Multiple platform build/check report for BioC 3.23 - BUILD results for BindingSiteFinder on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"	4508
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences"	3381
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for BindingSiteFinder on kjohnson3

To the developers/maintainers of the BindingSiteFinder package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BindingSiteFinder.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BindingSiteFinder

Version: 2.9.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BindingSiteFinder

StartedAt: 2026-03-08 15:24:45 -0400 (Sun, 08 Mar 2026)

EndedAt: 2026-03-08 15:25:32 -0400 (Sun, 08 Mar 2026)

EllapsedTime: 47.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BindingSiteFinder
###
##############################################################################
##############################################################################


* checking for file ‘BindingSiteFinder/DESCRIPTION’ ... OK
* preparing ‘BindingSiteFinder’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘vignette.Rmd’ using rmarkdown
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
2026-03-08 15:25:27.051 R[46008:116965994] XType: Using static font registry.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-20-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-21-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-22-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-23-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-24-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-25-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-26-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-27-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-28-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-29-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-30-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-31-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-32-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-33-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
The magick package is required to crop "/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpzqB5re/Rbuildaa364606d834/BindingSiteFinder/vignettes/vignette_files/figure-html/unnamed-chunk-34-1.png" but not available.
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH
Warning in hook_png(..., cmd = "optipng") :
  cannot find optipng; please install and put it in PATH

Quitting from vignette.Rmd:483-485 [unnamed-chunk-38]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'Gviz'
---
Backtrace:
    ▆
 1. ├─BindingSiteFinder::bindingSiteCoveragePlot(...)
 2. └─base::loadNamespace(x)
 3.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 4.     └─base (local) withOneRestart(expr, restarts[[1L]])
 5.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'vignette.Rmd' failed with diagnostics:
there is no package called 'Gviz'
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted