Back to Long Tests report for BioC 3.22

This page was generated on 2026-02-14 23:55 -0500 (Sat, 14 Feb 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4889
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4679
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/31HostnameOS / ArchCHECK
biodbChebi 1.16.0  (landing page)
Pierrick Roger
Snapshot Date: 2026-02-14 09:55 -0500 (Sat, 14 Feb 2026)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_22
git_last_commit: 28c1b2d
git_last_commit_date: 2025-10-29 11:12:25 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
merida1macOS 12.7.6 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on merida1

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.16.0.tar.gz
StartedAt: 2026-02-14 16:01:16 -0500 (Sat, 14 Feb 2026)
EndedAt: 2026-02-14 16:02:46 -0500 (Sat, 14 Feb 2026)
EllapsedTime: 89.9 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2026-02-14 16:02:03.644][biodb::testContext]
biodb.INFO [2026-02-14 16:02:03.648][biodb::testContext] ********************************************************************************
biodb.INFO [2026-02-14 16:02:03.649][biodb::testContext] Test context - Generic long tests
biodb.INFO [2026-02-14 16:02:03.650][biodb::testContext] ********************************************************************************
biodb.INFO [2026-02-14 16:02:03.651][biodb::testContext]
biodb.INFO [2026-02-14 16:02:03.658][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.18.0.
biodb.DEBUG[2026-02-14 16:02:03.661][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2026-02-14 16:02:03.669][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2026-02-14 16:02:03.670][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2026-02-14 16:02:03.671][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2026-02-14 16:02:03.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.676][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2026-02-14 16:02:03.700][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2026-02-14 16:02:03.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.705][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2026-02-14 16:02:03.707][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2026-02-14 16:02:03.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.711][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2026-02-14 16:02:03.713][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2026-02-14 16:02:03.714][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2026-02-14 16:02:03.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.719][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2026-02-14 16:02:03.720][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2026-02-14 16:02:03.721][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2026-02-14 16:02:03.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.726][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2026-02-14 16:02:03.727][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2026-02-14 16:02:03.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.732][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2026-02-14 16:02:03.733][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2026-02-14 16:02:03.735][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2026-02-14 16:02:03.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.740][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2026-02-14 16:02:03.741][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2026-02-14 16:02:03.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.746][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2026-02-14 16:02:03.747][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2026-02-14 16:02:03.748][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2026-02-14 16:02:03.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.753][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2026-02-14 16:02:03.755][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2026-02-14 16:02:03.756][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2026-02-14 16:02:03.757][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2026-02-14 16:02:03.759][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2026-02-14 16:02:03.760][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2026-02-14 16:02:03.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.765][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2026-02-14 16:02:03.766][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2026-02-14 16:02:03.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.771][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2026-02-14 16:02:03.772][self$set] Set key entries.sep to "|".
biodb.DEBUG[2026-02-14 16:02:03.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.777][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2026-02-14 16:02:03.778][self$set] Set key offline to FALSE.
