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BioC 3.5: INSTALL report for GenomicRanges on tokay2

This page was generated on 2017-10-18 14:20:40 -0400 (Wed, 18 Oct 2017).

Package 542/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicRanges 1.28.6
Bioconductor Package Maintainer
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/GenomicRanges
Branch: RELEASE_3_5
Last Commit: 197472d
Last Changed Date: 2017-10-03 14:39:56 -0400 (Tue, 03 Oct 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ ERROR ] TIMEOUT  skipped  skipped 
veracruz2 OS X 10.11.6 El Capitan / x86_64  ERROR  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenomicRanges
Version: 1.28.6
Command: rm -rf GenomicRanges.buildbin-libdir && mkdir GenomicRanges.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/GenomicRanges_1.28.6.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=GenomicRanges.buildbin-libdir --merge-multiarch GenomicRanges_1.28.6.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL GenomicRanges_1.28.6.zip && rm GenomicRanges_1.28.6.tar.gz GenomicRanges_1.28.6.zip
StartedAt: 2017-10-17 18:23:13 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 18:23:19 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 6.2 seconds
RetCode: 1
Status:  ERROR  

Command output

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###
### Running command:
###
###   rm -rf GenomicRanges.buildbin-libdir && mkdir GenomicRanges.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/GenomicRanges_1.28.6.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=GenomicRanges.buildbin-libdir --merge-multiarch GenomicRanges_1.28.6.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL GenomicRanges_1.28.6.zip  && rm GenomicRanges_1.28.6.tar.gz GenomicRanges_1.28.6.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  242k  100  242k    0     0  10.9M      0 --:--:-- --:--:-- --:--:-- 11.8M

install for i386

* installing *source* package 'GenomicRanges' ...
** libs
C:\Rtools\mingw_32\bin\nm.exe: IRanges_stubs.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: R_init_GenomicRanges.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: S4Vectors_stubs.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: transcript_utils.o: File format not recognized
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
IRanges_stubs.o: file not recognized: File format not recognized
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'GenomicRanges'
* removing 'C:/Users/biocbuild/bbs-3.5-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges'
Warning: running command 'C:/Users/biocbuild/bbs-3.5-bioc/R/bin/i386/Rcmd.exe INSTALL --library=GenomicRanges.buildbin-libdir GenomicRanges_1.28.6.tar.gz --no-multiarch' had status 1