pathprint 1.4.0
Sokratis Kariotis
| Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017) | | URL: https://git.bioconductor.org/packages/pathprint | | Branch: RELEASE_3_5 | | Last Commit: 97bfaf7 | | Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | [ ERROR ] | skipped | | |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |  |
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### Running command:
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### /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pathprint
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* checking for file ‘pathprint/DESCRIPTION’ ... OK
* preparing ‘pathprint’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall,
clusterEvalQ, clusterExport, clusterMap,
parApply, parCapply, parLapply, parLapplyLB,
parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce,
anyDuplicated, append, as.data.frame, cbind,
colMeans, colSums, colnames, do.call, duplicated,
eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, lengths, mapply, match,
mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rowMeans, rowSums,
rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max,
which.min
Welcome to Bioconductor
Vignettes contain introductory material; view
with 'browseVignettes()'. To cite Bioconductor,
see 'citation("Biobase")', and for packages
'citation("pkgname")'.
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
https://ftp.ncbi.nlm.nih.gov/geo/series/GSE26nnn/GSE26946/matrix/
OK
Found 2 file(s)
/geo/series/GSE26nnn/GSE26946/
Warning in download.file(sprintf("https://ftp.ncbi.nlm.nih.gov/geo/series/%s/%s/matrix/%s", :
URL https://ftp.ncbi.nlm.nih.gov/geo/series/GSE26nnn/GSE26946/matrix//geo/series/GSE26nnn/GSE26946/: cannot open destfile '/tmp/RtmpBJ81pv//geo/series/GSE26nnn/GSE26946/', reason 'No such file or directory'
Warning in download.file(sprintf("https://ftp.ncbi.nlm.nih.gov/geo/series/%s/%s/matrix/%s", :
download had nonzero exit status
Warning in file(con, "r") :
cannot open file '/tmp/RtmpBJ81pv//geo/series/GSE26nnn/GSE26946/': No such file or directory
Error: processing vignette 'exampleFingerprint.Rnw' failed with diagnostics:
chunk 2 (label = data)
Error in file(con, "r") : cannot open the connection
Execution halted