| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-20 12:06 -0500 (Thu, 20 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4615 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble" | 4610 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4598 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 984/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCool 1.10.0 (landing page) Jacques Serizay
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the HiCool package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCool.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HiCool |
| Version: 1.10.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HiCool |
| StartedAt: 2025-11-17 21:55:41 -0500 (Mon, 17 Nov 2025) |
| EndedAt: 2025-11-17 21:57:01 -0500 (Mon, 17 Nov 2025) |
| EllapsedTime: 79.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HiCool
###
##############################################################################
##############################################################################
* checking for file ‘HiCool/DESCRIPTION’ ... OK
* preparing ‘HiCool’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HiCool.Rmd’ using rmarkdown
Channels:
- conda-forge
- bioconda
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/HiCool/env1/0.1.0
added / updated specs:
- bowtie2==2.5.4
- chromosight==1.6.3
- cooler==0.10.3
- hicstuff==3.2.4
- numpy==1.26.4
- pairtools==1.1.3
- python==3.12.11
- samtools==1.22.1
The following packages will be downloaded:
package | build
---------------------------|-----------------
asciitree-0.3.3 | py_2 6 KB conda-forge
attrs-25.4.0 | pyh71513ae_0 59 KB conda-forge
aws-c-auth-0.9.1 | h8818502_7 104 KB conda-forge
aws-c-cal-0.9.10 | hca30140_1 44 KB conda-forge
aws-c-common-0.12.5 | hc919400_1 218 KB conda-forge
aws-c-compression-0.3.1 | h61d5560_8 21 KB conda-forge
aws-c-event-stream-0.5.6 | h18584fc_6 51 KB conda-forge
aws-c-http-0.10.7 | hcd69b29_4 167 KB conda-forge
aws-c-io-0.23.3 | h9710c81_3 172 KB conda-forge
aws-c-mqtt-0.13.3 | ha255ef3_10 147 KB conda-forge
aws-c-s3-0.10.1 | hd860258_2 125 KB conda-forge
aws-c-sdkutils-0.2.4 | h61d5560_3 52 KB conda-forge
aws-checksums-0.2.7 | h61d5560_4 72 KB conda-forge
aws-crt-cpp-0.35.2 | h5596a46_4 260 KB conda-forge
aws-sdk-cpp-1.11.606 | h95becb6_7 3.0 MB conda-forge
azure-core-cpp-1.16.1 | h88fedcc_0 283 KB conda-forge
azure-identity-cpp-1.13.2 | h853621b_1 163 KB conda-forge
azure-storage-blobs-cpp-12.15.0| h10d327b_1 415 KB conda-forge
azure-storage-common-cpp-12.11.0| h7e4aa5d_1 119 KB conda-forge
azure-storage-files-datalake-cpp-12.13.0| hb288d13_1 193 KB conda-forge
bioframe-0.8.0 | pyhdfd78af_0 133 KB bioconda
biopython-1.86 | py312h4409184_0 3.1 MB conda-forge
bokeh-3.8.1 | pyhd8ed1ab_0 4.8 MB conda-forge
bowtie2-2.5.4 | hdd4e3a4_6 1.4 MB bioconda
brotli-1.2.0 | hca488c2_0 20 KB conda-forge
brotli-bin-1.2.0 | hce9b42c_0 18 KB conda-forge
brotli-python-1.2.0 | py312hcae0c51_0 351 KB conda-forge
bzip2-1.0.8 | hd037594_8 122 KB conda-forge
cached-property-1.5.2 | hd8ed1ab_1 4 KB conda-forge
cached_property-1.5.2 | pyha770c72_1 11 KB conda-forge
certifi-2025.11.12 | pyhd8ed1ab_0 153 KB conda-forge
cffi-2.0.0 | py312hb65edc0_0 281 KB conda-forge
charset-normalizer-3.4.4 | pyhd8ed1ab_0 50 KB conda-forge
chromosight-1.6.3 | pyhdfd78af_0 124 KB bioconda
click-8.3.1 | pyh707e725_0 90 KB conda-forge
cloudpickle-3.1.2 | pyhd8ed1ab_0 26 KB conda-forge
contourpy-1.3.3 | py312h84eede6_3 252 KB conda-forge
cooler-0.10.3 | pyhdfd78af_0 86 KB bioconda
coreutils-9.5 | h93a5062_0 1.4 MB conda-forge
cycler-0.12.1 | pyhd8ed1ab_1 13 KB conda-forge
cytoolz-1.1.0 | py312h4409184_1 543 KB conda-forge
dask-2025.11.0 | pyhcf101f3_0 11 KB conda-forge
dask-core-2025.11.0 | pyhcf101f3_0 1.0 MB conda-forge
dill-0.4.0 | pyhd8ed1ab_0 89 KB conda-forge
distributed-2025.11.0 | pyhcf101f3_0 825 KB conda-forge
docopt-0.6.2 | pyhd8ed1ab_2 18 KB conda-forge
fonttools-4.60.1 | py312h5748b74_0 2.7 MB conda-forge
freetype-2.14.1 | hce30654_0 169 KB conda-forge
fsspec-2025.10.0 | pyhd8ed1ab_0 143 KB conda-forge
gflags-2.2.2 | hf9b8971_1005 80 KB conda-forge
glog-0.7.1 | heb240a5_0 110 KB conda-forge
h2-4.3.0 | pyhcf101f3_0 94 KB conda-forge
h5py-3.15.1 |nompi_py312h4eecd6b_100 1.1 MB conda-forge
hicstuff-3.2.4 | pyhdfd78af_0 90 KB bioconda
hpack-4.1.0 | pyhd8ed1ab_0 30 KB conda-forge
htslib-1.22.1 | hfcd771d_0 2.5 MB bioconda
hyperframe-6.1.0 | pyhd8ed1ab_0 17 KB conda-forge
idna-3.11 | pyhd8ed1ab_0 50 KB conda-forge
importlib-metadata-8.7.0 | pyhe01879c_1 34 KB conda-forge
jinja2-3.1.6 | pyhd8ed1ab_0 110 KB conda-forge
joblib-1.5.2 | pyhd8ed1ab_0 219 KB conda-forge
jsonschema-4.25.1 | pyhe01879c_0 80 KB conda-forge
jsonschema-specifications-2025.9.1| pyhcf101f3_0 19 KB conda-forge
k8-1.2 | hda5e58c_6 7.7 MB bioconda
kiwisolver-1.4.9 | py312hd8c8125_2 66 KB conda-forge
lcms2-2.17 | h7eeda09_0 207 KB conda-forge
lerc-4.0.0 | hd64df32_1 184 KB conda-forge
libabseil-20250512.1 | cxx17_hd41c47c_0 1.1 MB conda-forge
libarrow-22.0.0 | h4a3aeba_4_cpu 4.0 MB conda-forge
libarrow-acero-22.0.0 | hc317990_4_cpu 506 KB conda-forge
libarrow-compute-22.0.0 | h75845d1_4_cpu 2.1 MB conda-forge
libarrow-dataset-22.0.0 | hc317990_4_cpu 503 KB conda-forge
libarrow-substrait-22.0.0 | h144af7f_4_cpu 442 KB conda-forge
libblas-3.11.0 |0_h51639a9_openblas 18 KB conda-forge
libbrotlicommon-1.2.0 | h87ba0bc_0 77 KB conda-forge
libbrotlidec-1.2.0 | h95a88de_0 29 KB conda-forge
libbrotlienc-1.2.0 | hb1b9735_0 284 KB conda-forge
libcblas-3.11.0 |0_hb0561ab_openblas 18 KB conda-forge
libcrc32c-1.1.2 | hbdafb3b_0 18 KB conda-forge
libdeflate-1.22 | hd74edd7_0 53 KB conda-forge
libevent-2.1.12 | h2757513_1 360 KB conda-forge
libexpat-2.7.1 | hec049ff_0 64 KB conda-forge
libffi-3.4.6 | h1da3d7d_1 39 KB conda-forge
libfreetype-2.14.1 | hce30654_0 8 KB conda-forge
