| Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-12-01 12:02 -0500 (Mon, 01 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4878 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4610 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4669 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 499/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cyanoFilter 1.18.0 (landing page) Oluwafemi Olusoji
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: cyanoFilter |
| Version: 1.18.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings cyanoFilter_1.18.0.tar.gz |
| StartedAt: 2025-11-28 08:39:51 -0000 (Fri, 28 Nov 2025) |
| EndedAt: 2025-11-28 08:42:01 -0000 (Fri, 28 Nov 2025) |
| EllapsedTime: 130.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cyanoFilter.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings cyanoFilter_1.18.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/cyanoFilter.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cyanoFilter/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘cyanoFilter’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cyanoFilter’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
gateFunc 11.798 0.430 9.689
ggpairsDens 7.314 0.136 7.467
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘cyanoFilter’ ... ** this is package ‘cyanoFilter’ version ‘1.18.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
| name | user | system | elapsed | |
| MarginEvents | 0.969 | 0.012 | 0.986 | |
| PhytoFilter | 0.960 | 0.040 | 1.002 | |
| PhytopFilter | 0.785 | 0.068 | 0.856 | |
| accTest | 0.513 | 0.008 | 0.523 | |
| accuracy | 0.557 | 0.012 | 0.571 | |
| cellmargin | 0.405 | 0.004 | 0.410 | |
| clusterExtract | 1.054 | 0.024 | 1.081 | |
| clusterExtractp | 1.200 | 0.027 | 1.230 | |
| debrisNc | 0.396 | 0.016 | 0.413 | |
| fullFlowframe-MarginEvents-method | 0.386 | 0.020 | 0.407 | |
| fullFlowframe-PhytopFilter-method | 0.753 | 0.016 | 0.771 | |
| fullFlowframe | 0.376 | 0.004 | 0.381 | |
| gateFunc | 11.798 | 0.430 | 9.689 | |
| ggpairsDens | 7.314 | 0.136 | 7.467 | |
| ggplotDens | 0.849 | 0.012 | 0.863 | |
| ggplotDens2 | 1.348 | 0.008 | 1.359 | |
| goodfcs | 0.059 | 0.004 | 0.064 | |
| is.DebrisFilter | 0.001 | 0.000 | 0.000 | |
| is.MarginEvents | 0 | 0 | 0 | |
| is.PhytopFilter | 0.000 | 0.000 | 0.001 | |
| is.flowFrame | 0 | 0 | 0 | |
| is.flowSet | 0.001 | 0.000 | 0.000 | |
| lnTrans | 0.323 | 0.004 | 0.328 | |
| newFlowframe | 0.284 | 0.024 | 0.309 | |
| nona | 0.158 | 0.008 | 0.166 | |
| noneg | 0.214 | 0.000 | 0.214 | |
| oneDgate | 0.278 | 0.012 | 0.291 | |
| pairsPlot | 2.057 | 0.020 | 2.081 | |
| pigmentGate | 0.366 | 0.012 | 0.378 | |
| reducedFlowframe-MarginEvents-method | 0.422 | 0.004 | 0.428 | |
| reducedFlowframe | 0.420 | 0.012 | 0.434 | |
| retain | 0.020 | 0.004 | 0.024 | |
| rowNumbers | 0.288 | 0.024 | 0.314 | |
| summaries-DebrisFilter-method | 0.388 | 0.019 | 0.409 | |
| summaries-MarginEvents-method | 0.426 | 0.004 | 0.431 | |
| summaries-PhytopFilter-method | 0.809 | 0.016 | 0.827 | |
| summaries | 0.416 | 0.004 | 0.421 | |