Back to Long Tests report for BioC 3.22

This page was generated on 2025-10-25 23:55 -0400 (Sat, 25 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4901
lconwaymacOS 12.7.6 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4691
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/31HostnameOS / ArchCHECK
biodbChebi 1.15.1  (landing page)
Pierrick Roger
Snapshot Date: 2025-10-25 09:55 -0400 (Sat, 25 Oct 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: b5e26aa
git_last_commit_date: 2025-06-24 10:11:00 -0400 (Tue, 24 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
lconwaymacOS 12.7.6 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on nebbiolo2

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
StartedAt: 2025-10-25 16:01:11 -0400 (Sat, 25 Oct 2025)
EndedAt: 2025-10-25 16:02:44 -0400 (Sat, 25 Oct 2025)
EllapsedTime: 93.1 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-10-25 16:01:48.954][biodb::testContext]
biodb.INFO [2025-10-25 16:01:48.956][biodb::testContext] ********************************************************************************
biodb.INFO [2025-10-25 16:01:48.957][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-10-25 16:01:48.958][biodb::testContext] ********************************************************************************
biodb.INFO [2025-10-25 16:01:48.959][biodb::testContext]
biodb.INFO [2025-10-25 16:01:48.965][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.2.
biodb.DEBUG[2025-10-25 16:01:48.967][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-10-25 16:01:48.974][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-10-25 16:01:48.975][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-10-25 16:01:48.976][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-10-25 16:01:48.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:48.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:48.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:48.979][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-10-25 16:01:48.997][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-10-25 16:01:48.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:48.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:48.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.000][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-10-25 16:01:49.001][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-10-25 16:01:49.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.013][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-10-25 16:01:49.014][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-10-25 16:01:49.015][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-10-25 16:01:49.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.018][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-10-25 16:01:49.019][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-10-25 16:01:49.020][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-10-25 16:01:49.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.024][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-10-25 16:01:49.025][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-10-25 16:01:49.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.028][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-10-25 16:01:49.029][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-10-25 16:01:49.030][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-10-25 16:01:49.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.033][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-10-25 16:01:49.034][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-10-25 16:01:49.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.037][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-10-25 16:01:49.038][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-10-25 16:01:49.039][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-10-25 16:01:49.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.043][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-10-25 16:01:49.044][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-10-25 16:01:49.045][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-10-25 16:01:49.045][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-10-25 16:01:49.046][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-10-25 16:01:49.047][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-10-25 16:01:49.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.051][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-10-25 16:01:49.052][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-10-25 16:01:49.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.055][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-10-25 16:01:49.056][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-10-25 16:01:49.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.059][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-10-25 16:01:49.060][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-10-25 16:01:49.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.064][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-10-25 16:01:49.065][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-10-25 16:01:49.066][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-10-25 16:01:49.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.069][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-10-25 16:01:49.070][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-10-25 16:01:49.074][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-10-25 16:01:49.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.077][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-10-25 16:01:49.078][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-10-25 16:01:49.079][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-10-25 16:01:49.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.085][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-10-25 16:01:49.116][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.131][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-10-25 16:01:49.132][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.133][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-10-25 16:01:49.134][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.135][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.136][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.137][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.138][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-10-25 16:01:49.139][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-10-25 16:01:49.140][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.141][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-10-25 16:01:49.141][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-10-25 16:01:49.142][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.143][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.144][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-10-25 16:01:49.144][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-10-25 16:01:49.144][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-10-25 16:01:49.144][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-10-25 16:01:49.144][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-10-25 16:01:49.145][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-10-25 16:01:49.146][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-25 16:01:49.147][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-25 16:01:49.148][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-10-25 16:01:49.149][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-25 16:01:49.150][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-25 16:01:49.150][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.151][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.152][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-10-25 16:01:49.153][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-10-25 16:01:49.154][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.155][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.156][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-10-25 16:01:49.158][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.159][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-10-25 16:01:49.160][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.161][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-10-25 16:01:49.161][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.162][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.163][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.164][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.165][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-10-25 16:01:49.166][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-10-25 16:01:49.167][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.168][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-10-25 16:01:49.169][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-10-25 16:01:49.170][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.171][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.172][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-10-25 16:01:49.172][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-10-25 16:01:49.172][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-10-25 16:01:49.172][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-10-25 16:01:49.172][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-10-25 16:01:49.173][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-10-25 16:01:49.173][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-25 16:01:49.174][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-25 16:01:49.175][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-10-25 16:01:49.176][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-25 16:01:49.177][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-25 16:01:49.178][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.179][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.180][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-10-25 16:01:49.180][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-10-25 16:01:49.181][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.182][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.183][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-10-25 16:01:49.185][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.186][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-10-25 16:01:49.187][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.188][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-10-25 16:01:49.189][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.190][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.191][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.192][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.192][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-10-25 16:01:49.193][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-10-25 16:01:49.194][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.195][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-10-25 16:01:49.196][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-10-25 16:01:49.197][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.198][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.199][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.200][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-10-25 16:01:49.201][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-25 16:01:49.202][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-25 16:01:49.203][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-10-25 16:01:49.203][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-25 16:01:49.204][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-25 16:01:49.205][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.206][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.207][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-10-25 16:01:49.208][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-10-25 16:01:49.209][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.210][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.211][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-10-25 16:01:49.212][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.217][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-10-25 16:01:49.218][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.219][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-10-25 16:01:49.220][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.221][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.222][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.223][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.224][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-10-25 16:01:49.225][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-10-25 16:01:49.226][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.227][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-10-25 16:01:49.228][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-10-25 16:01:49.229][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.230][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.231][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.232][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-10-25 16:01:49.233][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-25 16:01:49.233][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-25 16:01:49.234][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-10-25 16:01:49.235][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-25 16:01:49.236][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-25 16:01:49.237][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.238][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.239][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-10-25 16:01:49.239][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-10-25 16:01:49.240][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.241][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-10-25 16:01:49.245][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-10-25 16:01:49.246][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.314][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-10-25 16:01:49.318][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-10-25 16:01:49.319][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-10-25 16:01:49.321][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-10-25 16:01:49.322][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-10-25 16:01:49.323][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-10-25 16:01:49.325][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-10-25 16:01:49.326][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-10-25 16:01:49.327][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-10-25 16:01:49.334][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-10-25 16:01:49.336][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-10-25 16:01:49.337][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-10-25 16:01:49.339][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-10-25 16:01:49.340][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-10-25 16:01:49.342][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-10-25 16:01:49.343][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-10-25 16:01:49.345][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-10-25 16:01:49.346][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-10-25 16:01:49.348][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-10-25 16:01:49.349][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-10-25 16:01:49.350][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-10-25 16:01:49.352][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-10-25 16:01:49.353][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-10-25 16:01:49.355][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-10-25 16:01:49.356][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-10-25 16:01:49.358][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-10-25 16:01:49.359][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-10-25 16:01:49.361][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-10-25 16:01:49.362][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-10-25 16:01:49.363][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-10-25 16:01:49.365][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-10-25 16:01:49.366][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-10-25 16:01:49.368][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-10-25 16:01:49.369][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-10-25 16:01:49.371][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-10-25 16:01:49.372][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-10-25 16:01:49.374][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-10-25 16:01:49.375][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-10-25 16:01:49.376][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-10-25 16:01:49.378][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-10-25 16:01:49.379][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-10-25 16:01:49.381][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-10-25 16:01:49.382][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-10-25 16:01:49.384][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-10-25 16:01:49.385][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-10-25 16:01:49.387][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-10-25 16:01:49.388][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-10-25 16:01:49.389][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-10-25 16:01:49.391][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-10-25 16:01:49.392][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-10-25 16:01:49.394][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-10-25 16:01:49.395][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-10-25 16:01:49.397][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-10-25 16:01:49.398][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-10-25 16:01:49.400][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-10-25 16:01:49.401][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-10-25 16:01:49.402][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-10-25 16:01:49.404][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-10-25 16:01:49.405][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-10-25 16:01:49.407][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-10-25 16:01:49.408][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-10-25 16:01:49.409][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-10-25 16:01:49.411][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-10-25 16:01:49.412][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-10-25 16:01:49.414][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-10-25 16:01:49.415][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-10-25 16:01:49.417][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-10-25 16:01:49.418][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-10-25 16:01:49.419][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-10-25 16:01:49.421][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-10-25 16:01:49.422][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-10-25 16:01:49.424][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-10-25 16:01:49.425][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-10-25 16:01:49.427][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-10-25 16:01:49.428][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-10-25 16:01:49.429][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-10-25 16:01:49.431][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-10-25 16:01:49.432][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-10-25 16:01:49.434][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-10-25 16:01:49.449][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-10-25 16:01:49.451][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-10-25 16:01:49.452][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-10-25 16:01:49.453][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-10-25 16:01:49.460][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-10-25 16:01:49.462][initialize] This is biodb version 1.17.2.
