABase_1.39.0.zip
* DONE (GSEABase)

name	user	system	elapsed
CollectionType-class	0.79	0.03	0.83
CollectionType-constructors	0.39	0.00	0.39
GSEABase-package	0.11	0.01	0.13
GeneColorSet-class	0.10	0.02	0.11
GeneIdentifierType-class	0.08	0.00	0.08
GeneIdentifierType-constructors	0.21	0.02	0.43
GeneSet-class	0.29	0.00	0.28
GeneSet-methods	0.05	0.00	0.05
GeneSetCollection-class	0.01	0.00	0.01
GeneSetCollection-methods	2.04	0.06	2.10
OBOCollection-class	0.12	0.00	0.12
getOBOCollection	0.05	0.01	0.06
getObjects	0.03	0.00	0.04
goSlim-methods	0.55	0.04	0.95
incidence-methods	0.01	0.00	0.01

name	user	system	elapsed
CollectionType-class	1.02	0.01	1.03
CollectionType-constructors	0.47	0.00	0.47
GSEABase-package	0.13	0.00	0.12
GeneColorSet-class	0.32	0.00	0.33
GeneIdentifierType-class	0.08	0.00	0.07
GeneIdentifierType-constructors	0.17	0.05	0.22
GeneSet-class	0.16	0.00	0.16
GeneSet-methods	0.06	0.00	0.06
GeneSetCollection-class	0	0	0
GeneSetCollection-methods	2.52	0.20	2.72
OBOCollection-class	0.17	0.00	0.17
getOBOCollection	0.06	0.00	0.06
getObjects	0.03	0.00	0.04
goSlim-methods	0.61	0.00	0.61
incidence-methods	0.02	0.00	0.01