libfreetype6-2.14.1 | h6da58f4_0 339 KB conda-forge
libgoogle-cloud-2.39.0 | head0a95_0 856 KB conda-forge
libgoogle-cloud-storage-2.39.0| hfa3a374_0 513 KB conda-forge
libgrpc-1.73.1 | h3063b79_1 5.1 MB conda-forge
libiconv-1.18 | h23cfdf5_2 733 KB conda-forge
libjpeg-turbo-3.1.2 | hc919400_0 538 KB conda-forge
liblapack-3.11.0 |0_hd9741b5_openblas 18 KB conda-forge
liblzma-5.8.1 | h39f12f2_2 90 KB conda-forge
libopenblas-0.3.30 |openmp_ha158390_3 4.1 MB conda-forge
libopentelemetry-cpp-1.21.0| he15edb5_1 551 KB conda-forge
libopentelemetry-cpp-headers-1.21.0| hce30654_1 355 KB conda-forge
libparquet-22.0.0 | h0ac143b_4_cpu 1019 KB conda-forge
libpng-1.6.50 | h280e0eb_1 280 KB conda-forge
libprotobuf-6.31.1 | h658db43_2 2.8 MB conda-forge
libre2-11-2025.11.05 | h91c62da_0 162 KB conda-forge
libsqlite-3.51.0 | h8adb53f_0 888 KB conda-forge
libthrift-0.22.0 | h14a376c_1 316 KB conda-forge
libtiff-4.7.0 | ha962b0a_2 362 KB conda-forge
libutf8proc-2.11.1 | hd2415e0_0 86 KB conda-forge
libwebp-base-1.6.0 | h07db88b_0 288 KB conda-forge
libxcb-1.17.0 | hdb1d25a_0 316 KB conda-forge
libxml2-2.15.1 | h9329255_0 40 KB conda-forge
libxml2-16-2.15.1 | h0ff4647_0 454 KB conda-forge
locket-1.0.0 | pyhd8ed1ab_0 8 KB conda-forge
lz4-4.4.5 | py312h2b25a0d_0 122 KB conda-forge
markupsafe-3.0.3 | py312h5748b74_0 25 KB conda-forge
matplotlib-base-3.10.8 | py312h605b88b_0 7.9 MB conda-forge
minimap2-2.30 | hba9b596_0 482 KB bioconda
msgpack-python-1.1.2 | py312h84eede6_1 89 KB conda-forge
multiprocess-0.70.18 | py312h37e1c23_2 362 KB conda-forge
munkres-1.1.4 | pyhd8ed1ab_1 15 KB conda-forge
narwhals-2.12.0 | pyhcf101f3_0 262 KB conda-forge
nlohmann_json-3.12.0 | h248ca61_1 134 KB conda-forge
numpy-1.26.4 | py312h8442bc7_0 5.8 MB conda-forge
openjpeg-2.5.3 | h889cd5d_1 313 KB conda-forge
orc-2.2.1 | h4fd0076_0 476 KB conda-forge
packaging-25.0 | pyh29332c3_1 61 KB conda-forge
pairix-0.3.9 | py312h93f676b_0 97 KB bioconda
pairtools-1.1.3 | py312h6d1645c_0 5.2 MB bioconda
pandas-2.3.3 | py312h5978115_1 13.4 MB conda-forge
partd-1.4.2 | pyhd8ed1ab_0 20 KB conda-forge
perl-5.32.1 | 7_h4614cfb_perl5 13.8 MB conda-forge
pillow-11.3.0 | py312h2525f64_3 928 KB conda-forge
pip-25.3 | pyh8b19718_0 1.1 MB conda-forge
prometheus-cpp-1.3.0 | h0967b3e_0 169 KB conda-forge
psutil-7.1.3 | py312h37e1c23_0 496 KB conda-forge
pthread-stubs-0.4 | hd74edd7_1002 8 KB conda-forge
pyarrow-22.0.0 | py312h1f38498_0 26 KB conda-forge
pyarrow-core-22.0.0 |py312hea229ce_0_cpu 3.7 MB conda-forge
pyfaidx-0.9.0.3 | pyhdfd78af_0 35 KB bioconda
pyfastx-2.2.0 | py312h689eaf6_1 688 KB bioconda
pyparsing-3.2.5 | pyhcf101f3_0 102 KB conda-forge
pysam-0.23.3 | py312h97124e9_1 4.1 MB bioconda
python-3.12.11 |hc22306f_0_cpython 12.4 MB conda-forge
python-dateutil-2.9.0.post0| pyhe01879c_2 228 KB conda-forge
python-tzdata-2025.2 | pyhd8ed1ab_0 141 KB conda-forge
python_abi-3.12 | 8_cp312 7 KB conda-forge