biodb.DEBUG[2025-10-25 16:01:49.465][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-10-25 16:01:49.466][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.468][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.550][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-25 16:01:49.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:49.575][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-10-25 16:01:49.584][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-10-25 16:01:49.586][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.587][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.588][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.589][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-10-25 16:01:49.590][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.591][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.592][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.593][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-10-25 16:01:49.594][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-10-25 16:01:49.595][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-10-25 16:01:49.596][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.597][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-10-25 16:01:49.597][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-10-25 16:01:49.598][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-10-25 16:01:49.598][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-10-25 16:01:49.598][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-10-25 16:01:49.598][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-10-25 16:01:49.598][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-10-25 16:01:49.598][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-10-25 16:01:49.598][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-10-25 16:01:49.598][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-10-25 16:01:49.598][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-10-25 16:01:49.598][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-10-25 16:01:49.598][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-10-25 16:01:49.600][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-10-25 16:01:49.600][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-10-25 16:01:49.600][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-10-25 16:01:49.600][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-10-25 16:01:49.601][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-10-25 16:01:49.602][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-25 16:01:49.603][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-25 16:01:49.604][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-10-25 16:01:49.605][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-25 16:01:49.606][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-25 16:01:49.607][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-10-25 16:01:49.608][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-10-25 16:01:49.608][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-10-25 16:01:49.608][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-10-25 16:01:49.609][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-10-25 16:01:49.610][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-10-25 16:01:49.611][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-10-25 16:01:49.611][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-10-25 16:01:49.617][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-10-25 16:01:49.618][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-10-25 16:01:49.620][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-10-25 16:01:49.621][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-10-25 16:01:49.623][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-10-25 16:01:49.624][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-10-25 16:01:49.645][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-10-25 16:01:49.661][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-10-25 16:01:49.669][biodb::testThat]
biodb.INFO [2025-10-25 16:01:49.676][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-10-25 16:01:49.677][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:01:49.678][biodb::testThat]
biodb.TRACE[2025-10-25 16:01:49.681][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-10-25 16:01:49.683][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:49.686][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:49.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:49.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:49.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:49.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:49.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:49.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:49.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:49.720][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:49.721][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:49.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.723][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:49.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:49.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.741][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:49.742][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:49.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.744][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.771][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:49.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:49.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.775][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:49.777][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:49.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.778][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:49.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:49.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.784][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:49.785][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:49.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.787][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:49.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:49.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:49.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:49.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.795][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:49.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:49.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.801][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:49.802][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:49.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.804][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:49.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:49.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.809][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:49.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:49.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.812][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.813][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:49.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:49.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:49.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.820][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:49.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:49.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.826][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:49.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:49.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.829][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:49.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:49.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.834][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:49.835][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:49.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.837][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.838][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:49.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:49.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.842][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:49.843][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:49.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.845][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:49.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:49.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:49.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:49.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:49.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:49.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:49.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:49.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:49.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:49.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:49.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:49.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:49.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:49.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:49.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:49.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:49.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:49.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:49.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:49.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:49.931][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-10-25 16:01:49.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:49.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:49.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:49.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:49.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:49.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:49.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:49.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:49.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:49.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:49.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:49.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.982][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-25 16:01:49.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-25 16:01:49.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.986][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-25 16:01:49.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-25 16:01:49.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.990][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-10-25 16:01:49.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-10-25 16:01:49.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-10-25 16:01:49.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-10-25 16:01:49.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:49.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.087][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.090][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.115][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.116][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.118][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.142][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.143][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.145][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.169][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.170][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.172][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.196][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.197][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.199][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.223][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.224][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.226][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.289][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:50.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:50.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:50.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:50.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:50.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.301][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:50.302][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:50.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.304][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.305][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:50.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:50.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.316][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.324][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.328][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.329][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.331][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.332][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.344][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.352][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.359][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.360][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:50.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:50.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:50.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:50.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.381][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:50.382][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:50.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.384][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:50.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:50.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.406][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.407][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.409][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:50.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:50.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:50.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:50.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.434][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:50.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:50.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.437][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:50.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.449][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.452][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.456][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:50.457][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:50.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.459][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.468][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.471][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:50.476][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:50.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.478][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.485][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.488][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.490][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.491][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.495][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.496][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.498][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.502][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.505][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.509][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.512][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.516][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.517][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.518][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.522][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:50.524][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:50.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.525][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.541][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-10-25 16:01:50.575][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:50.576][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:50.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:50.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:50.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:50.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:50.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:50.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:50.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:50.588][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.591][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.611][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:50.612][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:50.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.614][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.615][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:50.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:50.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.619][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.626][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:50.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:50.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.634][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:50.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.640][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.642][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.647][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.648][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.649][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.651][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:50.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.654][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:50.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.657][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.658][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.662][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.663][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.665][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.670][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.671][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.673][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.678][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:50.679][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.681][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.682][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:50.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:50.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:50.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:50.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.689][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:50.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:50.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:50.732][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-10-25 16:01:50.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:50.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:50.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:50.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:50.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:50.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.774][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-25 16:01:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-25 16:01:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.778][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-25 16:01:50.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-25 16:01:50.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.782][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-10-25 16:01:50.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-10-25 16:01:50.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.786][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-10-25 16:01:50.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-10-25 16:01:50.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.870][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.873][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:50.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:50.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.899][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.922][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.923][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.925][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:50.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:50.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.944][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.948][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.950][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:50.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:50.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.962][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.977][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:50.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.980][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.981][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:50.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:50.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:50.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:50.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:50.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.003][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.004][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.006][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.029][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.030][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.032][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.054][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.057][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.069][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.072][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.080][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.081][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.083][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.084][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.094][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.098][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.102][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.106][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.107][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.108][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.109][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.131][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.132][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.134][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.164][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.187][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.189][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.200][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.203][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.207][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.208][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.210][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.214][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:51.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:51.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.217][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.220][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.221][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.223][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.228][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.230][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.234][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.235][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.237][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.240][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.241][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.243][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.248][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.250][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.254][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.255][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.257][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.260][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:51.261][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:51.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.263][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.267][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.268][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.270][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.274][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-10-25 16:01:51.275][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:51.276][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:51.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:51.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:51.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:51.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:51.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:51.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:51.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:51.288][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.289][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.291][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.296][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.297][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.299][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.300][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.304][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:51.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:51.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.307][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.316][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.319][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.327][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.332][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.333][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.335][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.336][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.340][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:51.341][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.342][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.344][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.348][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.349][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.350][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.356][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:51.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:51.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.358][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:51.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.364][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:51.365][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.366][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.367][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:51.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.371][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.372][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.374][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:51.417][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-10-25 16:01:51.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.442][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-25 16:01:51.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-25 16:01:51.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.446][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-25 16:01:51.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-25 16:01:51.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-10-25 16:01:51.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-10-25 16:01:51.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-10-25 16:01:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-10-25 16:01:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:51.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.527][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.530][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.552][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.553][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.555][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.579][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.580][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.603][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.605][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.616][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.620][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.624][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.628][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.629][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.630][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.631][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.653][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.654][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.659][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.682][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.683][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.684][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.695][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.703][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.707][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.708][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.709][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.710][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.721][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.732][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.733][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.735][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:51.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:51.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:51.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:51.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:51.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:51.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.757][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:51.758][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:51.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.760][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:51.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:51.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:51.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:51.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:51.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:51.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:51.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:51.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.783][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:51.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:51.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.785][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:51.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:51.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.797][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.800][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.803][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.806][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.810][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:51.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:51.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.813][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.817][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.818][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.820][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.823][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.824][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.830][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.834][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.835][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.837][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.841][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.842][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.844][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.851][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.855][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.856][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.858][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.862][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:51.863][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:51.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.864][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.869][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.871][ef$get] fields variable is a list.