biodb.DEBUG[2026-02-14 16:02:03.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.788][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2026-02-14 16:02:03.790][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2026-02-14 16:02:03.791][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2026-02-14 16:02:03.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.796][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2026-02-14 16:02:03.797][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2026-02-14 16:02:03.808][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2026-02-14 16:02:03.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.812][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2026-02-14 16:02:03.814][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2026-02-14 16:02:03.815][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2026-02-14 16:02:03.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:03.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:03.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:03.822][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2026-02-14 16:02:03.864][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:03.886][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2026-02-14 16:02:03.887][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.888][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-14 16:02:03.890][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.891][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-14 16:02:03.892][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:03.893][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-02-14 16:02:03.895][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2026-02-14 16:02:03.896][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-14 16:02:03.897][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.898][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2026-02-14 16:02:03.900][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-14 16:02:03.901][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:03.902][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.903][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2026-02-14 16:02:03.903][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2026-02-14 16:02:03.903][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2026-02-14 16:02:03.903][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2026-02-14 16:02:03.903][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2026-02-14 16:02:03.905][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-02-14 16:02:03.906][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:02:03.907][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:02:03.908][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-14 16:02:03.910][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:02:03.911][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:02:03.912][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-14 16:02:03.913][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:03.914][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-14 16:02:03.915][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-14 16:02:03.917][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:03.918][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:03.919][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2026-02-14 16:02:03.921][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:03.923][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2026-02-14 16:02:03.924][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.925][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-14 16:02:03.926][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.928][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-14 16:02:03.929][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:03.930][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-02-14 16:02:03.931][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2026-02-14 16:02:03.933][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-14 16:02:03.934][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.935][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2026-02-14 16:02:03.936][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-14 16:02:03.938][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:03.939][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.940][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2026-02-14 16:02:03.940][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2026-02-14 16:02:03.940][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2026-02-14 16:02:03.940][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2026-02-14 16:02:03.940][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2026-02-14 16:02:03.941][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-02-14 16:02:03.943][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:02:03.944][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:02:03.945][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-14 16:02:03.946][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:02:03.947][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:02:03.949][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-14 16:02:03.950][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:03.951][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-14 16:02:03.952][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-14 16:02:03.953][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:03.955][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:03.956][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2026-02-14 16:02:03.958][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.960][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2026-02-14 16:02:03.961][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.962][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-14 16:02:03.963][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.965][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-14 16:02:03.966][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:03.967][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-02-14 16:02:03.969][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2026-02-14 16:02:03.970][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-14 16:02:03.971][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:03.972][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2026-02-14 16:02:03.974][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-14 16:02:03.975][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:03.976][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.977][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:03.979][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-02-14 16:02:03.980][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:02:03.981][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:02:03.982][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-14 16:02:03.983][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:02:03.984][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:02:03.985][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-14 16:02:03.987][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:03.988][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-14 16:02:03.989][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-14 16:02:03.990][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:03.991][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:03.993][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2026-02-14 16:02:03.995][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.996][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2026-02-14 16:02:03.998][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:03.999][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-14 16:02:04.000][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:04.001][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-14 16:02:04.003][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:04.004][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-02-14 16:02:04.005][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2026-02-14 16:02:04.006][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-14 16:02:04.008][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:04.009][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2026-02-14 16:02:04.010][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-14 16:02:04.012][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:04.013][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:04.014][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:04.015][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-02-14 16:02:04.017][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:02:04.018][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:02:04.019][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-14 16:02:04.020][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:02:04.021][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:02:04.022][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-14 16:02:04.024][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:04.025][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-14 16:02:04.026][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-14 16:02:04.027][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:04.034][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-02-14 16:02:04.038][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2026-02-14 16:02:04.039][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.130][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2026-02-14 16:02:04.135][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2026-02-14 16:02:04.136][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2026-02-14 16:02:04.138][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2026-02-14 16:02:04.140][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2026-02-14 16:02:04.142][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2026-02-14 16:02:04.143][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2026-02-14 