pytz-2025.2 | pyhd8ed1ab_0 185 KB conda-forge
pyvcf3-1.0.4 | py312h7874b93_0 1.1 MB bioconda
pyyaml-6.0.3 | py312h5748b74_0 186 KB conda-forge
qhull-2020.2 | h420ef59_5 504 KB conda-forge
re2-2025.11.05 | h64b956e_0 27 KB conda-forge
readline-8.2 | h1d1bf99_2 246 KB conda-forge
referencing-0.37.0 | pyhcf101f3_0 51 KB conda-forge
requests-2.32.5 | pyhd8ed1ab_0 58 KB conda-forge
rpds-py-0.29.0 | py312h6ef9ec0_0 352 KB conda-forge
samtools-1.22.1 | h267f7b9_0 476 KB bioconda
scikit-learn-1.7.2 | py312h79e0ffc_0 8.5 MB conda-forge
scipy-1.16.3 | py312ha6bbf71_1 13.1 MB conda-forge
setuptools-80.9.0 | pyhff2d567_0 731 KB conda-forge
simplejson-3.20.2 | py312h4409184_1 129 KB conda-forge
six-1.17.0 | pyhe01879c_1 18 KB conda-forge
snappy-1.2.2 | hada39a4_1 38 KB conda-forge
sortedcontainers-2.4.0 | pyhd8ed1ab_1 28 KB conda-forge
tblib-3.2.2 | pyhcf101f3_0 19 KB conda-forge
threadpoolctl-3.6.0 | pyhecae5ae_0 23 KB conda-forge
tk-8.6.13 | h892fb3f_3 3.0 MB conda-forge
toolz-1.1.0 | pyhd8ed1ab_1 53 KB conda-forge
tornado-6.5.2 | py312h4409184_2 832 KB conda-forge
typing_extensions-4.15.0 | pyhcf101f3_0 50 KB conda-forge
tzdata-2025b | h78e105d_0 120 KB conda-forge
unicodedata2-17.0.0 | py312h4409184_1 407 KB conda-forge
urllib3-2.5.0 | pyhd8ed1ab_0 99 KB conda-forge
xorg-libxau-1.0.12 | hc919400_1 14 KB conda-forge
xorg-libxdmcp-1.1.5 | hc919400_1 19 KB conda-forge
xyzservices-2025.10.0 | pyhd8ed1ab_0 49 KB conda-forge
yaml-0.2.5 | h925e9cb_3 81 KB conda-forge
zict-3.0.0 | pyhd8ed1ab_1 35 KB conda-forge
zipp-3.23.0 | pyhd8ed1ab_0 22 KB conda-forge
zlib-1.3.1 | h8359307_2 76 KB conda-forge
zstandard-0.25.0 | py312h37e1c23_1 382 KB conda-forge
------------------------------------------------------------
Total: 169.0 MB
The following NEW packages will be INSTALLED:
asciitree conda-forge/noarch::asciitree-0.3.3-py_2
attrs conda-forge/noarch::attrs-25.4.0-pyh71513ae_0
aws-c-auth conda-forge/osx-arm64::aws-c-auth-0.9.1-h8818502_7
aws-c-cal conda-forge/osx-arm64::aws-c-cal-0.9.10-hca30140_1
aws-c-common conda-forge/osx-arm64::aws-c-common-0.12.5-hc919400_1
aws-c-compression conda-forge/osx-arm64::aws-c-compression-0.3.1-h61d5560_8
aws-c-event-stream conda-forge/osx-arm64::aws-c-event-stream-0.5.6-h18584fc_6
aws-c-http conda-forge/osx-arm64::aws-c-http-0.10.7-hcd69b29_4
aws-c-io conda-forge/osx-arm64::aws-c-io-0.23.3-h9710c81_3
aws-c-mqtt conda-forge/osx-arm64::aws-c-mqtt-0.13.3-ha255ef3_10
aws-c-s3 conda-forge/osx-arm64::aws-c-s3-0.10.1-hd860258_2
aws-c-sdkutils conda-forge/osx-arm64::aws-c-sdkutils-0.2.4-h61d5560_3
aws-checksums conda-forge/osx-arm64::aws-checksums-0.2.7-h61d5560_4
aws-crt-cpp conda-forge/osx-arm64::aws-crt-cpp-0.35.2-h5596a46_4
aws-sdk-cpp conda-forge/osx-arm64::aws-sdk-cpp-1.11.606-h95becb6_7
azure-core-cpp conda-forge/osx-arm64::azure-core-cpp-1.16.1-h88fedcc_0
azure-identity-cpp conda-forge/osx-arm64::azure-identity-cpp-1.13.2-h853621b_1