biodb.INFO [2025-10-25 16:01:51.877][biodb::testThat]
biodb.INFO [2025-10-25 16:01:51.878][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-10-25 16:01:51.879][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:01:51.880][biodb::testThat]
biodb.DEBUG[2025-10-25 16:01:51.882][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-10-25 16:01:51.884][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-10-25 16:01:51.888][cch$loadContents] Load 3 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:51.894][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-10-25 16:01:51.898][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-10-25 16:01:51.902][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-10-25 16:01:51.903][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:51.904][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-10-25 16:01:51.905][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:51.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:51.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:51.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:51.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:51.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:51.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:51.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:51.917][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.918][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.920][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:51.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:51.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.925][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.926][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.928][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.929][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:51.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:51.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.933][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:51.934][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:51.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.936][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:51.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:51.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.943][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:51.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:51.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.948][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.949][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.951][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:51.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.956][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.957][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.959][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.960][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:51.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.964][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:51.965][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.967][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.968][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:51.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:51.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.972][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.973][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.974][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:51.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.979][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:51.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:51.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.982][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:51.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:51.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.987][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:51.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.990][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:51.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:51.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.995][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:51.996][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:51.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:51.998][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:51.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:52.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:52.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:52.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:52.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:52.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:52.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:52.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:52.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:52.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:52.044][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.047][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.052][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:52.053][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:52.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.055][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.056][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:52.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:52.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.060][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:52.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:52.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.063][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:52.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:52.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.068][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:52.069][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:52.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.071][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:52.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:52.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.079][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.084][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:52.085][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:52.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.086][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.088][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:52.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:52.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.091][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:52.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.094][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.095][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:52.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.099][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:52.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:52.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.102][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:52.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:52.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.107][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:52.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:52.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.110][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:52.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:52.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.115][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:52.116][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:52.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.118][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.119][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:52.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:52.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.123][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:52.124][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:52.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.125][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:52.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:52.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:52.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:52.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:52.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:52.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:52.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:52.168][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.171][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.176][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:52.177][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:52.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.179][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:52.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:52.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.184][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:52.185][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:52.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.191][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:52.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:52.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.196][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:52.197][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:52.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.198][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:52.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:52.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.203][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.206][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.211][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:52.212][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:52.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.214][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.215][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:52.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:52.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.219][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:52.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.222][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.223][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:52.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.227][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:52.228][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:52.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.230][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:52.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:52.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.237][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:52.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:52.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.243][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:52.244][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:52.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.245][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.247][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:52.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:52.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.251][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:52.252][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:52.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.253][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:52.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:52.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:52.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:52.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:52.319][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-10-25 16:01:52.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-10-25 16:01:52.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-10-25 16:01:52.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-10-25 16:01:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-10-25 16:01:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-10-25 16:01:52.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-10-25 16:01:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-10-25 16:01:52.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-10-25 16:01:52.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-10-25 16:01:52.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-10-25 16:01:52.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-10-25 16:01:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-10-25 16:01:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-10-25 16:01:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-10-25 16:01:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-10-25 16:01:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-10-25 16:01:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-10-25 16:01:52.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-10-25 16:01:52.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-10-25 16:01:52.371][biodb::testThat]
biodb.INFO [2025-10-25 16:01:52.372][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-10-25 16:01:52.373][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:01:52.374][biodb::testThat]
biodb.TRACE[2025-10-25 16:01:52.376][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:52.377][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:52.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.379][ef$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:52.380][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-10-25 16:01:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:52.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:52.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:52.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:52.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:52.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:52.417][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-10-25 16:01:52.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-10-25 16:01:52.441][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:52.447][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-10-25 16:01:52.448][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-10-25 16:01:52.466][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:52.495][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:52.498][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-25 16:01:52.499][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:01:52.501][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-10-25 16:01:52.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:52.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:52.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.514][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.515][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.516][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.522][ef$get] fields variable is a list.
biodb.INFO [2025-10-25 16:01:52.526][biodb::testThat]
biodb.INFO [2025-10-25 16:01:52.527][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-10-25 16:01:52.528][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:01:52.529][biodb::testThat]
biodb.TRACE[2025-10-25 16:01:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:52.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:52.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:52.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:52.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:52.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:52.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:01:52.612][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:52.614][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:52.618][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-25 16:01:52.618][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-10-25 16:01:52.632][biodb::testThat]
biodb.INFO [2025-10-25 16:01:52.633][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-10-25 16:01:52.634][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:01:52.635][biodb::testThat]
biodb.TRACE[2025-10-25 16:01:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:52.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:52.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:52.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:52.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-25 16:01:52.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-25 16:01:52.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.670][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-25 16:01:52.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-25 16:01:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-10-25 16:01:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-10-25 16:01:52.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.682][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-10-25 16:01:52.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-10-25 16:01:52.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:52.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:52.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:52.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:52.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:52.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:52.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.717][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-25 16:01:52.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-25 16:01:52.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-25 16:01:52.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-25 16:01:52.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.724][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-10-25 16:01:52.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-10-25 16:01:52.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:52.728][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-10-25 16:01:52.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-10-25 16:01:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:52.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-10-25 16:01:52.737][biodb::testThat]
biodb.INFO [2025-10-25 16:01:52.738][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-10-25 16:01:52.738][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:01:52.739][biodb::testThat]
biodb.INFO [2025-10-25 16:01:52.747][biodb::testThat]
biodb.INFO [2025-10-25 16:01:52.748][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-10-25 16:01:52.749][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:01:52.750][biodb::testThat]
biodb.INFO [2025-10-25 16:01:52.756][biodb::testThat]
biodb.INFO [2025-10-25 16:01:52.757][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-10-25 16:01:52.758][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:01:52.759][biodb::testThat]
biodb.DEBUG[2025-10-25 16:01:52.762][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-10-25 16:01:53.738][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-10-25 16:01:54.056][biodb::testThat]
biodb.INFO [2025-10-25 16:01:54.057][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-10-25 16:01:54.058][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:01:54.060][biodb::testThat]
biodb.TRACE[2025-10-25 16:01:54.068][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:54.069][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:54.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.072][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:54.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:54.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.079][ef$get] fields variable is a list.
