| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-11-08 11:32 -0500 (Sat, 08 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4821 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 84/2323 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AnVIL 1.23.0 (landing page) Marcel Ramos
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
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To the developers/maintainers of the AnVIL package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnVIL.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: AnVIL |
| Version: 1.23.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnVIL |
| StartedAt: 2025-11-07 16:11:48 -0500 (Fri, 07 Nov 2025) |
| EndedAt: 2025-11-07 16:11:58 -0500 (Fri, 07 Nov 2025) |
| EllapsedTime: 9.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnVIL ### ############################################################################## ############################################################################## * checking for file ‘AnVIL/DESCRIPTION’ ... OK * preparing ‘AnVIL’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘BiocDockstore.Rmd’ using rmarkdown --- finished re-building ‘BiocDockstore.Rmd’ --- re-building ‘Introduction.Rmd’ using rmarkdown Quitting from Introduction.Rmd:127-131 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! 'gcloud_exists' is not an exported object from 'namespace:AnVILGCP' ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Introduction.Rmd' failed with diagnostics: 'gcloud_exists' is not an exported object from 'namespace:AnVILGCP' --- failed re-building ‘Introduction.Rmd’ --- re-building ‘RunningWorkflow.Rmd’ using rmarkdown --- finished re-building ‘RunningWorkflow.Rmd’ SUMMARY: processing the following file failed: ‘Introduction.Rmd’ Error: Vignette re-building failed. Execution halted