16:02:04.145][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2026-02-14 16:02:04.147][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2026-02-14 16:02:04.148][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2026-02-14 16:02:04.150][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2026-02-14 16:02:04.152][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2026-02-14 16:02:04.153][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2026-02-14 16:02:04.155][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2026-02-14 16:02:04.157][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2026-02-14 16:02:04.158][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2026-02-14 16:02:04.160][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2026-02-14 16:02:04.162][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2026-02-14 16:02:04.164][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2026-02-14 16:02:04.165][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2026-02-14 16:02:04.167][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2026-02-14 16:02:04.169][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2026-02-14 16:02:04.170][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2026-02-14 16:02:04.172][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2026-02-14 16:02:04.174][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2026-02-14 16:02:04.176][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2026-02-14 16:02:04.177][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2026-02-14 16:02:04.179][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2026-02-14 16:02:04.181][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2026-02-14 16:02:04.182][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2026-02-14 16:02:04.184][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2026-02-14 16:02:04.186][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2026-02-14 16:02:04.188][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2026-02-14 16:02:04.189][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2026-02-14 16:02:04.191][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2026-02-14 16:02:04.193][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2026-02-14 16:02:04.194][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2026-02-14 16:02:04.196][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2026-02-14 16:02:04.198][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2026-02-14 16:02:04.200][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2026-02-14 16:02:04.201][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2026-02-14 16:02:04.203][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2026-02-14 16:02:04.205][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2026-02-14 16:02:04.207][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2026-02-14 16:02:04.208][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2026-02-14 16:02:04.210][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2026-02-14 16:02:04.212][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2026-02-14 16:02:04.214][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2026-02-14 16:02:04.216][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2026-02-14 16:02:04.218][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2026-02-14 16:02:04.219][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2026-02-14 16:02:04.221][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2026-02-14 16:02:04.223][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2026-02-14 16:02:04.225][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2026-02-14 16:02:04.227][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2026-02-14 16:02:04.229][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2026-02-14 16:02:04.231][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2026-02-14 16:02:04.233][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2026-02-14 16:02:04.235][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2026-02-14 16:02:04.237][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2026-02-14 16:02:04.238][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2026-02-14 16:02:04.240][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2026-02-14 16:02:04.242][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2026-02-14 16:02:04.244][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2026-02-14 16:02:04.245][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2026-02-14 16:02:04.247][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2026-02-14 16:02:04.249][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2026-02-14 16:02:04.250][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2026-02-14 16:02:04.252][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2026-02-14 16:02:04.254][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2026-02-14 16:02:04.256][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2026-02-14 16:02:04.257][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2026-02-14 16:02:04.259][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2026-02-14 16:02:04.261][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2026-02-14 16:02:04.267][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2026-02-14 16:02:04.269][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2026-02-14 16:02:04.271][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2026-02-14 16:02:04.272][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2026-02-14 16:02:04.274][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2026-02-14 16:02:04.276][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2026-02-14 16:02:04.278][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2026-02-14 16:02:04.279][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2026-02-14 16:02:04.281][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2026-02-14 16:02:04.288][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2026-02-14 16:02:04.290][initialize] This is biodb version 1.18.0.
biodb.DEBUG[2026-02-14 16:02:04.294][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2026-02-14 16:02:04.295][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.297][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-02-14 16:02:04.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-02-14 16:02:04.432][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2026-02-14 16:02:04.445][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2026-02-14 16:02:04.447][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:04.448][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2026-02-14 16:02:04.450][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:04.451][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-02-14 16:02:04.452][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:04.453][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-02-14 16:02:04.455][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:04.456][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2026-02-14 16:02:04.457][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2026-02-14 16:02:04.458][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-02-14 16:02:04.460][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:04.461][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2026-02-14 16:02:04.462][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-02-14 16:02:04.463][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2026-02-14 16:02:04.463][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2026-02-14 16:02:04.463][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2026-02-14 16:02:04.463][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2026-02-14 16:02:04.463][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2026-02-14 16:02:04.463][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2026-02-14 16:02:04.463][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2026-02-14 16:02:04.463][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2026-02-14 16:02:04.463][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2026-02-14 16:02:04.463][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2026-02-14 16:02:04.463][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2026-02-14 16:02:04.465][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2026-02-14 16:02:04.466][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2026-02-14 16:02:04.466][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2026-02-14 16:02:04.466][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2026-02-14 16:02:04.468][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2026-02-14 16:02:04.469][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:02:04.470][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:02:04.471][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-02-14 16:02:04.472][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-02-14 16:02:04.473][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-02-14 16:02:04.475][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-02-14 16:02:04.476][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2026-02-14 16:02:04.476][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2026-02-14 16:02:04.477][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-02-14 16:02:04.478][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-02-14 16:02:04.479][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2026-02-14 16:02:04.481][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2026-02-14 16:02:04.481][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2026-02-14 16:02:04.489][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2026-02-14 16:02:04.494][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2026-02-14 16:02:04.496][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2026-02-14 16:02:04.498][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2026-02-14 16:02:04.500][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2026-02-14 16:02:04.502][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2026-02-14 16:02:04.524][super$initialize] Initialize connector chebi.