biodb.INFO [2025-10-25 16:01:54.081][biodb::testThat]
biodb.INFO [2025-10-25 16:01:54.082][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-10-25 16:01:54.083][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:01:54.085][biodb::testThat]
biodb.TRACE[2025-10-25 16:01:54.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:54.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:54.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:54.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:54.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:54.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:54.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:01:54.203][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:54.205][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:54.209][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-25 16:01:54.210][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-10-25 16:01:54.291][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:54.293][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:54.296][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-25 16:01:54.297][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-10-25 16:01:54.309][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:01:54.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:01:54.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:01:54.341][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:54.344][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:54.346][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-10-25 16:01:54.347][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:01:54.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:54.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:54.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:54.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:54.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:54.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:54.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:54.358][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-10-25 16:01:54.402][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:54.403][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:54.407][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-10-25 16:01:54.408][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:54.409][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:54.410][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:54.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:54.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:54.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:54.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:54.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:54.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:54.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:54.422][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.423][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.425][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.435][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:54.436][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:54.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.437][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.438][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:54.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:54.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.442][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:54.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:54.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.445][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:54.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:54.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:54.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:54.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.453][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:54.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.458][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:54.459][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:54.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.460][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.465][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:54.466][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:54.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.468][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.469][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:54.470][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.472][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.473][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:54.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:54.478][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:54.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.480][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:54.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:54.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.485][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:54.486][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:54.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.488][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.493][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:54.494][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:54.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.495][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:54.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:54.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.500][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:54.501][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:54.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.503][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:54.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:54.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:54.545][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-10-25 16:01:54.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:01:54.566][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:54.568][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:54.571][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-10-25 16:01:54.572][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:01:54.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:54.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:54.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:54.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:54.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:54.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:54.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:54.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:54.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:54.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:54.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:54.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:54.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:54.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:54.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:54.620][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-10-25 16:01:54.621][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:54.622][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:54.626][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-10-25 16:01:54.627][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:54.628][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:54.629][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:54.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:54.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:54.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:54.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:54.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:54.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:54.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:54.641][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.642][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.644][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.649][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:54.650][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:54.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.651][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.653][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:54.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:54.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.656][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:54.657][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:54.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.659][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:54.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.664][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:54.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:54.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.667][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:54.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:54.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:54.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:54.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.675][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:54.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:54.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.680][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:54.681][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:54.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.682][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.684][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:54.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.686][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.687][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:54.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.691][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:54.692][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:54.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.694][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:54.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.699][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:54.700][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:54.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.702][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:54.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:54.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.707][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:54.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:54.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.709][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:54.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.714][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:54.715][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:54.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.717][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:54.763][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-10-25 16:01:54.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:01:54.791][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:54.793][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:54.796][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-25 16:01:54.797][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:01:54.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:54.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:54.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:54.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:54.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:54.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:54.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:54.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:54.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:54.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:54.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:54.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:54.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:54.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:54.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:54.829][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-10-25 16:01:54.830][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:54.831][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:54.834][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-10-25 16:01:54.835][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:54.836][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:54.837][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:54.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:54.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:54.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:54.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:54.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:54.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:54.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:54.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.852][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.856][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:54.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:54.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.859][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.860][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:54.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:54.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.863][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:54.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:54.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.867][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.868][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:54.869][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:54.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.871][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.872][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:54.873][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:54.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.875][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.876][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:54.877][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.879][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:54.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:54.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.887][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.888][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:54.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:54.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.891][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:54.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:54.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.896][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:54.897][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:54.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.899][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.900][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:54.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:54.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.904][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:54.905][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:54.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.906][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:54.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:54.945][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-10-25 16:01:54.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:54.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:54.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:54.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:54.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:54.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:54.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:54.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:54.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:54.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:54.974][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-10-25 16:01:54.975][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:54.977][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:54.980][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-10-25 16:01:54.981][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:54.983][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:54.984][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:54.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:54.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:54.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:54.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:54.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:54.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:54.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:54.996][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:54.997][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:54.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:54.999][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.004][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:55.005][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:55.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.006][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.008][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:55.009][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:55.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.010][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:55.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:55.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.014][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.017][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.018][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.020][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.021][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.022][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.023][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:55.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.026][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.027][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.028][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.030][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.031][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:55.032][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:55.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.034][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:55.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:55.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.061][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:55.062][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:55.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.064][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:55.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:55.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.069][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:55.070][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:55.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.072][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:55.111][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-10-25 16:01:55.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:55.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:55.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:55.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:55.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:55.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:55.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:55.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:55.141][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-10-25 16:01:55.142][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:55.143][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:55.147][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-10-25 16:01:55.148][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:55.149][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:55.150][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:55.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:55.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:55.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:55.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:55.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:55.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:55.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:55.162][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.165][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.170][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:55.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:55.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.172][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.173][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:55.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:55.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.176][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:55.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:55.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.180][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.184][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.185][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.186][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.188][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.189][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:55.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.192][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.194][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.196][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.197][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:55.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:55.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.200][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:55.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.206][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:55.207][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:55.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.208][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:55.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:55.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:55.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:55.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.221][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:55.259][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-10-25 16:01:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:55.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:55.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:55.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:55.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:55.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:55.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:55.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:55.289][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-10-25 16:01:55.290][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:55.291][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:55.296][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-10-25 16:01:55.297][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:55.298][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:55.299][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:55.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:55.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:55.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:55.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:55.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:55.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:55.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:55.311][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.312][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.314][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.319][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:55.320][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:55.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.322][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.323][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:55.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:55.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.327][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:55.328][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:55.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.330][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:55.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:55.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:55.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:55.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.338][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:55.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.343][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.344][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.345][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.350][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.351][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.353][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.354][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.358][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:55.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.361][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.362][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:55.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.366][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.367][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.369][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.378][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:55.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:55.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.381][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:55.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:55.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.386][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:55.387][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:55.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.389][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:55.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:55.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.394][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:55.395][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:55.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.397][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:55.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:55.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:55.439][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-10-25 16:01:55.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:55.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:55.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:55.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:55.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:55.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:55.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:55.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:55.461][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-10-25 16:01:55.462][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:55.463][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:55.468][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-10-25 16:01:55.469][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:55.470][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:55.471][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:55.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:55.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:55.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:55.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:55.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:55.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:55.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:55.483][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.486][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.491][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:55.492][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:55.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.493][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.495][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:55.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:55.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.498][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:55.499][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:55.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.501][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:55.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:55.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.506][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:55.507][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:55.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.509][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:55.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:55.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.514][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.517][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.522][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.523][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.525][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.526][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.535][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:55.536][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.537][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.538][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:55.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.542][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.545][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.550][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:55.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:55.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.553][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:55.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:55.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.558][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:55.559][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:55.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.560][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.561][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:55.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:55.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:55.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:55.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.568][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:55.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:55.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:55.610][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-10-25 16:01:55.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:55.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:55.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:55.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:55.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:55.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:55.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:55.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:55.632][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-10-25 16:01:55.633][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:55.634][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:55.638][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-10-25 16:01:55.639][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:55.641][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:55.642][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:55.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:55.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:55.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:55.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:55.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:55.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:55.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:55.654][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.655][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.657][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.662][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:55.663][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:55.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.664][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.666][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:55.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:55.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.670][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:55.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:55.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.672][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:55.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:55.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.677][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:55.678][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:55.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.680][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:55.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:55.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.693][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.697][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.698][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.700][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.701][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:55.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.704][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.705][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:55.