| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-20 12:04 -0500 (Thu, 20 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4615 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble" | 4610 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4598 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 984/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCool 1.10.0 (landing page) Jacques Serizay
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the HiCool package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCool.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HiCool |
| Version: 1.10.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HiCool |
| StartedAt: 2025-11-17 23:10:40 -0500 (Mon, 17 Nov 2025) |
| EndedAt: 2025-11-17 23:17:38 -0500 (Mon, 17 Nov 2025) |
| EllapsedTime: 418.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HiCool
###
##############################################################################
##############################################################################
* checking for file ‘HiCool/DESCRIPTION’ ... OK
* preparing ‘HiCool’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HiCool.Rmd’ using rmarkdown
Channels:
- conda-forge
- bioconda
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/HiCool/env1/0.1.0
added / updated specs:
- bowtie2==2.5.4
- chromosight==1.6.3
- cooler==0.10.3
- hicstuff==3.2.4
- numpy==1.26.4
- pairtools==1.1.3
- python==3.12.11
- samtools==1.22.1
The following packages will be downloaded:
package | build
---------------------------|-----------------
asciitree-0.3.3 | py_2 6 KB conda-forge
attrs-25.4.0 | pyh71513ae_0 59 KB conda-forge
aws-c-auth-0.9.1 | hc522490_7 108 KB conda-forge
aws-c-cal-0.9.10 | h6b06ba2_1 44 KB conda-forge
aws-c-common-0.12.5 | h8616949_1 224 KB conda-forge
aws-c-compression-0.3.1 | h7df70e9_8 21 KB conda-forge
aws-c-event-stream-0.5.6 | he1d6026_6 51 KB conda-forge
aws-c-http-0.10.7 | hae1f1d1_4 188 KB conda-forge
aws-c-io-0.23.3 | h37ca1a1_3 178 KB conda-forge
aws-c-mqtt-0.13.3 | h8520d3f_10 184 KB conda-forge
aws-c-s3-0.10.1 | h302669f_2 129 KB conda-forge
aws-c-sdkutils-0.2.4 | h7df70e9_3 54 KB conda-forge
aws-checksums-0.2.7 | h7df70e9_4 74 KB conda-forge
aws-crt-cpp-0.35.2 | h8562d08_4 336 KB conda-forge
aws-sdk-cpp-1.11.606 | hb13558a_7 3.2 MB conda-forge
azure-core-cpp-1.16.1 | he2a98a9_0 291 KB conda-forge
azure-identity-cpp-1.13.2 | h0e8e1c8_1 170 KB conda-forge
azure-storage-blobs-cpp-12.15.0| h388f2e7_1 423 KB conda-forge
azure-storage-common-cpp-12.11.0| h56a711b_1 123 KB conda-forge
azure-storage-files-datalake-cpp-12.13.0| h1984e67_1 199 KB conda-forge
bioframe-0.8.0 | pyhdfd78af_0 133 KB bioconda
biopython-1.86 | py312h80b0991_0 3.1 MB conda-forge
bokeh-3.8.1 | pyhd8ed1ab_0 4.8 MB conda-forge
bowtie2-2.5.4 | he4764aa_6 1.5 MB bioconda
brotli-1.2.0 | hb27157a_0 20 KB conda-forge