biodb.DEBUG[2026-02-14 16:02:04.542][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2026-02-14 16:02:04.552][biodb::testThat]
biodb.INFO [2026-02-14 16:02:04.553][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2026-02-14 16:02:04.554][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:04.555][biodb::testThat]
biodb.TRACE[2026-02-14 16:02:04.560][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2026-02-14 16:02:04.562][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2026-02-14 16:02:04.566][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2026-02-14 16:02:04.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:04.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:04.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:04.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:04.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:04.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:04.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-14 16:02:04.607][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:04.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:04.609][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.611][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:04.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:04.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.634][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:04.635][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:04.636][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.638][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.674][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:04.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:04.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.680][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:04.681][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:04.682][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.684][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.685][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:04.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:04.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.690][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:04.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:04.693][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.694][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:04.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:04.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.701][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:04.702][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:04.704][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.705][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:04.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:04.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.712][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:04.713][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:04.714][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.715][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.717][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:04.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:04.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.722][ef$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:02:04.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:04.725][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.726][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.727][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:02:04.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:04.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.733][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:04.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:04.744][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.746][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:04.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:04.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.752][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:04.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:04.755][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.756][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:04.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:04.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.763][ef$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-14 16:02:04.764][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:04.766][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.767][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-14 16:02:04.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:04.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.773][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:04.775][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:04.776][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.777][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:04.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:04.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:04.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:04.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:04.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:04.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:04.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:04.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:04.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:04.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:04.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:04.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:04.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:04.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:04.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:04.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:04.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:04.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:04.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:04.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:04.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:04.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:02:04.880][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2026-02-14 16:02:04.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:04.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:04.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:04.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:04.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:04.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:04.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:04.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:04.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:04.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:04.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:04.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:04.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.986][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-14 16:02:04.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-14 16:02:04.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.991][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-14 16:02:04.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-14 16:02:04.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:04.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:04.996][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2026-02-14 16:02:04.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2026-02-14 16:02:04.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.001][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2026-02-14 16:02:05.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2026-02-14 16:02:05.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.115][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.117][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.118][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.152][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.153][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.154][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.160][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:05.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:05.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:05.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:05.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:05.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:05.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.193][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:05.195][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:05.196][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.197][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:05.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:05.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:05.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:05.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:05.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:05.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:05.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.230][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:05.231][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:05.232][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.234][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:05.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:05.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.266][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.269][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.270][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.303][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.306][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.307][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:05.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:05.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.330][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:05.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:05.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.335][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:05.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:05.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.340][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:05.341][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:05.343][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.344][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:05.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:05.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.366][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.377][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.383][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.384][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.386][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.387][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.405][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.410][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.415][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.422][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.423][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.424][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.426][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:05.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:05.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:05.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:05.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:05.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:05.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.457][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:05.458][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:05.460][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.461][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:05.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:05.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.494][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.496][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.498][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:05.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:05.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:05.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:05.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:05.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:05.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.530][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:05.531][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:05.532][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.533][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:05.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:05.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.550][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.553][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.554][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.565][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:05.566][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:05.567][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.569][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.575][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:05.577][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:05.578][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.579][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:05.587][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:05.588][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.589][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.598][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.599][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.606][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.607][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.608][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.610][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.616][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.619][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.620][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.626][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.628][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.629][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.630][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.637][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.638][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.640][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.641][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.647][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:05.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:05.650][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.651][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.658][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:05.659][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:05.660][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.662][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.685][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2026-02-14 16:02:05.734][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2026-02-14 16:02:05.736][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2026-02-14 16:02:05.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:05.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:05.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:05.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:05.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:05.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:05.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-14 16:02:05.757][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.760][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.761][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.790][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:05.792][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:05.793][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.794][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:05.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:05.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.801][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:05.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:05.804][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.805][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:05.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:05.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:05.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:05.815][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.816][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:05.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:05.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.823][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.824][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.825][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.826][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.834][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.835][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.837][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.838][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:05.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.843][ef$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:02:05.845][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.846][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.847][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.849][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:02:05.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:05.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.855][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.856][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.858][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:05.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.864][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:05.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:05.867][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.868][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:05.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.875][ef$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-14 16:02:05.876][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.877][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.879][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-14 16:02:05.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:05.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:05.888][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.889][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:05.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:05.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:05.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:05.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:05.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:02:05.952][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2026-02-14 16:02:05.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:05.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:05.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:05.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:05.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:05.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:05.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.010][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-14 16:02:06.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-14 16:02:06.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.015][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-14 16:02:06.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-14 16:02:06.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2026-02-14 16:02:06.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2026-02-14 16:02:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.025][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2026-02-14 16:02:06.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2026-02-14 16:02:06.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.144][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.147][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.148][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.183][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.185][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:06.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:06.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:06.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:06.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:06.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:06.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.217][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:06.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:06.219][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.220][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:06.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:06.