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.709][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.712][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.717][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:55.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:55.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.720][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:55.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:55.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.725][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:55.726][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:55.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.727][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:55.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:55.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:55.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:55.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.735][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:55.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:55.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:55.778][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-10-25 16:01:55.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:55.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:55.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:55.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:55.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:55.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:55.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:55.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:55.799][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-10-25 16:01:55.800][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:55.802][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:55.806][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-10-25 16:01:55.807][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:55.808][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:55.809][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:55.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:55.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:55.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:55.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:55.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:55.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:55.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:55.822][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.825][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.830][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:55.831][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:55.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.832][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.834][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:55.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:55.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.838][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:55.839][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:55.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.845][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:55.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:55.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:55.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:55.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.853][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:55.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:55.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.860][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:55.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.865][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.866][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:55.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.868][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.869][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:55.870][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.872][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.873][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:55.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.880][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:55.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.885][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:55.886][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:55.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.887][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:55.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:55.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.892][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:55.893][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:55.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.895][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.896][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:55.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:55.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.900][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:55.901][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:55.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.903][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:55.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:55.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:55.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:55.946][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-10-25 16:01:55.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:55.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:55.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:55.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:55.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:55.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:55.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:55.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:55.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:55.968][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-10-25 16:01:55.969][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:55.970][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:55.974][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-10-25 16:01:55.975][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:55.976][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:55.977][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:55.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:55.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:55.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:55.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:55.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:55.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:55.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:55.989][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.992][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:55.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:55.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:55.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.001][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.003][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.004][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.009][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.010][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.012][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:56.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:56.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.020][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:56.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:56.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.025][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.027][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.032][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:56.033][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:56.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.035][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.036][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:56.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.039][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.040][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:56.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.044][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.045][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.047][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.052][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:56.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:56.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.054][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:56.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.059][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:56.060][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:56.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.062][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.063][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:56.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.067][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:56.068][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:56.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.070][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:56.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:56.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:56.112][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-10-25 16:01:56.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:56.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:56.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:56.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:56.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:56.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:56.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:56.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:56.134][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-10-25 16:01:56.135][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:56.136][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:56.140][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-10-25 16:01:56.141][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:56.142][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:56.143][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:56.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:56.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:56.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:56.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:56.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:56.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:56.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:56.160][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.161][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.162][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.167][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.168][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.170][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.171][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.175][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.178][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.183][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:56.184][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:56.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.185][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:56.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:56.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.191][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.193][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.198][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:56.199][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:56.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.201][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.202][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:56.203][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.205][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.206][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:56.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.210][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.212][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.217][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:56.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:56.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.220][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:56.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:56.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.225][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:56.226][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:56.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.228][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:56.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:56.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.233][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:56.234][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:56.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.235][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:56.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:56.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:56.278][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-10-25 16:01:56.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:56.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:56.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:56.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:56.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:56.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:56.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:56.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:56.299][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-10-25 16:01:56.300][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:56.302][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:56.310][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-10-25 16:01:56.311][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:56.312][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:56.313][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:56.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:56.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:56.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:56.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:56.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:56.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:56.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:56.325][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.326][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.328][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.333][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.334][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.335][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.337][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.340][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.343][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:56.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:56.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.351][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:56.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:56.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.359][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.364][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:56.365][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:56.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.366][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.368][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:56.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.370][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.372][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:56.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.375][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.378][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.383][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:56.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:56.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.386][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:56.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:56.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.391][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:56.392][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:56.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.394][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:56.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:56.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.399][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:56.400][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:56.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.401][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:56.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:56.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:56.444][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-10-25 16:01:56.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:56.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:56.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:56.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:56.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:56.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:56.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:56.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:56.470][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-10-25 16:01:56.471][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:56.473][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:56.475][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-10-25 16:01:56.476][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:56.477][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:56.478][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:56.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:56.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:56.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:56.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:56.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:56.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:56.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:56.490][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.491][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.493][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.498][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.499][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.501][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.502][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.506][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.507][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.509][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:56.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:56.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.517][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.518][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.519][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.521][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.522][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:56.523][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:56.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.524][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.526][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:56.527][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.528][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.529][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:56.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.533][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.534][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.536][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.541][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:56.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:56.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.544][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:56.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:56.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.549][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:56.550][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:56.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.552][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.553][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:56.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:56.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.556][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:56.557][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:56.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.559][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:56.598][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-10-25 16:01:56.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:56.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:56.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:56.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:56.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:56.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:56.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:56.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:56.624][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-10-25 16:01:56.625][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:56.627][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:56.629][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-10-25 16:01:56.630][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:56.631][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:56.632][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:56.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:56.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:56.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:56.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:56.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:56.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:56.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:56.644][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.647][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.652][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.653][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.655][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.656][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.662][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.667][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:56.668][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:56.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.670][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.674][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.675][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:56.676][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:56.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.678][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.679][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:56.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.682][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.683][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:56.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.689][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.694][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:56.695][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:56.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.697][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.702][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:56.703][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:56.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.705][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.706][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:56.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.710][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:56.711][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:56.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.713][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:56.751][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-10-25 16:01:56.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:56.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:56.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:56.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:56.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:56.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:56.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:56.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:56.778][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-10-25 16:01:56.778][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:56.780][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:56.784][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-10-25 16:01:56.785][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:56.786][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:56.787][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:56.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:56.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:56.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:56.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:56.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:56.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:56.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:56.799][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.801][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.806][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.807][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.809][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.810][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.814][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.817][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:56.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:56.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.825][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:56.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:56.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.832][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.837][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:56.838][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:56.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.840][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.841][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:56.842][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.844][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.845][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:56.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.851][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.856][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:56.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:56.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.859][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:56.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:56.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.864][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:56.865][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:56.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.867][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.868][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:56.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:56.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:56.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.875][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:56.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:56.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:56.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:56.917][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-10-25 16:01:56.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:56.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:56.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:56.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:56.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:56.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:56.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:56.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:56.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:56.943][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-10-25 16:01:56.944][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:56.946][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:56.949][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-10-25 16:01:56.950][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:56.952][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:56.953][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:56.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:56.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:56.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:56.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:56.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:56.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:56.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:56.965][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.966][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.967][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:56.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:56.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.972][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.973][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.975][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.976][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:56.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:56.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.980][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.981][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.983][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:56.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:56.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:56.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:56.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.991][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:56.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:56.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.996][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.997][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:56.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:56.998][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:56.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.003][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:57.004][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:57.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.006][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.007][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:57.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.010][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.011][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:57.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.018][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.023][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:57.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:57.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.025][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:57.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:57.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.031][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:57.031][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:57.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.033][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.034][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:57.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:57.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.038][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:57.039][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:57.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.041][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:57.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:57.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:57.088][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-10-25 16:01:57.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:57.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:57.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:57.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:57.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:57.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:57.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:57.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:57.110][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-10-25 16:01:57.111][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:57.112][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:57.116][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-10-25 16:01:57.117][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:57.119][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:57.120][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:57.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:57.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:57.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:57.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:57.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:57.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:57.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:57.132][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.133][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.135][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.140][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:57.141][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:57.