brotli-bin-1.2.0 | h5c1846c_0 18 KB conda-forge
brotli-python-1.2.0 | py312hbe43a26_0 381 KB conda-forge
bzip2-1.0.8 | h500dc9f_8 129 KB conda-forge
cached-property-1.5.2 | hd8ed1ab_1 4 KB conda-forge
cached_property-1.5.2 | pyha770c72_1 11 KB conda-forge
certifi-2025.11.12 | pyhd8ed1ab_0 153 KB conda-forge
cffi-2.0.0 | py312hf9bc6d9_0 283 KB conda-forge
charset-normalizer-3.4.4 | pyhd8ed1ab_0 50 KB conda-forge
chromosight-1.6.3 | pyhdfd78af_0 124 KB bioconda
click-8.3.1 | pyh707e725_0 90 KB conda-forge
cloudpickle-3.1.2 | pyhd8ed1ab_0 26 KB conda-forge
contourpy-1.3.3 | py312hd099df3_3 263 KB conda-forge
cooler-0.10.3 | pyhdfd78af_0 86 KB bioconda
coreutils-9.5 | h10d778d_0 1.3 MB conda-forge
cycler-0.12.1 | pyhd8ed1ab_1 13 KB conda-forge
cytoolz-1.1.0 | py312h80b0991_1 544 KB conda-forge
dask-2025.11.0 | pyhcf101f3_0 11 KB conda-forge
dask-core-2025.11.0 | pyhcf101f3_0 1.0 MB conda-forge
dill-0.4.0 | pyhd8ed1ab_0 89 KB conda-forge
distributed-2025.11.0 | pyhcf101f3_0 825 KB conda-forge
docopt-0.6.2 | pyhd8ed1ab_2 18 KB conda-forge
fonttools-4.60.1 | py312hacf3034_0 2.7 MB conda-forge
freetype-2.14.1 | h694c41f_0 170 KB conda-forge
fsspec-2025.10.0 | pyhd8ed1ab_0 143 KB conda-forge
gflags-2.2.2 | hac325c4_1005 83 KB conda-forge
glog-0.7.1 | h2790a97_0 114 KB conda-forge
h2-4.3.0 | pyhcf101f3_0 94 KB conda-forge
h5py-3.15.1 |nompi_py312hcf08926_100 1.1 MB conda-forge
hicstuff-3.2.4 | pyhdfd78af_0 90 KB bioconda
hpack-4.1.0 | pyhd8ed1ab_0 30 KB conda-forge
htslib-1.22.1 | h9f635df_0 2.9 MB bioconda
hyperframe-6.1.0 | pyhd8ed1ab_0 17 KB conda-forge
idna-3.11 | pyhd8ed1ab_0 50 KB conda-forge
importlib-metadata-8.7.0 | pyhe01879c_1 34 KB conda-forge
jinja2-3.1.6 | pyhd8ed1ab_0 110 KB conda-forge
joblib-1.5.2 | pyhd8ed1ab_0 219 KB conda-forge
jsonschema-4.25.1 | pyhe01879c_0 80 KB conda-forge
jsonschema-specifications-2025.9.1| pyhcf101f3_0 19 KB conda-forge
k8-1.2 | h2ec61ea_6 8.1 MB bioconda
kiwisolver-1.4.9 | py312h90e26e8_2 67 KB conda-forge
lcms2-2.17 | h72f5680_0 221 KB conda-forge
lerc-4.0.0 | hcca01a6_1 243 KB conda-forge
libabseil-20250512.1 | cxx17_hfc00f1c_0 1.1 MB conda-forge
libarrow-22.0.0 | hd1700fa_4_cpu 4.1 MB conda-forge
libarrow-acero-22.0.0 | h2db2d7d_4_cpu 539 KB conda-forge
libarrow-compute-22.0.0 | h7751554_4_cpu 2.3 MB conda-forge
libarrow-dataset-22.0.0 | h2db2d7d_4_cpu 521 KB conda-forge
libarrow-substrait-22.0.0 | h4653b8a_4_cpu 437 KB conda-forge
libblas-3.11.0 |0_he492b99_openblas 18 KB conda-forge
libbrotlicommon-1.2.0 | h105ed1c_0 77 KB conda-forge
libbrotlidec-1.2.0 | h660c9da_0 30 KB conda-forge
libbrotlienc-1.2.0 | h2338291_0 303 KB conda-forge
libcblas-3.11.0 |0_h9b27e0a_openblas 18 KB conda-forge
libcrc32c-1.1.2 | he49afe7_0 20 KB conda-forge
libdeflate-1.25 | h517ebb2_0 69 KB conda-forge
libevent-2.1.12 | ha90c15b_1 364 KB conda-forge
libexpat-2.7.1 | h21dd04a_0 71 KB conda-forge