azure-storage-blo~ conda-forge/osx-arm64::azure-storage-blobs-cpp-12.15.0-h10d327b_1
azure-storage-com~ conda-forge/osx-arm64::azure-storage-common-cpp-12.11.0-h7e4aa5d_1
azure-storage-fil~ conda-forge/osx-arm64::azure-storage-files-datalake-cpp-12.13.0-hb288d13_1
bioframe bioconda/noarch::bioframe-0.8.0-pyhdfd78af_0
biopython conda-forge/osx-arm64::biopython-1.86-py312h4409184_0
bokeh conda-forge/noarch::bokeh-3.8.1-pyhd8ed1ab_0
bowtie2 bioconda/osx-arm64::bowtie2-2.5.4-hdd4e3a4_6
brotli conda-forge/osx-arm64::brotli-1.2.0-hca488c2_0
brotli-bin conda-forge/osx-arm64::brotli-bin-1.2.0-hce9b42c_0
brotli-python conda-forge/osx-arm64::brotli-python-1.2.0-py312hcae0c51_0
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-hd037594_8
c-ares conda-forge/osx-arm64::c-ares-1.34.5-h5505292_0
ca-certificates conda-forge/noarch::ca-certificates-2025.11.12-hbd8a1cb_0
cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1
cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1
certifi conda-forge/noarch::certifi-2025.11.12-pyhd8ed1ab_0
cffi conda-forge/osx-arm64::cffi-2.0.0-py312hb65edc0_0
charset-normalizer conda-forge/noarch::charset-normalizer-3.4.4-pyhd8ed1ab_0
chromosight bioconda/noarch::chromosight-1.6.3-pyhdfd78af_0
click conda-forge/noarch::click-8.3.1-pyh707e725_0
cloudpickle conda-forge/noarch::cloudpickle-3.1.2-pyhd8ed1ab_0
contourpy conda-forge/osx-arm64::contourpy-1.3.3-py312h84eede6_3
cooler bioconda/noarch::cooler-0.10.3-pyhdfd78af_0
coreutils conda-forge/osx-arm64::coreutils-9.5-h93a5062_0
cycler conda-forge/noarch::cycler-0.12.1-pyhd8ed1ab_1
cytoolz conda-forge/osx-arm64::cytoolz-1.1.0-py312h4409184_1
dask conda-forge/noarch::dask-2025.11.0-pyhcf101f3_0
dask-core conda-forge/noarch::dask-core-2025.11.0-pyhcf101f3_0
dill conda-forge/noarch::dill-0.4.0-pyhd8ed1ab_0
distributed conda-forge/noarch::distributed-2025.11.0-pyhcf101f3_0
docopt conda-forge/noarch::docopt-0.6.2-pyhd8ed1ab_2
fonttools conda-forge/osx-arm64::fonttools-4.60.1-py312h5748b74_0
freetype conda-forge/osx-arm64::freetype-2.14.1-hce30654_0
fsspec conda-forge/noarch::fsspec-2025.10.0-pyhd8ed1ab_0
gflags conda-forge/osx-arm64::gflags-2.2.2-hf9b8971_1005
glog conda-forge/osx-arm64::glog-0.7.1-heb240a5_0
h2 conda-forge/noarch::h2-4.3.0-pyhcf101f3_0
h5py conda-forge/osx-arm64::h5py-3.15.1-nompi_py312h4eecd6b_100
hdf5 conda-forge/osx-arm64::hdf5-1.14.6-nompi_he65715a_103
hicstuff bioconda/noarch::hicstuff-3.2.4-pyhdfd78af_0
hpack conda-forge/noarch::hpack-4.1.0-pyhd8ed1ab_0
htslib bioconda/osx-arm64::htslib-1.22.1-hfcd771d_0
hyperframe conda-forge/noarch::hyperframe-6.1.0-pyhd8ed1ab_0
icu conda-forge/osx-arm64::icu-75.1-hfee45f7_0
idna conda-forge/noarch::idna-3.11-pyhd8ed1ab_0
importlib-metadata conda-forge/noarch::importlib-metadata-8.7.0-pyhe01879c_1
jinja2 conda-forge/noarch::jinja2-3.1.6-pyhd8ed1ab_0
joblib conda-forge/noarch::joblib-1.5.2-pyhd8ed1ab_0
jsonschema conda-forge/noarch::jsonschema-4.25.1-pyhe01879c_0