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.143][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.144][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:57.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:57.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.148][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:57.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:57.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.150][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:57.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:57.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.155][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:57.156][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:57.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.158][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:57.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:57.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.163][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.164][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.166][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.171][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:57.172][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:57.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.173][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.175][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:57.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.177][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.178][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:57.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.183][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.185][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.190][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:57.191][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:57.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.193][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:57.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:57.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.198][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:57.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:57.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.201][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:57.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:57.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:57.206][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:57.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.208][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:57.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:57.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:57.255][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-10-25 16:01:57.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:57.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:57.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:57.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:57.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:57.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:57.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:57.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:57.277][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-10-25 16:01:57.278][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:57.279][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:57.283][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-10-25 16:01:57.284][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:57.285][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:57.287][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:57.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:57.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:57.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:57.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:57.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:57.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:57.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:57.298][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.299][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.301][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.306][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:57.307][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:57.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.309][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.310][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:57.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:57.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.314][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:57.315][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:57.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.317][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:57.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:57.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:57.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:57.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.325][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:57.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:57.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.331][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.332][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.337][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:57.338][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:57.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.340][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.341][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:57.342][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.344][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.345][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:57.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.352][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.357][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:57.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:57.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.360][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:57.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:57.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.365][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:57.366][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:57.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.368][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.369][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:57.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:57.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:57.374][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:57.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.376][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:57.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:57.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:57.422][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-10-25 16:01:57.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:57.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:57.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:57.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:57.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:57.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:57.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:57.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:57.444][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-10-25 16:01:57.445][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:57.447][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:57.451][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-10-25 16:01:57.452][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:57.453][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:57.454][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:57.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:57.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:57.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:57.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:57.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:57.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:57.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:57.466][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.469][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.474][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:57.475][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:57.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.477][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.478][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:57.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:57.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.482][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:57.483][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:57.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.484][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:57.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:57.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:57.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.492][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:57.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:57.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.497][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.498][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.500][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.505][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:57.506][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:57.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.508][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.509][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:57.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.512][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.513][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.517][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.519][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.524][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:57.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:57.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.527][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:57.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:57.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.533][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:57.534][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:57.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.535][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:57.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:57.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.545][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:57.546][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:57.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.548][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:57.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:57.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:57.591][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-10-25 16:01:57.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:57.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:57.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:57.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:57.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:57.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:57.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:57.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:57.621][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-10-25 16:01:57.622][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:57.624][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:57.628][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-10-25 16:01:57.629][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:57.630][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:57.632][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:57.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:57.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:57.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:57.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:57.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:57.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:57.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:57.646][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.649][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.655][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:57.656][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:57.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.658][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:57.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:57.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.664][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:57.665][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:57.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.667][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:57.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:57.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.673][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:57.674][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:57.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.676][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:57.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:57.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.681][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.684][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.690][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:57.691][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:57.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.693][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.694][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:57.695][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.697][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.699][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:57.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.703][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.704][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.707][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.727][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:57.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:57.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.730][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:57.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:57.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.736][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:57.737][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:57.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.739][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:57.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:57.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.744][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:57.745][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:57.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.747][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:57.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:57.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:57.793][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-10-25 16:01:57.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:57.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:57.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:57.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:57.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:57.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:57.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:57.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:57.815][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-10-25 16:01:57.816][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:57.817][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:57.820][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-10-25 16:01:57.821][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:57.822][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:57.823][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:57.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:57.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:57.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:57.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:57.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:57.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:57.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:57.835][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.836][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.838][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.843][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:57.844][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:57.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.846][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.847][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:57.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:57.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.851][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:57.852][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:57.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.853][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:57.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:57.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.859][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:57.860][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:57.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.861][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:57.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:57.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.866][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.867][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.869][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:57.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.874][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:57.875][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:57.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.877][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.878][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:57.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.885][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.886][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:57.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.890][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.891][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.893][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:57.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.898][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:57.899][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:57.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.900][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:57.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:57.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.905][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:57.906][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:57.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.908][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.909][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:57.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:57.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.913][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:57.914][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:57.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.916][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:57.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:57.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:57.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:57.958][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-10-25 16:01:57.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:57.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:57.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:57.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:01:57.986][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:57.988][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:57.991][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-25 16:01:57.992][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:01:57.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:57.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:57.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:01:58.506][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:58.509][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:58.511][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-10-25 16:01:58.511][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-10-25 16:01:58.514][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:58.516][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:58.519][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-10-25 16:01:58.520][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:01:58.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:58.532][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-10-25 16:01:58.533][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:58.534][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:58.538][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-10-25 16:01:58.539][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:58.540][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:58.541][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:58.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.553][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.556][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.561][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:58.562][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:58.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.564][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:58.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:58.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.569][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:58.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:58.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.572][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:58.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:58.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:58.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.580][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:58.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:58.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.585][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:58.586][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:58.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.587][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:58.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:58.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:58.593][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:58.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.595][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.596][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:58.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:58.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.600][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:58.601][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.603][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.608][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.610][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.615][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:58.616][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:58.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.618][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.623][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:58.624][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:58.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.626][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.627][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:58.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:58.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.631][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:58.632][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:58.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.634][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:58.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:58.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:58.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:58.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:58.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:58.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:58.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:58.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.681][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-10-25 16:01:58.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-25 16:01:58.723][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-10-25 16:01:58.724][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-25 16:01:58.726][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-25 16:01:58.729][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-10-25 16:01:58.730][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-25 16:01:58.732][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-25 16:01:58.733][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-25 16:01:58.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.744][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.747][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.752][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:58.753][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:58.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.755][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.756][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:01:58.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:01:58.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.760][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:58.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:58.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.763][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:01:58.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:01:58.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.768][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:58.769][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:58.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.771][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:01:58.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:01:58.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.776][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:58.777][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:58.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.779][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:01:58.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:01:58.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.784][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:58.785][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:01:58.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.786][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.788][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:58.789][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.790][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.792][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-25 16:01:58.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:58.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.800][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.803][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.808][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:58.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:58.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.811][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:01:58.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:01:58.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.816][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:58.817][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:58.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.819][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-25 16:01:58.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:01:58.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:58.825][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:58.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.827][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:01:58.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:01:58.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:58.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:58.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:58.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:58.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:01:58.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:01:58.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:01:58.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:01:58.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.869][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-10-25 16:01:58.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:01:58.896][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:58.899][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:58.902][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-25 16:01:58.903][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:01:58.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:58.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:58.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:58.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:58.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:58.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:58.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:58.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:58.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:58.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:58.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.316][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:01:59.364][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:59.367][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:59.370][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-25 16:01:59.371][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:01:59.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:01:59.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-10-25 16:01:59.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-10-25 16:01:59.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-10-25 16:01:59.844][biodb::testThat]
biodb.INFO [2025-10-25 16:01:59.845][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-10-25 16:01:59.851][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:01:59.852][biodb::testThat]