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:06.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:06.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:06.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:06.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.247][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:06.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:06.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.252][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:06.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:06.255][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.256][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:06.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.273][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:02:06.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.288][ef$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:02:06.289][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.290][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.291][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.293][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:02:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.324][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.326][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.332][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.364][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.366][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.367][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:06.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:06.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.389][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:06.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:06.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.394][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:06.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:06.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.399][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:06.400][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:06.402][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.403][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.404][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:06.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:06.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.425][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.430][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.435][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.436][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.437][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.438][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.455][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.460][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.465][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.470][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.472][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.473][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.474][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.475][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:06.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:06.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:06.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:06.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:06.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:06.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.506][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:06.507][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:06.509][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.510][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:06.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:06.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.547][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.548][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.549][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:06.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:06.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:06.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:06.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:06.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:06.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:06.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:06.583][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.584][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:06.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:06.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.601][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.604][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.605][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.611][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:06.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:06.614][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.615][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.622][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:06.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:06.624][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.625][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:06.633][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:06.635][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.636][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.645][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.647][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.653][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.654][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.656][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.657][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.663][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.665][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.666][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.667][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.674][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.675][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.676][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.677][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.684][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.685][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.686][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.687][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.694][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:06.695][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:06.696][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.698][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.704][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:06.705][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:06.706][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.708][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.714][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2026-02-14 16:02:06.716][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2026-02-14 16:02:06.717][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2026-02-14 16:02:06.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:06.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:06.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:06.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:06.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:06.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:06.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-14 16:02:06.739][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.740][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.742][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.743][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.750][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:06.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:06.752][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.753][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.755][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:06.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:06.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.760][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:06.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:06.763][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.764][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:06.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:06.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.771][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:06.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:06.773][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.774][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:06.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.783][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.785][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.791][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.793][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.794][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.795][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.796][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:06.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.802][ef$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:02:06.803][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.804][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.805][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.807][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-02-14 16:02:06.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.812][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.814][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.816][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:06.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.822][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:06.824][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:06.825][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.826][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:06.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:06.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.833][ef$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-14 16:02:06.834][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.835][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.837][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.838][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2026-02-14 16:02:06.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:06.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.843][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:06.844][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:06.846][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.847][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:06.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:06.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:02:06.904][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2026-02-14 16:02:06.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:06.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:06.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:06.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:06.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:06.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.941][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-14 16:02:06.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-14 16:02:06.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.946][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-02-14 16:02:06.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-02-14 16:02:06.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2026-02-14 16:02:06.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2026-02-14 16:02:06.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.956][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2026-02-14 16:02:06.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2026-02-14 16:02:06.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:06.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:06.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:06.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:06.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:06.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:07.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:07.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:07.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:07.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:07.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:07.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:07.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:07.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:07.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:07.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:07.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:07.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:07.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:07.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:07.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:07.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:07.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:07.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.056][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:07.057][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:07.059][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.060][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:07.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:07.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:07.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:07.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:07.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:07.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:07.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:07.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.092][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:07.093][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:07.095][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.096][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:07.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:07.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:07.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:07.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:07.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:07.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:07.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:07.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.134][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:07.135][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:07.136][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.138][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:07.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:07.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:07.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:07.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:07.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:07.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:07.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:07.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:07.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:07.173][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.174][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:07.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:07.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.191][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:07.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:07.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.197][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:07.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:07.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.202][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:07.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:07.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.207][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:07.208][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:07.210][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.211][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.212][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:07.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:07.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:07.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:07.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:07.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:07.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:07.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.242][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:07.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:07.245][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.246][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:07.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:07.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:07.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:07.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:07.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:07.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:07.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:07.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.278][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:07.280][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:07.281][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.282][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:07.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:07.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.299][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:07.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:07.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.304][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:07.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:07.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.309][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:07.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:07.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.319][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:07.320][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:07.322][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.323][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:07.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:07.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:07.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:07.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.345][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:07.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:07.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.350][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:07.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.356][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:07.357][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:07.358][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.359][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.361][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:07.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:07.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:07.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:07.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:07.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:07.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:07.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.393][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:07.394][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:07.395][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.396][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:07.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:07.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:07.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:07.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:07.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:07.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:07.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:07.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.429][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:07.430][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:07.431][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.433][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:07.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:07.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.449][ef$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:07.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:07.452][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.453][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.460][ef$get] Asked field names are: charge.
