Tiago Chedraoui Silva
| Snapshot Date: 2024-12-10 12:45 -0500 (Tue, 10 Dec 2024) |
| git_url: https://git.bioconductor.org/packages/TCGAWorkflow |
| git_branch: devel |
| git_last_commit: c327921 |
| git_last_commit_date: 2024-10-29 10:02:54 -0500 (Tue, 29 Oct 2024) |
| Back to Workflows build report for BioC 3.21 |
This page was generated on 2024-12-10 16:30 -0500 (Tue, 10 Dec 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4749 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4461 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" | 4411 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 29/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| TCGAWorkflow 1.31.0 (landing page) Tiago Chedraoui Silva
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | | |||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | |||||||||
|
To the developers/maintainers of the TCGAWorkflow package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: TCGAWorkflow |
| Version: 1.31.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL TCGAWorkflow |
| StartedAt: 2024-12-10 13:01:56 -0500 (Tue, 10 Dec 2024) |
| EndedAt: 2024-12-10 13:03:05 -0500 (Tue, 10 Dec 2024) |
| EllapsedTime: 69.4 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL TCGAWorkflow ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'TCGAWorkflow' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow' No methods found in package 'Biostrings' for request: 'pattern' when loading 'TFBSTools' Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow' No methods found in package 'Biostrings' for request: 'pattern' when loading 'TFBSTools' Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow' ** testing if installed package can be loaded from final location Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow' No methods found in package 'Biostrings' for request: 'pattern' when loading 'TFBSTools' Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow' ** testing if installed package keeps a record of temporary installation path * DONE (TCGAWorkflow)