libffi-3.4.6 | h281671d_1 50 KB conda-forge
libfreetype-2.14.1 | h694c41f_0 8 KB conda-forge
libfreetype6-2.14.1 | h6912278_0 366 KB conda-forge
libgoogle-cloud-2.39.0 | hed66dea_0 879 KB conda-forge
libgoogle-cloud-storage-2.39.0| h8ac052b_0 531 KB conda-forge
libgrpc-1.73.1 | h451496d_1 5.2 MB conda-forge
libiconv-1.18 | h57a12c2_2 721 KB conda-forge
libjpeg-turbo-3.1.2 | h8616949_0 572 KB conda-forge
liblapack-3.11.0 |0_h859234e_openblas 18 KB conda-forge
liblzma-5.8.1 | hd471939_2 102 KB conda-forge
libopenblas-0.3.30 |openmp_h6006d49_4 6.0 MB conda-forge
libopentelemetry-cpp-1.21.0| h7d3f41d_1 572 KB conda-forge
libopentelemetry-cpp-headers-1.21.0| h694c41f_1 354 KB conda-forge
libparquet-22.0.0 | habb56ca_4_cpu 1.0 MB conda-forge
libpng-1.6.50 | h84aeda2_1 291 KB conda-forge
libprotobuf-6.31.1 | h03562ea_2 3.4 MB conda-forge
libre2-11-2025.11.05 | h554ac88_0 176 KB conda-forge
libsqlite-3.51.0 | h86bffb9_0 964 KB conda-forge
libthrift-0.22.0 | h687e942_1 324 KB conda-forge
libtiff-4.7.1 | ha0a348c_1 395 KB conda-forge
libutf8proc-2.11.1 | h7983711_0 82 KB conda-forge
libwebp-base-1.6.0 | hb807250_0 357 KB conda-forge
libxcb-1.17.0 | hf1f96e2_0 316 KB conda-forge
libxml2-2.15.1 | h23bb396_0 39 KB conda-forge
libxml2-16-2.15.1 | h0ad03eb_0 482 KB conda-forge
locket-1.0.0 | pyhd8ed1ab_0 8 KB conda-forge
lz4-4.4.5 | py312ha706d14_0 41 KB conda-forge
markupsafe-3.0.3 | py312hacf3034_0 24 KB conda-forge
matplotlib-base-3.10.8 | py312h7894933_0 7.9 MB conda-forge
minimap2-2.30 | h7f84b70_0 558 KB bioconda
msgpack-python-1.1.2 | py312hd099df3_1 89 KB conda-forge
multiprocess-0.70.18 | py312h01f6755_2 360 KB conda-forge
munkres-1.1.4 | pyhd8ed1ab_1 15 KB conda-forge
narwhals-2.12.0 | pyhcf101f3_0 262 KB conda-forge
nlohmann_json-3.12.0 | h53ec75d_1 133 KB conda-forge
numpy-1.26.4 | py312he3a82b2_0 6.7 MB conda-forge
openjpeg-2.5.4 | h87e8dc5_0 327 KB conda-forge
orc-2.2.1 | hd1b02dc_0 509 KB conda-forge
packaging-25.0 | pyh29332c3_1 61 KB conda-forge
pairix-0.3.9 | py312hd18bc74_0 99 KB bioconda
pairtools-1.1.3 | py312h6146111_0 5.1 MB bioconda
pandas-2.3.3 | py312h86abcb1_1 13.6 MB conda-forge
partd-1.4.2 | pyhd8ed1ab_0 20 KB conda-forge
pbgzip-2016.08.04 | ha904f4b_6 30 KB bioconda
perl-5.32.1 | 7_h10d778d_perl5 11.8 MB conda-forge
pillow-12.0.0 | py312h6000a1f_0 939 KB conda-forge
pip-25.3 | pyh8b19718_0 1.1 MB conda-forge
prometheus-cpp-1.3.0 | h7802330_0 175 KB conda-forge
psutil-7.1.3 | py312h01f6755_0 494 KB conda-forge
pthread-stubs-0.4 | h00291cd_1002 8 KB conda-forge
pyarrow-22.0.0 | py312hb401068_0 26 KB conda-forge
pyarrow-core-22.0.0 |py312hefc66a4_0_cpu 3.8 MB conda-forge
pyfaidx-0.9.0.3 | pyhdfd78af_0 35 KB bioconda
pyfastx-2.2.0 | py312h3f31e45_1 733 KB bioconda
pyparsing-3.2.5 | pyhcf101f3_0 102 KB conda-forge
pysam-0.23.3 | py312hc68ed8a_1 4.1 MB bioconda
python-3.12.11 |h9ccd52b_0_cpython 12.9 MB conda-forge