biodb.TRACE[2026-02-14 16:02:07.461][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-02-14 16:02:07.462][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.464][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.470][ef$get] Asked field names are: formula.
biodb.TRACE[2026-02-14 16:02:07.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-02-14 16:02:07.473][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.474][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-02-14 16:02:07.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-02-14 16:02:07.483][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.484][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.491][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-02-14 16:02:07.492][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-02-14 16:02:07.493][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.495][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.501][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:07.503][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-02-14 16:02:07.504][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.505][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.516][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:07.517][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-02-14 16:02:07.519][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.520][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.526][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:07.528][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:07.529][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.530][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.537][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-02-14 16:02:07.538][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-02-14 16:02:07.539][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.541][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.547][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:07.549][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:07.550][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.551][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:07.557][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-02-14 16:02:07.559][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-02-14 16:02:07.560][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:07.561][ef$get] fields variable is a list.
biodb.INFO [2026-02-14 16:02:07.572][biodb::testThat]
biodb.INFO [2026-02-14 16:02:07.573][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2026-02-14 16:02:07.575][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:07.576][biodb::testThat]
biodb.DEBUG[2026-02-14 16:02:07.579][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2026-02-14 16:02:07.587][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2026-02-14 16:02:07.591][cch$loadContents] Load 3 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2026-02-14 16:02:07.593][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2026-02-14 16:02:07.595][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2026-02-14 16:02:07.596][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2026-02-14 16:02:07.598][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2026-02-14 16:02:07.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:07.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:07.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:07.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:07.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:07.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:07.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2026-02-14 16:02:07.620][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
fscache.INFO [2026-02-14 16:02:07.647][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2026-02-14 16:02:07.649][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:07.650][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:07.652][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:02:14.151][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:02:14.153][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:14.154][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:14.155][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:02:14.628][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:14.629][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:14.630][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:14.632][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:02:15.022][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:02:15.024][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:15.025][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:15.026][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:02:15.436][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:15.438][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:15.439][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:15.441][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:02:15.832][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:02:15.833][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:15.835][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:15.836][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:02:16.240][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:16.242][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:16.243][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:16.245][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:02:16.635][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:02:16.637][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:16.638][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:16.639][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:02:17.042][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:17.043][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:17.045][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:17.046][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:02:17.438][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:02:17.439][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:17.441][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:17.442][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:02:17.846][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:17.847][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:17.848][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:17.850][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:02:18.245][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:02:18.261][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:18.262][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:18.264][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:02:18.669][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:18.671][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:18.672][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:18.674][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:02:19.065][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:02:19.066][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:19.068][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:19.069][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:02:19.479][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:19.480][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:19.481][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:19.483][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:02:19.937][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:02:19.938][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:19.939][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:19.941][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:02:20.461][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:20.462][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:20.463][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:20.465][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:02:20.856][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:02:20.857][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:20.858][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:20.859][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:02:21.446][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:21.448][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:21.449][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:21.450][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-02-14 16:02:21.842][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-02-14 16:02:21.843][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:21.844][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:21.846][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-02-14 16:02:22.249][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
biodb.DEBUG[2026-02-14 16:02:22.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:22.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:22.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:22.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:22.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:22.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:22.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2026-02-14 16:02:22.318][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
fscache.INFO [2026-02-14 16:02:22.366][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2026-02-14 16:02:22.394][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:22.396][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:22.397][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:22.789][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:22.790][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:22.792][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:22.793][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:23.184][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:23.185][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:23.191][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:23.200][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:23.590][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:23.592][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:23.593][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:23.594][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:24.000][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:24.002][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:24.003][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:24.005][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:24.456][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:24.457][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:24.458][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:24.459][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:24.864][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:24.865][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:24.867][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:24.868][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:25.264][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:25.265][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:25.266][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:25.275][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:25.895][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:25.896