Back to Multiple platform build/check report for BioC 3.23:   simplified   long
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2026-04-18 11:37 -0400 (Sat, 18 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 alpha (2026-04-05 r89794) 4957
kjohnson3macOS 13.7.7 Venturaarm644.6.0 alpha (2026-04-08 r89818) 4686
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4627
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2078/2404HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sketchR 1.7.1  (landing page)
Charlotte Soneson
Snapshot Date: 2026-04-17 13:40 -0400 (Fri, 17 Apr 2026)
git_url: https://git.bioconductor.org/packages/sketchR
git_branch: devel
git_last_commit: 3e1f1af
git_last_commit_date: 2026-04-02 04:37:47 -0400 (Thu, 02 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped
See other builds for sketchR in R Universe.

BUILD results for sketchR on kunpeng2

To the developers/maintainers of the sketchR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sketchR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: sketchR
Version: 1.7.1
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data sketchR
StartedAt: 2026-04-17 01:55:32 -0000 (Fri, 17 Apr 2026)
EndedAt: 2026-04-17 01:56:06 -0000 (Fri, 17 Apr 2026)
EllapsedTime: 34.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data sketchR
###
##############################################################################
##############################################################################


* checking for file ‘sketchR/DESCRIPTION’ ... OK
* preparing ‘sketchR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘sketchR.Rmd’ using rmarkdown

Quitting from sketchR.Rmd:71-85 [load-pkg]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'TENxPBMCData' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'ExperimentHub'
---
Backtrace:
    ▆
 1. ├─base::suppressPackageStartupMessages(...)
 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
 3. └─base::library(TENxPBMCData)
 4.   └─base::tryCatch(...)
 5.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 6.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 7.         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'sketchR.Rmd' failed with diagnostics:
package or namespace load failed for 'TENxPBMCData' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'ExperimentHub'
--- failed re-building ‘sketchR.Rmd’

--- re-building ‘sketching_workflows.Rmd’ using rmarkdown

Quitting from sketching_workflows.Rmd:34-52 [load-pkg]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'TENxPBMCData' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'ExperimentHub'
---
Backtrace:
    ▆
 1. ├─base::suppressPackageStartupMessages(...)
 2. │ └─base::withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage"))
 3. └─base::library(TENxPBMCData)
 4.   └─base::tryCatch(...)
 5.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 6.       └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 7.         └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'sketching_workflows.Rmd' failed with diagnostics:
package or namespace load failed for 'TENxPBMCData' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called 'ExperimentHub'
--- failed re-building ‘sketching_workflows.Rmd’

SUMMARY: processing the following files failed:
  ‘sketchR.Rmd’ ‘sketching_workflows.Rmd’

Error: Vignette re-building failed.
Execution halted