python-dateutil-2.9.0.post0| pyhe01879c_2 228 KB conda-forge
python-tzdata-2025.2 | pyhd8ed1ab_0 141 KB conda-forge
python_abi-3.12 | 8_cp312 7 KB conda-forge
pytz-2025.2 | pyhd8ed1ab_0 185 KB conda-forge
pyvcf3-1.0.4 | py312h73b7c68_0 1.1 MB bioconda
pyyaml-6.0.3 | py312hacf3034_0 188 KB conda-forge
qhull-2020.2 | h3c5361c_5 516 KB conda-forge
re2-2025.11.05 | h7df6414_0 27 KB conda-forge
readline-8.2 | h7cca4af_2 251 KB conda-forge
referencing-0.37.0 | pyhcf101f3_0 51 KB conda-forge
requests-2.32.5 | pyhd8ed1ab_0 58 KB conda-forge
rpds-py-0.29.0 | py312h8a6388b_0 363 KB conda-forge
samtools-1.22.1 | ha21ef43_0 485 KB bioconda
scikit-learn-1.7.2 | py312hfee4f84_0 8.6 MB conda-forge
scipy-1.16.3 | py312he2acf2f_1 14.5 MB conda-forge
setuptools-80.9.0 | pyhff2d567_0 731 KB conda-forge
simplejson-3.20.2 | py312h80b0991_1 129 KB conda-forge
six-1.17.0 | pyhe01879c_1 18 KB conda-forge
snappy-1.2.2 | h01f5ddf_1 39 KB conda-forge
sortedcontainers-2.4.0 | pyhd8ed1ab_1 28 KB conda-forge
tblib-3.2.2 | pyhcf101f3_0 19 KB conda-forge
threadpoolctl-3.6.0 | pyhecae5ae_0 23 KB conda-forge
tk-8.6.13 | hf689a15_3 3.1 MB conda-forge
toolz-1.1.0 | pyhd8ed1ab_1 53 KB conda-forge
tornado-6.5.2 | py312h80b0991_2 829 KB conda-forge
typing_extensions-4.15.0 | pyhcf101f3_0 50 KB conda-forge
tzdata-2025b | h78e105d_0 120 KB conda-forge
unicodedata2-17.0.0 | py312h80b0991_1 394 KB conda-forge
urllib3-2.5.0 | pyhd8ed1ab_0 99 KB conda-forge
xorg-libxau-1.0.12 | h8616949_1 13 KB conda-forge
xorg-libxdmcp-1.1.5 | h8616949_1 19 KB conda-forge
xyzservices-2025.10.0 | pyhd8ed1ab_0 49 KB conda-forge
yaml-0.2.5 | h4132b18_3 78 KB conda-forge
zict-3.0.0 | pyhd8ed1ab_1 35 KB conda-forge
zipp-3.23.0 | pyhd8ed1ab_0 22 KB conda-forge
zlib-1.3.1 | hd23fc13_2 86 KB conda-forge
zlib-ng-2.2.5 | h55e386d_0 107 KB conda-forge
zstandard-0.25.0 | py312h01f6755_1 452 KB conda-forge
------------------------------------------------------------
Total: 175.3 MB
The following NEW packages will be INSTALLED:
asciitree conda-forge/noarch::asciitree-0.3.3-py_2
attrs conda-forge/noarch::attrs-25.4.0-pyh71513ae_0
aws-c-auth conda-forge/osx-64::aws-c-auth-0.9.1-hc522490_7
aws-c-cal conda-forge/osx-64::aws-c-cal-0.9.10-h6b06ba2_1
aws-c-common conda-forge/osx-64::aws-c-common-0.12.5-h8616949_1
aws-c-compression conda-forge/osx-64::aws-c-compression-0.3.1-h7df70e9_8
aws-c-event-stream conda-forge/osx-64::aws-c-event-stream-0.5.6-he1d6026_6
aws-c-http conda-forge/osx-64::aws-c-http-0.10.7-hae1f1d1_4
aws-c-io conda-forge/osx-64::aws-c-io-0.23.3-h37ca1a1_3
aws-c-mqtt conda-forge/osx-64::aws-c-mqtt-0.13.3-h8520d3f_10
aws-c-s3 conda-forge/osx-64::aws-c-s3-0.10.1-h302669f_2
aws-c-sdkutils conda-forge/osx-64::aws-c-sdkutils-0.2.4-h7df70e9_3
aws-checksums conda-forge/osx-64::aws-checksums-0.2.7-h7df70e9_4
aws-crt-cpp conda-forge/osx-64::aws-crt-cpp-0.35.2-h8562d08_4
aws-sdk-cpp conda-forge/osx-64::aws-sdk-cpp-1.11.606-hb13558a_7
