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This page was generated on 2026-01-23 11:35 -0500 (Fri, 23 Jan 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4808
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4542
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1526/2345HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OUTRIDER 1.29.0  (landing page)
Christian Mertes
Snapshot Date: 2026-01-22 13:40 -0500 (Thu, 22 Jan 2026)
git_url: https://git.bioconductor.org/packages/OUTRIDER
git_branch: devel
git_last_commit: 8caa8cb
git_last_commit_date: 2025-10-29 10:46:21 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for OUTRIDER on kjohnson3

To the developers/maintainers of the OUTRIDER package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OUTRIDER.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: OUTRIDER
Version: 1.29.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OUTRIDER
StartedAt: 2026-01-22 17:12:59 -0500 (Thu, 22 Jan 2026)
EndedAt: 2026-01-22 17:13:39 -0500 (Thu, 22 Jan 2026)
EllapsedTime: 40.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OUTRIDER
###
##############################################################################
##############################################################################


* checking for file ‘OUTRIDER/DESCRIPTION’ ... OK
* preparing ‘OUTRIDER’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘OUTRIDER.Rnw’ using knitr
2026-01-22 17:13:30.224 R[12327:811607240] XType: Using static font registry.

Quitting from OUTRIDER.Rnw:181-202 [quick_guide]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 4/4 in VECTOR_ELT
---
Backtrace:
    x
 1. +-OUTRIDER::plotQQ(ods, res[1, geneID])
 2. \-OUTRIDER::plotQQ(ods, res[1, geneID])
 3.   \-OUTRIDER (local) .local(object, ...)
 4.     +-df[, `:=`(exp, -log10(ppoints(.N))), by = "subset"]
 5.     \-data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'OUTRIDER.Rnw' failed with diagnostics:
attempt access index 4/4 in VECTOR_ELT
--- failed re-building ‘OUTRIDER.Rnw’

SUMMARY: processing the following file failed:
  ‘OUTRIDER.Rnw’

Error: Vignette re-building failed.
Execution halted