jsonschema-specif~ conda-forge/noarch::jsonschema-specifications-2025.9.1-pyhcf101f3_0
k8 bioconda/osx-arm64::k8-1.2-hda5e58c_6
kiwisolver conda-forge/osx-arm64::kiwisolver-1.4.9-py312hd8c8125_2
krb5 conda-forge/osx-arm64::krb5-1.21.3-h237132a_0
lcms2 conda-forge/osx-arm64::lcms2-2.17-h7eeda09_0
lerc conda-forge/osx-arm64::lerc-4.0.0-hd64df32_1
libabseil conda-forge/osx-arm64::libabseil-20250512.1-cxx17_hd41c47c_0
libaec conda-forge/osx-arm64::libaec-1.1.4-h51d1e36_0
libarrow conda-forge/osx-arm64::libarrow-22.0.0-h4a3aeba_4_cpu
libarrow-acero conda-forge/osx-arm64::libarrow-acero-22.0.0-hc317990_4_cpu
libarrow-compute conda-forge/osx-arm64::libarrow-compute-22.0.0-h75845d1_4_cpu
libarrow-dataset conda-forge/osx-arm64::libarrow-dataset-22.0.0-hc317990_4_cpu
libarrow-substrait conda-forge/osx-arm64::libarrow-substrait-22.0.0-h144af7f_4_cpu
libblas conda-forge/osx-arm64::libblas-3.11.0-0_h51639a9_openblas
libbrotlicommon conda-forge/osx-arm64::libbrotlicommon-1.2.0-h87ba0bc_0
libbrotlidec conda-forge/osx-arm64::libbrotlidec-1.2.0-h95a88de_0
libbrotlienc conda-forge/osx-arm64::libbrotlienc-1.2.0-hb1b9735_0
libcblas conda-forge/osx-arm64::libcblas-3.11.0-0_hb0561ab_openblas
libcrc32c conda-forge/osx-arm64::libcrc32c-1.1.2-hbdafb3b_0
libcurl conda-forge/osx-arm64::libcurl-8.17.0-hdece5d2_0
libcxx conda-forge/osx-arm64::libcxx-21.1.5-hf598326_0
libdeflate conda-forge/osx-arm64::libdeflate-1.22-hd74edd7_0
libedit conda-forge/osx-arm64::libedit-3.1.20250104-pl5321hafb1f1b_0
libev conda-forge/osx-arm64::libev-4.33-h93a5062_2
libevent conda-forge/osx-arm64::libevent-2.1.12-h2757513_1
libexpat conda-forge/osx-arm64::libexpat-2.7.1-hec049ff_0
libffi conda-forge/osx-arm64::libffi-3.4.6-h1da3d7d_1
libfreetype conda-forge/osx-arm64::libfreetype-2.14.1-hce30654_0
libfreetype6 conda-forge/osx-arm64::libfreetype6-2.14.1-h6da58f4_0
libgfortran conda-forge/osx-arm64::libgfortran-15.2.0-hfcf01ff_1
libgfortran5 conda-forge/osx-arm64::libgfortran5-15.2.0-h742603c_1
libgoogle-cloud conda-forge/osx-arm64::libgoogle-cloud-2.39.0-head0a95_0
libgoogle-cloud-s~ conda-forge/osx-arm64::libgoogle-cloud-storage-2.39.0-hfa3a374_0
libgrpc conda-forge/osx-arm64::libgrpc-1.73.1-h3063b79_1
libiconv conda-forge/osx-arm64::libiconv-1.18-h23cfdf5_2
libjpeg-turbo conda-forge/osx-arm64::libjpeg-turbo-3.1.2-hc919400_0
liblapack conda-forge/osx-arm64::liblapack-3.11.0-0_hd9741b5_openblas
liblzma conda-forge/osx-arm64::liblzma-5.8.1-h39f12f2_2
libnghttp2 conda-forge/osx-arm64::libnghttp2-1.67.0-hc438710_0
libopenblas conda-forge/osx-arm64::libopenblas-0.3.30-openmp_ha158390_3
libopentelemetry-~ conda-forge/osx-arm64::libopentelemetry-cpp-1.21.0-he15edb5_1
libopentelemetry-~ conda-forge/osx-arm64::libopentelemetry-cpp-headers-1.21.0-hce30654_1
libparquet conda-forge/osx-arm64::libparquet-22.0.0-h0ac143b_4_cpu
libpng conda-forge/osx-arm64::libpng-1.6.50-h280e0eb_1