][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:25.897][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:25.899][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:26.294][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:26.296][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:26.297][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:26.299][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:26.690][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:26.692][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:26.693][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:26.695][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:27.086][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:27.088][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:27.089][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:27.090][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:27.495][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:27.497][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:27.498][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:27.500][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:27.892][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:27.894][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:27.898][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:27.899][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:28.303][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:28.305][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:28.306][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:28.314][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:28.719][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:28.720][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:28.721][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:28.722][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:29.127][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:29.128][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:29.129][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:29.131][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:29.525][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:29.529][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:29.530][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:29.532][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:30.000][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:30.002][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:30.003][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:30.004][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-02-14 16:02:30.397][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-02-14 16:02:30.399][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:30.409][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:30.411][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-02-14 16:02:30.816][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
biodb.DEBUG[2026-02-14 16:02:30.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:30.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:30.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:30.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:30.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:30.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:30.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2026-02-14 16:02:30.851][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
fscache.INFO [2026-02-14 16:02:30.854][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2026-02-14 16:02:30.856][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:30.857][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:30.859][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:31.256][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:31.278][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:31.279][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:31.284][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:31.683][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:31.689][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:31.690][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:31.692][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:32.083][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:32.084][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:32.086][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:32.087][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:32.491][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:32.493][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:32.494][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:32.499][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:32.893][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:32.894][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:32.895][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:32.897][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:33.498][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:33.503][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:33.511][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:33.522][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:34.013][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:34.014][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:34.015][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:34.017][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:34.420][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:34.428][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:34.429][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:34.431][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:34.916][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:34.921][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:34.923][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:34.924][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:35.327][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:35.329][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:35.332][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:35.334][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:35.726][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:35.729][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:35.747][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:35.756][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:36.425][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:36.442][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:36.443][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:36.445][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:36.911][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:36.913][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:36.916][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:36.918][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:37.546][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:37.550][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:37.551][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:37.553][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:38.015][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:38.019][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:38.021][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:38.023][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:38.746][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:38.750][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:38.752][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:38.753][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:39.222][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:39.223][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:39.225][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:39.227][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:39.636][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-02-14 16:02:39.637][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-02-14 16:02:39.639][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-02-14 16:02:39.640][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-02-14 16:02:40.033][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-02-14 16:02:40.034][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-02-14 16:02:40.036][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-02-14 16:02:40.041][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-02-14 16:02:40.735][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
fscache.INFO [2026-02-14 16:02:40.737][cch$saveContents] Save 3 contents to /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2026-02-14 16:02:40.739][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2026-02-14 16:02:40.740][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2026-02-14 16:02:40.742][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2026-02-14 16:02:40.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:40.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:40.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:40.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:40.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:40.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:40.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-14 16:02:40.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:40.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:40.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:40.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:40.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:02:40.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:40.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:40.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:40.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:40.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:40.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:40.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-14 16:02:40.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:40.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:40.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:40.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:40.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:02:40.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-02-14 16:02:40.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:40.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:40.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:40.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:40.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:40.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-02-14 16:02:40.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:40.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:40.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-02-14 16:02:40.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-02-14 16:02:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:40.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-02-14 16:02:40.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-02-14 16:02:40.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:02:40.981][self$createEntryFromContent] Accession numbers: NA, NA, NA.
biodb.DEBUG[2026-02-14 16:02:40.982][self$createEntryFromContent] Found 3 entry/ies without an accession number. Set it/them to NULL.