azure-core-cpp conda-forge/osx-64::azure-core-cpp-1.16.1-he2a98a9_0
azure-identity-cpp conda-forge/osx-64::azure-identity-cpp-1.13.2-h0e8e1c8_1
azure-storage-blo~ conda-forge/osx-64::azure-storage-blobs-cpp-12.15.0-h388f2e7_1
azure-storage-com~ conda-forge/osx-64::azure-storage-common-cpp-12.11.0-h56a711b_1
azure-storage-fil~ conda-forge/osx-64::azure-storage-files-datalake-cpp-12.13.0-h1984e67_1
bioframe bioconda/noarch::bioframe-0.8.0-pyhdfd78af_0
biopython conda-forge/osx-64::biopython-1.86-py312h80b0991_0
bokeh conda-forge/noarch::bokeh-3.8.1-pyhd8ed1ab_0
bowtie2 bioconda/osx-64::bowtie2-2.5.4-he4764aa_6
brotli conda-forge/osx-64::brotli-1.2.0-hb27157a_0
brotli-bin conda-forge/osx-64::brotli-bin-1.2.0-h5c1846c_0
brotli-python conda-forge/osx-64::brotli-python-1.2.0-py312hbe43a26_0
bzip2 conda-forge/osx-64::bzip2-1.0.8-h500dc9f_8
c-ares conda-forge/osx-64::c-ares-1.34.5-hf13058a_0
ca-certificates conda-forge/noarch::ca-certificates-2025.11.12-hbd8a1cb_0
cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1
cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1
certifi conda-forge/noarch::certifi-2025.11.12-pyhd8ed1ab_0
cffi conda-forge/osx-64::cffi-2.0.0-py312hf9bc6d9_0
charset-normalizer conda-forge/noarch::charset-normalizer-3.4.4-pyhd8ed1ab_0
chromosight bioconda/noarch::chromosight-1.6.3-pyhdfd78af_0
click conda-forge/noarch::click-8.3.1-pyh707e725_0
cloudpickle conda-forge/noarch::cloudpickle-3.1.2-pyhd8ed1ab_0
contourpy conda-forge/osx-64::contourpy-1.3.3-py312hd099df3_3
cooler bioconda/noarch::cooler-0.10.3-pyhdfd78af_0
coreutils conda-forge/osx-64::coreutils-9.5-h10d778d_0
cycler conda-forge/noarch::cycler-0.12.1-pyhd8ed1ab_1
cytoolz conda-forge/osx-64::cytoolz-1.1.0-py312h80b0991_1
dask conda-forge/noarch::dask-2025.11.0-pyhcf101f3_0
dask-core conda-forge/noarch::dask-core-2025.11.0-pyhcf101f3_0
dill conda-forge/noarch::dill-0.4.0-pyhd8ed1ab_0
distributed conda-forge/noarch::distributed-2025.11.0-pyhcf101f3_0
docopt conda-forge/noarch::docopt-0.6.2-pyhd8ed1ab_2
fonttools conda-forge/osx-64::fonttools-4.60.1-py312hacf3034_0
freetype conda-forge/osx-64::freetype-2.14.1-h694c41f_0
fsspec conda-forge/noarch::fsspec-2025.10.0-pyhd8ed1ab_0
gflags conda-forge/osx-64::gflags-2.2.2-hac325c4_1005
glog conda-forge/osx-64::glog-0.7.1-h2790a97_0
h2 conda-forge/noarch::h2-4.3.0-pyhcf101f3_0
h5py conda-forge/osx-64::h5py-3.15.1-nompi_py312hcf08926_100
hdf5 conda-forge/osx-64::hdf5-1.14.6-nompi_hc8237f9_103
hicstuff bioconda/noarch::hicstuff-3.2.4-pyhdfd78af_0
hpack conda-forge/noarch::hpack-4.1.0-pyhd8ed1ab_0
htslib bioconda/osx-64::htslib-1.22.1-h9f635df_0
hyperframe conda-forge/noarch::hyperframe-6.1.0-pyhd8ed1ab_0
idna conda-forge/noarch::idna-3.11-pyhd8ed1ab_0
importlib-metadata conda-forge/noarch::importlib-metadata-8.7.0-pyhe01879c_1
jinja2 conda-forge/noarch::jinja2-3.1.6-pyhd8ed1ab_0