libprotobuf conda-forge/osx-arm64::libprotobuf-6.31.1-h658db43_2
libre2-11 conda-forge/osx-arm64::libre2-11-2025.11.05-h91c62da_0
libsqlite conda-forge/osx-arm64::libsqlite-3.51.0-h8adb53f_0
libssh2 conda-forge/osx-arm64::libssh2-1.11.1-h1590b86_0
libthrift conda-forge/osx-arm64::libthrift-0.22.0-h14a376c_1
libtiff conda-forge/osx-arm64::libtiff-4.7.0-ha962b0a_2
libutf8proc conda-forge/osx-arm64::libutf8proc-2.11.1-hd2415e0_0
libwebp-base conda-forge/osx-arm64::libwebp-base-1.6.0-h07db88b_0
libxcb conda-forge/osx-arm64::libxcb-1.17.0-hdb1d25a_0
libxml2 conda-forge/osx-arm64::libxml2-2.15.1-h9329255_0
libxml2-16 conda-forge/osx-arm64::libxml2-16-2.15.1-h0ff4647_0
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
llvm-openmp conda-forge/osx-arm64::llvm-openmp-21.1.5-h4a912ad_2
locket conda-forge/noarch::locket-1.0.0-pyhd8ed1ab_0
lz4 conda-forge/osx-arm64::lz4-4.4.5-py312h2b25a0d_0
lz4-c conda-forge/osx-arm64::lz4-c-1.10.0-h286801f_1
markupsafe conda-forge/osx-arm64::markupsafe-3.0.3-py312h5748b74_0
matplotlib-base conda-forge/osx-arm64::matplotlib-base-3.10.8-py312h605b88b_0
minimap2 bioconda/osx-arm64::minimap2-2.30-hba9b596_0
msgpack-python conda-forge/osx-arm64::msgpack-python-1.1.2-py312h84eede6_1
multiprocess conda-forge/osx-arm64::multiprocess-0.70.18-py312h37e1c23_2
munkres conda-forge/noarch::munkres-1.1.4-pyhd8ed1ab_1
narwhals conda-forge/noarch::narwhals-2.12.0-pyhcf101f3_0
ncurses conda-forge/osx-arm64::ncurses-6.5-h5e97a16_3
nlohmann_json conda-forge/osx-arm64::nlohmann_json-3.12.0-h248ca61_1
numpy conda-forge/osx-arm64::numpy-1.26.4-py312h8442bc7_0
openjpeg conda-forge/osx-arm64::openjpeg-2.5.3-h889cd5d_1
openssl conda-forge/osx-arm64::openssl-3.6.0-h5503f6c_0
orc conda-forge/osx-arm64::orc-2.2.1-h4fd0076_0
packaging conda-forge/noarch::packaging-25.0-pyh29332c3_1
pairix bioconda/osx-arm64::pairix-0.3.9-py312h93f676b_0
pairtools bioconda/osx-arm64::pairtools-1.1.3-py312h6d1645c_0
pandas conda-forge/osx-arm64::pandas-2.3.3-py312h5978115_1
partd conda-forge/noarch::partd-1.4.2-pyhd8ed1ab_0
perl conda-forge/osx-arm64::perl-5.32.1-7_h4614cfb_perl5
pillow conda-forge/osx-arm64::pillow-11.3.0-py312h2525f64_3
pip conda-forge/noarch::pip-25.3-pyh8b19718_0
prometheus-cpp conda-forge/osx-arm64::prometheus-cpp-1.3.0-h0967b3e_0
psutil conda-forge/osx-arm64::psutil-7.1.3-py312h37e1c23_0
pthread-stubs conda-forge/osx-arm64::pthread-stubs-0.4-hd74edd7_1002
pyarrow conda-forge/osx-arm64::pyarrow-22.0.0-py312h1f38498_0
pyarrow-core conda-forge/osx-arm64::pyarrow-core-22.0.0-py312hea229ce_0_cpu
pycparser conda-forge/noarch::pycparser-2.22-pyh29332c3_1
pyfaidx bioconda/noarch::pyfaidx-0.9.0.3-pyhdfd78af_0
pyfastx bioconda/osx-arm64::pyfastx-2.2.0-py312h689eaf6_1
pyparsing conda-forge/noarch::pyparsing-3.2.5-pyhcf101f3_0
pysam bioconda/osx-arm64::pysam-0.23.3-py312h97124e9_1
pysocks conda-forge/noarch::pysocks-1.7.1-pyha55dd90_7
python conda-forge/osx-arm64::python-3.12.11-hc22306f_0_cpython