biodb.TRACE[2025-10-25 16:01:59.855][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:01:59.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:01:59.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.859][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:01:59.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:01:59.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.862][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:01:59.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:01:59.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-25 16:01:59.925][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:59.927][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:59.929][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-10-25 16:01:59.930][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:01:59.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:01:59.954][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:01:59.957][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:01:59.958][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-10-25 16:01:59.959][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:01:59.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:01:59.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:01:59.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:01:59.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:01:59.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:01:59.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:01:59.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:01:59.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:01:59.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:01:59.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:01:59.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:01:59.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:00.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:00.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:02:00.009][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-10-25 16:02:00.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:00.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:00.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:00.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:00.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:00.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:00.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:00.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:00.029][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-25 16:02:00.030][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-25 16:02:00.031][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-25 16:02:00.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:00.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.035][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.036][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.037][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.039][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:00.041][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:00.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.045][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.046][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-25 16:02:00.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.067][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-10-25 16:02:00.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:00.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:00.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:00.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:00.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:00.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:00.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:00.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:00.086][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-25 16:02:00.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-25 16:02:00.088][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-25 16:02:00.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:00.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.092][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.096][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.097][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:00.098][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:00.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.102][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.103][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-25 16:02:00.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.116][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-10-25 16:02:00.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:00.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:00.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:00.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:00.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:00.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:00.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:00.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:00.135][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-25 16:02:00.136][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-25 16:02:00.137][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-25 16:02:00.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:00.139][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.140][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.141][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.145][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:00.147][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:00.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.151][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.156][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-25 16:02:00.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:00.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:00.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:00.169][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-10-25 16:02:00.170][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-10-25 16:02:00.171][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-10-25 16:02:00.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:00.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:00.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:00.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:00.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:00.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:00.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-25 16:02:00.184][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:02:00.187][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-10-25 16:02:00.188][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:00.189][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:00.190][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:00.483][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:00.484][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:00.485][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:00.487][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:01.184][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:01.185][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:01.186][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:01.188][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:01.487][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:01.488][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:01.489][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:01.491][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:01.974][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:01.976][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:01.977][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:01.978][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:02.301][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:02.303][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:02.305][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:02.308][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:02.795][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:02.798][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:02.800][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:02.804][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:03.136][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:03.138][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:03.141][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:03.143][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:03.631][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:03.633][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:03.635][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:03.639][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:04.210][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:04.211][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:04.214][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:04.216][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:04.667][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:04.668][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:04.669][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:04.671][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:04.966][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:04.967][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:04.968][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:04.970][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:05.448][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:05.449][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:05.450][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:05.452][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:05.746][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:05.747][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:05.748][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:05.750][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:06.202][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:06.203][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:06.204][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:06.206][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:06.500][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:06.501][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:06.503][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:06.504][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:06.969][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:06.971][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:06.972][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:06.975][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:07.288][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:07.290][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:07.292][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:07.294][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:07.777][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:07.778][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:07.780][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:07.783][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:08.112][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:08.113][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:08.116][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:08.118][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:08.593][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-10-25 16:02:08.626][biodb::testThat]
biodb.INFO [2025-10-25 16:02:08.628][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-10-25 16:02:08.630][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:02:08.632][biodb::testThat]
biodb.TRACE[2025-10-25 16:02:08.636][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:02:08.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:02:08.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.642][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:02:08.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:02:08.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.647][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:02:08.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:02:08.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:02:08.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:08.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:08.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:08.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:08.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:08.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:08.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-25 16:02:08.762][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:02:08.764][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:02:08.766][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-10-25 16:02:08.767][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:02:08.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:08.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:08.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:08.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:08.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:08.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:08.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:08.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:02:08.795][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:02:08.797][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:02:08.799][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-10-25 16:02:08.800][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:02:08.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:08.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:08.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:08.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:08.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:08.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:08.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:08.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:02:08.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:08.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:08.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:08.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:08.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:08.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:08.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:08.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:08.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:02:08.866][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-10-25 16:02:08.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:08.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:08.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:08.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:08.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:08.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:08.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:08.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:08.943][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-25 16:02:08.944][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-25 16:02:08.945][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-25 16:02:08.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:08.947][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.948][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.950][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.952][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.953][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.954][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:08.964][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:08.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.968][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.969][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-25 16:02:08.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-10-25 16:02:08.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:08.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:08.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:08.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:08.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:08.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:08.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:08.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:08.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:08.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:08.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:09.000][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-25 16:02:09.001][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-25 16:02:09.002][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-25 16:02:09.003][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:09.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.007][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.007][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.008][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.010][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:09.012][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:09.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.016][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.017][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-25 16:02:09.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-10-25 16:02:09.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:09.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:09.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:09.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:09.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:09.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:09.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:09.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.052][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:09.053][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-25 16:02:09.054][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-25 16:02:09.055][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-25 16:02:09.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:09.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.057][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.059][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.061][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.063][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.064][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:09.065][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:09.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.068][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.069][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-25 16:02:09.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:09.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:09.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:09.081][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-10-25 16:02:09.082][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-10-25 16:02:09.083][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-10-25 16:02:09.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:09.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:09.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:09.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:09.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:09.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:09.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-25 16:02:09.096][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:02:09.099][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-10-25 16:02:09.114][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:09.115][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:09.116][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:09.415][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:09.417][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:09.419][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:09.420][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:09.895][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:09.897][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:09.899][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:09.903][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:10.348][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:10.349][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:10.352][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:10.355][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:10.809][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:10.810][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:10.811][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:10.812][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:11.120][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:11.121][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:11.122][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:11.124][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:11.684][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:11.685][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:11.686][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:11.688][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:11.981][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:11.982][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:11.983][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:11.985][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:12.436][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:12.437][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:12.438][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:12.440][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:12.753][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:12.754][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:12.756][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:12.757][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:13.216][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:13.217][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:13.218][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:13.219][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:13.510][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:13.511][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:13.512][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:13.514][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:13.964][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:13.966][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:13.967][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:13.968][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:14.310][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:14.311][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:14.312][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:14.314][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:14.886][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:14.889][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:14.891][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:14.895][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:15.223][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:15.225][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:15.227][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:15.230][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:15.717][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:15.720][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:15.722][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:15.726][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:16.068][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:16.069][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:16.072][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:16.074][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:16.563][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:16.565][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:16.567][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:16.571][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:16.904][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:16.906][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:16.909][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:16.913][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:17.402][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-10-25 16:02:17.453][biodb::testThat]
biodb.INFO [2025-10-25 16:02:17.455][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-10-25 16:02:17.457][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:02:17.458][biodb::testThat]
biodb.TRACE[2025-10-25 16:02:17.462][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:02:17.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:02:17.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.467][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:02:17.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:02:17.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.471][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:02:17.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:02:17.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:02:17.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:17.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:17.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:17.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:17.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:17.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:17.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-25 16:02:17.546][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:02:17.549][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:02:17.551][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-10-25 16:02:17.552][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:02:17.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:17.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:17.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:17.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:17.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:17.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:17.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:17.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:02:17.595][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:02:17.598][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:02:17.600][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-10-25 16:02:17.601][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:02:17.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:17.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:17.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:17.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:17.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:17.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:17.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:17.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:02:17.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:17.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:17.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:17.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:17.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:17.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:17.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:17.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:17.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:02:17.648][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-10-25 16:02:17.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:17.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:17.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:17.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:17.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:17.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:17.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:17.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:17.668][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-25 16:02:17.669][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-25 16:02:17.670][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-25 16:02:17.671][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:17.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.675][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.678][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.679][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:17.680][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:17.681][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.684][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.685][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-25 16:02:17.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-10-25 16:02:17.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:17.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:17.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:17.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:17.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:17.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:17.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:17.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:17.718][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-25 16:02:17.718][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-25 16:02:17.719][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-25 16:02:17.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:17.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.724][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.730][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.732][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:17.734][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:17.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.738][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.739][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-25 16:02:17.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.751][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-10-25 16:02:17.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:17.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:17.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:17.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:17.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:17.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:17.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:17.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:17.770][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-25 16:02:17.770][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-25 16:02:17.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-25 16:02:17.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:17.773][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.776][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.780][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:17.781][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-25 16:02:17.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.785][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.786][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-25 16:02:17.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:17.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:17.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:17.798][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-10-25 16:02:17.799][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-10-25 16:02:17.800][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-10-25 16:02:17.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:17.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:17.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:17.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:17.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:17.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:17.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-25 16:02:17.813][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:02:17.815][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-10-25 16:02:17.816][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:17.817][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:17.819][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:18.111][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:18.112][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:18.114][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:18.115][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:18.588][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:18.591][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:18.593][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:18.597][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:18.928][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:18.930][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:18.932][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:18.935][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:19.422][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:19.425][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:19.427][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:19.431][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:19.762][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:19.764][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:19.767][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:19.769][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:20.252][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:20.253][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:20.254][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:20.256][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:20.548][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:20.549][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:20.551][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:20.552][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:21.004][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:21.005][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:21.006][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:21.008][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:21.297][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:21.298][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:21.300][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:21.301][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:21.751][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:21.752][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:21.753][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:21.755][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:22.044][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:22.050][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:22.051][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:22.053][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:22.507][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:22.508][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:22.509][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:22.511][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:22.801][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:22.802][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:22.804][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:22.805][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:23.365][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:23.366][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:23.367][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:23.369][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:23.661][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:23.662][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:23.664][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:23.665][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:24.151][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:24.154][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:24.156][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:24.160][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:24.490][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:24.491][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:24.493][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:24.496][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:24.985][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:24.987][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:24.989][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:24.993][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:25.324][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:25.326][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:25.331][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:25.333][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:25.821][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.TRACE[2025-10-25 16:02:25.850][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:25.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:25.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.857][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.859][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:25.861][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:25.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.865][ef$get] fields variable is a list.