joblib conda-forge/noarch::joblib-1.5.2-pyhd8ed1ab_0
jsonschema conda-forge/noarch::jsonschema-4.25.1-pyhe01879c_0
jsonschema-specif~ conda-forge/noarch::jsonschema-specifications-2025.9.1-pyhcf101f3_0
k8 bioconda/osx-64::k8-1.2-h2ec61ea_6
kiwisolver conda-forge/osx-64::kiwisolver-1.4.9-py312h90e26e8_2
krb5 conda-forge/osx-64::krb5-1.21.3-h37d8d59_0
lcms2 conda-forge/osx-64::lcms2-2.17-h72f5680_0
lerc conda-forge/osx-64::lerc-4.0.0-hcca01a6_1
libabseil conda-forge/osx-64::libabseil-20250512.1-cxx17_hfc00f1c_0
libaec conda-forge/osx-64::libaec-1.1.4-ha6bc127_0
libarrow conda-forge/osx-64::libarrow-22.0.0-hd1700fa_4_cpu
libarrow-acero conda-forge/osx-64::libarrow-acero-22.0.0-h2db2d7d_4_cpu
libarrow-compute conda-forge/osx-64::libarrow-compute-22.0.0-h7751554_4_cpu
libarrow-dataset conda-forge/osx-64::libarrow-dataset-22.0.0-h2db2d7d_4_cpu
libarrow-substrait conda-forge/osx-64::libarrow-substrait-22.0.0-h4653b8a_4_cpu
libblas conda-forge/osx-64::libblas-3.11.0-0_he492b99_openblas
libbrotlicommon conda-forge/osx-64::libbrotlicommon-1.2.0-h105ed1c_0
libbrotlidec conda-forge/osx-64::libbrotlidec-1.2.0-h660c9da_0
libbrotlienc conda-forge/osx-64::libbrotlienc-1.2.0-h2338291_0
libcblas conda-forge/osx-64::libcblas-3.11.0-0_h9b27e0a_openblas
libcrc32c conda-forge/osx-64::libcrc32c-1.1.2-he49afe7_0
libcurl conda-forge/osx-64::libcurl-8.17.0-h7dd4100_0
libcxx conda-forge/osx-64::libcxx-21.1.5-h3d58e20_0
libdeflate conda-forge/osx-64::libdeflate-1.25-h517ebb2_0
libedit conda-forge/osx-64::libedit-3.1.20250104-pl5321ha958ccf_0
libev conda-forge/osx-64::libev-4.33-h10d778d_2
libevent conda-forge/osx-64::libevent-2.1.12-ha90c15b_1
libexpat conda-forge/osx-64::libexpat-2.7.1-h21dd04a_0
libffi conda-forge/osx-64::libffi-3.4.6-h281671d_1
libfreetype conda-forge/osx-64::libfreetype-2.14.1-h694c41f_0
libfreetype6 conda-forge/osx-64::libfreetype6-2.14.1-h6912278_0
libgfortran conda-forge/osx-64::libgfortran-15.2.0-h306097a_1
libgfortran5 conda-forge/osx-64::libgfortran5-15.2.0-h336fb69_1
libgoogle-cloud conda-forge/osx-64::libgoogle-cloud-2.39.0-hed66dea_0
libgoogle-cloud-s~ conda-forge/osx-64::libgoogle-cloud-storage-2.39.0-h8ac052b_0
libgrpc conda-forge/osx-64::libgrpc-1.73.1-h451496d_1
libiconv conda-forge/osx-64::libiconv-1.18-h57a12c2_2
libjpeg-turbo conda-forge/osx-64::libjpeg-turbo-3.1.2-h8616949_0
liblapack conda-forge/osx-64::liblapack-3.11.0-0_h859234e_openblas
liblzma conda-forge/osx-64::liblzma-5.8.1-hd471939_2
libnghttp2 conda-forge/osx-64::libnghttp2-1.67.0-h3338091_0
libopenblas conda-forge/osx-64::libopenblas-0.3.30-openmp_h6006d49_4
libopentelemetry-~ conda-forge/osx-64::libopentelemetry-cpp-1.21.0-h7d3f41d_1
libopentelemetry-~ conda-forge/osx-64::libopentelemetry-cpp-headers-1.21.0-h694c41f_1
libparquet conda-forge/osx-64::libparquet-22.0.0-habb56ca_4_cpu
libpng conda-forge/osx-64::libpng-1.6.50-h84aeda2_1