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhe01879c_2
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2025.2-pyhd8ed1ab_0
pyvcf3 bioconda/osx-arm64::pyvcf3-1.0.4-py312h7874b93_0
pyyaml conda-forge/osx-arm64::pyyaml-6.0.3-py312h5748b74_0
qhull conda-forge/osx-arm64::qhull-2020.2-h420ef59_5
re2 conda-forge/osx-arm64::re2-2025.11.05-h64b956e_0
readline conda-forge/osx-arm64::readline-8.2-h1d1bf99_2
referencing conda-forge/noarch::referencing-0.37.0-pyhcf101f3_0
requests conda-forge/noarch::requests-2.32.5-pyhd8ed1ab_0
rpds-py conda-forge/osx-arm64::rpds-py-0.29.0-py312h6ef9ec0_0
samtools bioconda/osx-arm64::samtools-1.22.1-h267f7b9_0
scikit-learn conda-forge/osx-arm64::scikit-learn-1.7.2-py312h79e0ffc_0
scipy conda-forge/osx-arm64::scipy-1.16.3-py312ha6bbf71_1
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
simplejson conda-forge/osx-arm64::simplejson-3.20.2-py312h4409184_1
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
snappy conda-forge/osx-arm64::snappy-1.2.2-hada39a4_1
sortedcontainers conda-forge/noarch::sortedcontainers-2.4.0-pyhd8ed1ab_1
tblib conda-forge/noarch::tblib-3.2.2-pyhcf101f3_0
threadpoolctl conda-forge/noarch::threadpoolctl-3.6.0-pyhecae5ae_0
tk conda-forge/osx-arm64::tk-8.6.13-h892fb3f_3
toolz conda-forge/noarch::toolz-1.1.0-pyhd8ed1ab_1
tornado conda-forge/osx-arm64::tornado-6.5.2-py312h4409184_2
typing_extensions conda-forge/noarch::typing_extensions-4.15.0-pyhcf101f3_0
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
unicodedata2 conda-forge/osx-arm64::unicodedata2-17.0.0-py312h4409184_1
urllib3 conda-forge/noarch::urllib3-2.5.0-pyhd8ed1ab_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
xorg-libxau conda-forge/osx-arm64::xorg-libxau-1.0.12-hc919400_1
xorg-libxdmcp conda-forge/osx-arm64::xorg-libxdmcp-1.1.5-hc919400_1
xyzservices conda-forge/noarch::xyzservices-2025.10.0-pyhd8ed1ab_0
yaml conda-forge/osx-arm64::yaml-0.2.5-h925e9cb_3
zict conda-forge/noarch::zict-3.0.0-pyhd8ed1ab_1
zipp conda-forge/noarch::zipp-3.23.0-pyhd8ed1ab_0
zlib conda-forge/osx-arm64::zlib-1.3.1-h8359307_2
zstandard conda-forge/osx-arm64::zstandard-0.25.0-py312h37e1c23_1
zstd conda-forge/osx-arm64::zstd-1.5.7-h6491c7d_2
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Quitting from HiCool.Rmd:70-80 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `py_module_import()`:
! ModuleNotFoundError: No module named 'hicstuff'
Run `reticulate::py_last_error()` for details.
---
Backtrace:
▆
1. └─HiCool::HiCool(...)
2. └─reticulate::import("hicstuff")
3. └─reticulate:::py_module_import(module, convert = convert)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'HiCool.Rmd' failed with diagnostics:
ModuleNotFoundError: No module named 'hicstuff'
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘HiCool.Rmd’
SUMMARY: processing the following file failed:
‘HiCool.Rmd’
Error: Vignette re-building failed.
Execution halted