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:41.230][biodb::testThat]
biodb.INFO [2026-02-14 16:02:41.231][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2026-02-14 16:02:41.233][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:41.234][biodb::testThat]
biodb.TRACE[2026-02-14 16:02:41.238][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:41.239][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:41.241][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:41.242][ef$get] fields variable is a list.
biodb.DEBUG[2026-02-14 16:02:41.247][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:42.341][biodb::testThat]
biodb.INFO [2026-02-14 16:02:42.343][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2026-02-14 16:02:42.344][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:42.345][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:42.780][biodb::testThat]
biodb.INFO [2026-02-14 16:02:42.781][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2026-02-14 16:02:42.782][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:42.784][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:43.072][biodb::testThat]
biodb.INFO [2026-02-14 16:02:43.074][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2026-02-14 16:02:43.075][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:43.076][biodb::testThat]
biodb.INFO [2026-02-14 16:02:43.090][biodb::testThat]
biodb.INFO [2026-02-14 16:02:43.091][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2026-02-14 16:02:43.093][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:43.094][biodb::testThat]
biodb.INFO [2026-02-14 16:02:43.112][biodb::testThat]
biodb.INFO [2026-02-14 16:02:43.114][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2026-02-14 16:02:43.115][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:43.116][biodb::testThat]
biodb.DEBUG[2026-02-14 16:02:43.121][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2026-02-14 16:02:43.764][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2026-02-14 16:02:44.198][biodb::testThat]
biodb.INFO [2026-02-14 16:02:44.199][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2026-02-14 16:02:44.201][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:44.202][biodb::testThat]
biodb.TRACE[2026-02-14 16:02:44.373][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:44.375][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:44.376][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:44.377][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:44.379][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:44.380][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:44.381][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:44.382][ef$get] fields variable is a list.
biodb.INFO [2026-02-14 16:02:44.385][biodb::testThat]
biodb.INFO [2026-02-14 16:02:44.386][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2026-02-14 16:02:44.387][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:44.388][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:44.630][biodb::testThat]
biodb.INFO [2026-02-14 16:02:44.633][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2026-02-14 16:02:44.635][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:44.637][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:44.748][biodb::testThat]
biodb.INFO [2026-02-14 16:02:44.750][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2026-02-14 16:02:44.752][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:44.754][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:44.881][biodb::testThat]
biodb.INFO [2026-02-14 16:02:44.883][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2026-02-14 16:02:44.884][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:44.887][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.TRACE[2026-02-14 16:02:45.097][ef$get] Asked field names are: name.
biodb.TRACE[2026-02-14 16:02:45.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-02-14 16:02:45.100][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:45.102][ef$get] fields variable is a list.
biodb.TRACE[2026-02-14 16:02:45.104][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:45.106][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-02-14 16:02:45.110][ef$get] 1 fields were returned.
biodb.TRACE[2026-02-14 16:02:45.112][ef$get] fields variable is a list.
biodb.INFO [2026-02-14 16:02:45.114][biodb::testThat]
biodb.INFO [2026-02-14 16:02:45.120][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2026-02-14 16:02:45.124][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:45.126][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:45.307][biodb::testThat]
biodb.INFO [2026-02-14 16:02:45.309][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2026-02-14 16:02:45.311][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-02-14 16:02:45.312][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-02-14 16:02:45.500][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2026-02-14 16:02:45.501][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2026-02-14 16:02:45.502][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2026-02-14 16:02:45.503][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-02-14 16:02:45.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-02-14 16:02:45.506][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2026-02-14 16:02:45.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-02-14 16:02:45.508][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2026-02-14 16:02:45.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): RT unit is defined when there is an RT value. ──
Error in `eval_bare(expr, quo_get_env(quo))`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(...)
 4.     └─testthat::quasi_label(enquo(object), label)
 5.       └─rlang::eval_bare(expr, quo_get_env(quo))
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
Error in `entry$getFieldValue(f)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
Expected `any(vapply(entries, is.null, FUN.VALUE = TRUE))` to be FALSE.
Differences:
`actual`:   TRUE 
`expected`: FALSE

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─opt$refEntries$getRealEntry(id)
 4.     └─self$getRealEntries(ids = id)
 5.       └─testthat::expect_false(any(vapply(entries, is.null, FUN.VALUE = TRUE)))
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
Expected `e` to inherit from "character".
Actual inheritance: "NULL"
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_is(e, "BiodbEntry")
── Failure ('test_long_100_generic.R:17:1'): We can search for a compound ──────
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for a compound ────────
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)

[ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]
Error:
! Test failures.
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  ── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
  Error in `e$hasField(mf)`: attempt to apply non-function
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  
  [ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]
  Error:
  ! Test failures.
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.16.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)