libprotobuf conda-forge/osx-64::libprotobuf-6.31.1-h03562ea_2
libre2-11 conda-forge/osx-64::libre2-11-2025.11.05-h554ac88_0
libsqlite conda-forge/osx-64::libsqlite-3.51.0-h86bffb9_0
libssh2 conda-forge/osx-64::libssh2-1.11.1-hed3591d_0
libthrift conda-forge/osx-64::libthrift-0.22.0-h687e942_1
libtiff conda-forge/osx-64::libtiff-4.7.1-ha0a348c_1
libutf8proc conda-forge/osx-64::libutf8proc-2.11.1-h7983711_0
libwebp-base conda-forge/osx-64::libwebp-base-1.6.0-hb807250_0
libxcb conda-forge/osx-64::libxcb-1.17.0-hf1f96e2_0
libxml2 conda-forge/osx-64::libxml2-2.15.1-h23bb396_0
libxml2-16 conda-forge/osx-64::libxml2-16-2.15.1-h0ad03eb_0
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
llvm-openmp conda-forge/osx-64::llvm-openmp-21.1.5-h472b3d1_2
locket conda-forge/noarch::locket-1.0.0-pyhd8ed1ab_0
lz4 conda-forge/osx-64::lz4-4.4.5-py312ha706d14_0
lz4-c conda-forge/osx-64::lz4-c-1.10.0-h240833e_1
markupsafe conda-forge/osx-64::markupsafe-3.0.3-py312hacf3034_0
matplotlib-base conda-forge/osx-64::matplotlib-base-3.10.8-py312h7894933_0
minimap2 bioconda/osx-64::minimap2-2.30-h7f84b70_0
msgpack-python conda-forge/osx-64::msgpack-python-1.1.2-py312hd099df3_1
multiprocess conda-forge/osx-64::multiprocess-0.70.18-py312h01f6755_2
munkres conda-forge/noarch::munkres-1.1.4-pyhd8ed1ab_1
narwhals conda-forge/noarch::narwhals-2.12.0-pyhcf101f3_0
ncurses conda-forge/osx-64::ncurses-6.5-h0622a9a_3
nlohmann_json conda-forge/osx-64::nlohmann_json-3.12.0-h53ec75d_1
numpy conda-forge/osx-64::numpy-1.26.4-py312he3a82b2_0
openjpeg conda-forge/osx-64::openjpeg-2.5.4-h87e8dc5_0
openssl conda-forge/osx-64::openssl-3.6.0-h230baf5_0
orc conda-forge/osx-64::orc-2.2.1-hd1b02dc_0
packaging conda-forge/noarch::packaging-25.0-pyh29332c3_1
pairix bioconda/osx-64::pairix-0.3.9-py312hd18bc74_0
pairtools bioconda/osx-64::pairtools-1.1.3-py312h6146111_0
pandas conda-forge/osx-64::pandas-2.3.3-py312h86abcb1_1
partd conda-forge/noarch::partd-1.4.2-pyhd8ed1ab_0
pbgzip bioconda/osx-64::pbgzip-2016.08.04-ha904f4b_6
perl conda-forge/osx-64::perl-5.32.1-7_h10d778d_perl5
pillow conda-forge/osx-64::pillow-12.0.0-py312h6000a1f_0
pip conda-forge/noarch::pip-25.3-pyh8b19718_0
prometheus-cpp conda-forge/osx-64::prometheus-cpp-1.3.0-h7802330_0
psutil conda-forge/osx-64::psutil-7.1.3-py312h01f6755_0
pthread-stubs conda-forge/osx-64::pthread-stubs-0.4-h00291cd_1002
pyarrow conda-forge/osx-64::pyarrow-22.0.0-py312hb401068_0
pyarrow-core conda-forge/osx-64::pyarrow-core-22.0.0-py312hefc66a4_0_cpu
pycparser conda-forge/noarch::pycparser-2.22-pyh29332c3_1
pyfaidx bioconda/noarch::pyfaidx-0.9.0.3-pyhdfd78af_0
pyfastx bioconda/osx-64::pyfastx-2.2.0-py312h3f31e45_1
pyparsing conda-forge/noarch::pyparsing-3.2.5-pyhcf101f3_0
pysam bioconda/osx-64::pysam-0.23.3-py312hc68ed8a_1
pysocks conda-forge/noarch::pysocks-1.7.1-pyha55dd90_7
python conda-forge/osx-64::python-3.12.11-h9ccd52b_0_cpython