biodb.INFO [2025-10-25 16:02:25.868][biodb::testThat]
biodb.INFO [2025-10-25 16:02:25.869][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-10-25 16:02:25.871][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:02:25.873][biodb::testThat]
biodb.TRACE[2025-10-25 16:02:25.877][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:02:25.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:02:25.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.883][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:02:25.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:02:25.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:02:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:02:25.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:25.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:02:25.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:25.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:25.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:25.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:25.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:25.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:25.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-25 16:02:25.952][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:02:26.108][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-10-25 16:02:26.109][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:26.110][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:26.112][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:26.405][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:26.406][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:26.408][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:26.410][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:26.898][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:26.900][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:26.902][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:26.906][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:27.239][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:27.241][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:27.244][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:27.248][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:27.736][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:27.738][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:27.740][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:27.744][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:28.083][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:28.084][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:28.087][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:28.089][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:28.606][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:28.608][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:28.610][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:28.614][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:28.944][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:28.945][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:28.948][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:28.950][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:29.438][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:29.440][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:29.443][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:29.447][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:29.776][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:29.778][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:29.780][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:29.783][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:30.269][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:30.271][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:30.272][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:30.274][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:30.583][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:30.585][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:30.587][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:30.589][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:31.052][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:31.054][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:31.055][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:31.057][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:31.368][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:31.369][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:31.371][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:31.373][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:31.840][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:31.842][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:31.844][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:31.848][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:32.179][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:32.181][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:32.183][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:32.185][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:32.674][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:32.676][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:32.679][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:32.683][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:33.015][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:33.017][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:33.019][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:33.021][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:33.510][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:33.512][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:33.514][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:33.518][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:33.851][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:33.853][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:33.855][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:33.858][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:34.348][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-10-25 16:02:34.377][biodb::testThat]
biodb.INFO [2025-10-25 16:02:34.379][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-10-25 16:02:34.381][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-25 16:02:34.383][biodb::testThat]
biodb.TRACE[2025-10-25 16:02:34.388][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:02:34.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:02:34.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.396][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:02:34.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:02:34.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.402][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-25 16:02:34.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-25 16:02:34.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:02:34.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:34.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:34.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:34.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:34.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:34.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:34.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-25 16:02:34.472][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:02:34.475][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:02:34.477][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-10-25 16:02:34.478][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:02:34.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:34.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:34.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:34.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:34.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:34.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:34.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-25 16:02:34.504][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:02:34.507][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-25 16:02:34.509][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-10-25 16:02:34.510][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-25 16:02:34.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:34.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:34.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:34.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:34.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:34.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:34.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:34.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:02:34.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:34.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:34.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:34.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:34.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:34.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:34.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:34.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-25 16:02:34.558][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-10-25 16:02:34.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:34.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:34.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:34.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:34.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:34.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:34.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:34.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:34.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:34.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:34.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.582][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:34.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:34.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.586][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:34.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:34.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:34.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:34.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:34.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:34.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:34.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:34.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:34.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:34.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.618][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:34.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:34.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.622][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:34.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:34.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.640][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.644][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:34.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:34.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.651][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:34.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:34.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:34.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:34.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:34.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:34.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.662][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-25 16:02:34.662][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-25 16:02:34.663][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-25 16:02:34.664][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-25 16:02:34.665][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-25 16:02:34.666][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:34.667][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:34.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.669][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.669][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:34.670][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:34.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.672][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.676][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.677][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:34.678][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:34.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.679][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.680][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:34.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:34.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.683][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.686][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.687][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:34.688][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:34.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.690][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.691][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.693][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.694][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.695][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.697][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.698][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.699][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.701][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.702][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:34.703][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:34.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.704][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.705][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:34.706][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:34.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.708][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.709][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:34.710][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:34.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.711][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.712][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:34.713][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:34.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.715][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.719][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.720][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:34.721][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:34.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.722][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:34.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:34.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.726][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.727][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.728][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.730][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.730][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:34.731][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:34.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.733][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.734][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.735][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.737][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.738][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.739][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.740][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.741][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.742][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.744][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.745][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:34.746][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:34.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.748][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:34.750][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:34.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.751][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.752][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-10-25 16:02:34.753][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-10-25 16:02:34.754][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:34.755][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:34.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.757][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.758][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:34.759][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:34.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.760][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.764][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.765][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:34.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:34.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.768][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:34.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:34.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.771][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.775][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.778][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.780][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.782][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.783][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.784][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.786][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.787][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:34.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:34.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.789][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.790][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:34.791][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:34.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.793][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.794][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-10-25 16:02:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:34.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:34.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:34.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:34.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.810][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:34.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:34.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:34.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:34.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:34.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:34.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:34.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:34.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:34.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:34.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:34.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:34.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:34.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.887][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.890][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:34.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:34.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:34.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:34.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:34.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:34.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:34.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:34.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:34.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:34.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:34.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:34.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-10-25 16:02:34.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:34.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:34.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:34.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:34.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:34.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:34.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:34.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:34.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:34.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:34.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:34.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:34.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:34.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.946][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:34.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:34.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:34.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:34.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:34.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:34.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:34.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:34.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:34.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:34.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:34.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:34.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.979][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:34.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:34.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.982][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:34.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:34.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:34.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:34.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:34.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:34.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.000][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.004][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.022][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-25 16:02:35.023][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-25 16:02:35.024][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-25 16:02:35.025][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-25 16:02:35.026][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-25 16:02:35.027][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.028][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.029][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.030][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.031][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.033][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.037][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.037][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.040][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.041][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.042][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.044][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.045][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.046][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.047][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.048][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.049][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.051][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.052][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.053][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.055][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.055][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.056][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.058][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.059][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.060][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.062][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.063][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.064][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.065][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.066][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.067][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.069][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.070][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.072][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.073][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.074][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.076][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.077][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.080][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.081][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.083][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.087][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.090][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.091][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.092][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.094][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.095][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.098][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.099][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.101][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.102][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.103][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.105][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.106][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.109][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.116][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.117][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-25 16:02:35.118][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-25 16:02:35.118][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.121][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.122][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.123][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.125][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.128][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.132][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.133][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.133][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.135][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.137][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.139][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.140][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.141][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.142][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.143][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.146][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.147][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.149][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.150][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.151][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.153][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.154][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.155][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.156][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.157][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.158][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.160][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.161][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-10-25 16:02:35.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.227][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.230][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.234][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.260][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.267][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.298][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-10-25 16:02:35.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:35.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:35.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:35.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:35.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:35.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:35.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-25 16:02:35.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.356][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.359][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.377][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.402][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-25 16:02:35.403][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-25 16:02:35.404][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-25 16:02:35.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-25 16:02:35.406][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-25 16:02:35.407][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.408][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.409][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.410][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.411][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.413][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.414][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.415][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.416][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.417][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.420][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.421][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.422][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.423][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.424][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.425][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.427][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.428][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.429][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.430][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.431][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.432][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.434][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.437][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.438][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.439][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.441][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.442][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.443][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.444][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.445][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.446][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.448][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.449][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.451][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.452][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.453][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.455][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.457][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.459][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.459][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.460][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.462][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.463][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.464][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.466][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.466][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.469][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.470][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.471][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-25 16:02:35.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.473][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.474][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.474][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.476][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.478][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.480][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.481][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.482][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.483][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.484][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.487][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.488][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.489][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.490][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.491][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-10-25 16:02:35.492][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-10-25 16:02:35.493][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.496][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.496][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.497][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.499][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.503][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.504][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.505][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.506][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.507][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.508][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.510][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.511][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.513][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.514][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.515][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.517][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.518][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.519][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.521][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.521][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.522][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.524][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.525][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.526][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.528][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.529][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.531][ef$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.532][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-10-25 16:02:35.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-25 16:02:35.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-25 16:02:35.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.548][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.552][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-25 16:02:35.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-25 16:02:35.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-25 16:02:35.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-25 16:02:35.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-25 16:02:35.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-25 16:02:35.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-25 16:02:35.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-25 16:02:35.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-25 16:02:35.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-25 16:02:35.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-25 16:02:35.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-25 16:02:35.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-25 16:02:35.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-25 16:02:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-25 16:02:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-25 16:02:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-25 16:02:35.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-10-25 16:02:35.664][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-10-25 16:02:35.665][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-10-25 16:02:35.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-25 16:02:35.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:35.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:35.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:35.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:35.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:35.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-25 16:02:35.679][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-25 16:02:35.681][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-10-25 16:02:35.682][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:35.683][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:35.684][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:35.978][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:35.979][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:35.981][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:35.982][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:36.456][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:36.458][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:36.460][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:36.464][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:36.819][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:36.821][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:36.823][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:36.826][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:37.313][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:37.315][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:37.318][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:37.322][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:37.653][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:37.654][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:37.657][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:37.659][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:38.147][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:38.150][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:38.152][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:38.156][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:38.487][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:38.488][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:38.491][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:38.493][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:38.982][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:38.984][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:38.986][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:38.990][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:39.329][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:39.331][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:39.334][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:39.336][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:39.824][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:39.826][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:39.829][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:39.833][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:40.163][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:40.164][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:40.167][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:40.169][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:40.653][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:40.655][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:40.657][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:40.661][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:40.989][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:40.990][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:40.993][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:40.995][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:41.480][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:41.483][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:41.485][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:41.488][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:41.816][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:41.817][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:41.820][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:41.822][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:42.306][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:42.308][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:42.310][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:42.314][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:42.650][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:42.652][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:42.654][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:42.657][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:43.141][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-25 16:02:43.143][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-25 16:02:43.145][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-25 16:02:43.148][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-25 16:02:43.517][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-25 16:02:43.519][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-25 16:02:43.521][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-25 16:02:43.524][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-25 16:02:44.008][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-10-25 16:02:44.036][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-10-25 16:02:44.038][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-10-25 16:02:44.041][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-10-25 16:02:44.042][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-25 16:02:44.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-25 16:02:44.046][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-25 16:02:44.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-25 16:02:44.049][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-10-25 16:02:44.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)

[ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]
Error: Test failures
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
  Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─conn$annotateMzValues(...)
   4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
   5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
   6.         └─private$searchByMass(...)
   7.           └─self$wsGetLiteEntity(...)
   8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
  
  [ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.15.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)