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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 84/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AnVIL 1.23.0  (landing page)
Marcel Ramos
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/AnVIL
git_branch: devel
git_last_commit: b498d04
git_last_commit_date: 2025-10-29 19:20:07 -0500 (Wed, 29 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for AnVIL on kjohnson3

To the developers/maintainers of the AnVIL package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnVIL.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: AnVIL
Version: 1.23.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnVIL
StartedAt: 2025-11-12 15:48:40 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 15:48:45 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 5.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AnVIL
###
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* checking for file ‘AnVIL/DESCRIPTION’ ... OK
* preparing ‘AnVIL’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BiocDockstore.Rmd’ using rmarkdown
--- finished re-building ‘BiocDockstore.Rmd’

--- re-building ‘Introduction.Rmd’ using rmarkdown

Quitting from Introduction.Rmd:127-131 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'gcloud_exists' is not an exported object from 'namespace:AnVILGCP'
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
'gcloud_exists' is not an exported object from 'namespace:AnVILGCP'
--- failed re-building ‘Introduction.Rmd’

--- re-building ‘RunningWorkflow.Rmd’ using rmarkdown
--- finished re-building ‘RunningWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction.Rmd’

Error: Vignette re-building failed.
Execution halted