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BioC 3.5: INSTALL report for S4Vectors on veracruz2

This page was generated on 2017-10-18 14:32:03 -0400 (Wed, 18 Oct 2017).

Package 1170/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
S4Vectors 0.14.7
Bioconductor Package Maintainer
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/S4Vectors
Branch: RELEASE_3_5
Last Commit: c00fffd
Last Changed Date: 2017-10-06 22:04:46 -0400 (Fri, 06 Oct 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  ERROR  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64 [ ERROR ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: S4Vectors
Version: 0.14.7
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL S4Vectors
StartedAt: 2017-10-17 18:00:43 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 18:00:48 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 5.5 seconds
RetCode: 1
Status:  ERROR 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL S4Vectors
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library’
* installing *source* package ‘S4Vectors’ ...
** libs
make: Nothing to be done for `all'.
installing to /Library/Frameworks/R.framework/Versions/3.4/Resources/library/S4Vectors/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘S4Vectors’
Creating a new generic function for ‘expand.grid’ in package ‘S4Vectors’
Creating a generic function for ‘%in%’ from package ‘base’ in package ‘S4Vectors’
Creating a new generic function for ‘findMatches’ in package ‘S4Vectors’
Creating a generic function for ‘setequal’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘tabulate’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘cov’ from package ‘stats’ in package ‘S4Vectors’
Creating a generic function for ‘cor’ from package ‘stats’ in package ‘S4Vectors’
Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘S4Vectors’
Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘S4Vectors’
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘substr’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘substring’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘chartr’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘tolower’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘toupper’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘sub’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘gsub’ from package ‘base’ in package ‘S4Vectors’
in method for ‘coerce’ with signature ‘"data.table","DataFrame"’: no definition for class “data.table”
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘RleTricks.Rnw’ using ‘UTF-8’ 
   ‘S4QuickOverview.Rnw’ using ‘UTF-8’ 
** testing if installed package can be loaded
Error: package or namespace load failed for ‘S4Vectors’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/S4Vectors/libs/S4Vectors.so':
  dlopen(/Library/Frameworks/R.framework/Versions/3.4/Resources/library/S4Vectors/libs/S4Vectors.so, 6): no suitable image found.  Did find:
	/Library/Frameworks/R.framework/Versions/3.4/Resources/library/S4Vectors/libs/S4Vectors.so: unknown file type, first eight bytes: 0x7F 0x45 0x4C 0x46 0x02 0x01 0x01 0x00
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/S4Vectors’
* restoring previous ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/S4Vectors’