pathprint 1.4.0
Sokratis Kariotis
| Snapshot Date: 2017-10-16 17:00:06 -0400 (Mon, 16 Oct 2017) | | URL: https://git.bioconductor.org/packages/pathprint | | Branch: RELEASE_3_5 | | Last Commit: 97bfaf7 | | Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | ERROR | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK |  |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf pathprint.buildbin-libdir pathprint.Rcheck && mkdir pathprint.buildbin-libdir pathprint.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pathprint.buildbin-libdir pathprint_1.4.0.tar.gz >pathprint.Rcheck\00install.out 2>&1 && cp pathprint.Rcheck\00install.out pathprint-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=pathprint.buildbin-libdir --install="check:pathprint-install.out" --force-multiarch --no-vignettes --timings pathprint_1.4.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/pathprint.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pathprint/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pathprint' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'pathprint' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
exprs2fingerprint: no visible binding for global variable 'chipframe'
exprs2fingerprint: no visible binding for global variable 'genesets'
thresholdFingerprint: no visible binding for global variable
'platform.thresholds'
Undefined global functions or variables:
chipframe genesets platform.thresholds
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
single.chip.enrichment 48.53 0.59 49.12
diffPathways 31.92 2.47 34.46
consensusDistance 18.36 1.61 20.72
pathprint-package 15.88 0.68 16.56
consensusFingerprint 14.43 0.72 15.15
thresholdFingerprint 13.95 0.69 14.64
pluripotents.frame 11.38 0.52 11.89
customCDFAnn 11.02 0.64 11.70
exprs2fingerprint 8.68 0.67 9.35
platform.thresholds 5.76 0.49 6.25
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
single.chip.enrichment 45.69 1.31 47.02
diffPathways 32.40 0.78 33.18
consensusDistance 22.42 1.11 23.53
pathprint-package 15.03 0.54 15.58
consensusFingerprint 14.16 1.03 15.18
thresholdFingerprint 13.53 0.52 14.05
pluripotents.frame 9.97 0.66 10.62
customCDFAnn 8.63 0.80 9.43
exprs2fingerprint 8.49 0.60 9.08
platform.thresholds 5.14 0.53 5.68
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.5-bioc/meat/pathprint.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'pathprint' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'pathprint' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pathprint' as pathprint_1.4.0.zip
* DONE (pathprint)