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhe01879c_2
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2025.2-pyhd8ed1ab_0
pyvcf3 bioconda/osx-64::pyvcf3-1.0.4-py312h73b7c68_0
pyyaml conda-forge/osx-64::pyyaml-6.0.3-py312hacf3034_0
qhull conda-forge/osx-64::qhull-2020.2-h3c5361c_5
re2 conda-forge/osx-64::re2-2025.11.05-h7df6414_0
readline conda-forge/osx-64::readline-8.2-h7cca4af_2
referencing conda-forge/noarch::referencing-0.37.0-pyhcf101f3_0
requests conda-forge/noarch::requests-2.32.5-pyhd8ed1ab_0
rpds-py conda-forge/osx-64::rpds-py-0.29.0-py312h8a6388b_0
samtools bioconda/osx-64::samtools-1.22.1-ha21ef43_0
scikit-learn conda-forge/osx-64::scikit-learn-1.7.2-py312hfee4f84_0
scipy conda-forge/osx-64::scipy-1.16.3-py312he2acf2f_1
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
simplejson conda-forge/osx-64::simplejson-3.20.2-py312h80b0991_1
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
snappy conda-forge/osx-64::snappy-1.2.2-h01f5ddf_1
sortedcontainers conda-forge/noarch::sortedcontainers-2.4.0-pyhd8ed1ab_1
tblib conda-forge/noarch::tblib-3.2.2-pyhcf101f3_0
threadpoolctl conda-forge/noarch::threadpoolctl-3.6.0-pyhecae5ae_0
tk conda-forge/osx-64::tk-8.6.13-hf689a15_3
toolz conda-forge/noarch::toolz-1.1.0-pyhd8ed1ab_1
tornado conda-forge/osx-64::tornado-6.5.2-py312h80b0991_2
typing_extensions conda-forge/noarch::typing_extensions-4.15.0-pyhcf101f3_0
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
unicodedata2 conda-forge/osx-64::unicodedata2-17.0.0-py312h80b0991_1
urllib3 conda-forge/noarch::urllib3-2.5.0-pyhd8ed1ab_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
xorg-libxau conda-forge/osx-64::xorg-libxau-1.0.12-h8616949_1
xorg-libxdmcp conda-forge/osx-64::xorg-libxdmcp-1.1.5-h8616949_1
xyzservices conda-forge/noarch::xyzservices-2025.10.0-pyhd8ed1ab_0
yaml conda-forge/osx-64::yaml-0.2.5-h4132b18_3
zict conda-forge/noarch::zict-3.0.0-pyhd8ed1ab_1
zipp conda-forge/noarch::zipp-3.23.0-pyhd8ed1ab_0
zlib conda-forge/osx-64::zlib-1.3.1-hd23fc13_2
zlib-ng conda-forge/osx-64::zlib-ng-2.2.5-h55e386d_0
zstandard conda-forge/osx-64::zstandard-0.25.0-py312h01f6755_1
zstd conda-forge/osx-64::zstd-1.5.7-h8210216_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Quitting from HiCool.Rmd:70-80 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `py_module_import()`:
! ModuleNotFoundError: No module named 'hicstuff'
Run `reticulate::py_last_error()` for details.
---
Backtrace:
▆
1. └─HiCool::HiCool(...)
2. └─reticulate::import("hicstuff")
3. └─reticulate:::py_module_import(module, convert = convert)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'HiCool.Rmd' failed with diagnostics:
ModuleNotFoundError: No module named 'hicstuff'
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘HiCool.Rmd’
SUMMARY: processing the following file failed:
‘HiCool.Rmd’
Error: Vignette re-building failed.
Execution halted