Back to Workflows build report for BioC 3.21

This page was generated on 2025-04-22 16:30 -0400 (Tue, 22 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4831
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4573
lconwaymacOS 12.7.1 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 29/30HostnameOS / ArchINSTALLBUILD
TCGAWorkflow 1.32.0  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2025-04-22 12:45 -0400 (Tue, 22 Apr 2025)
git_url: https://git.bioconductor.org/packages/TCGAWorkflow
git_branch: RELEASE_3_21
git_last_commit: d3a7608
git_last_commit_date: 2025-04-15 10:29:17 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR    ERROR  
palomino7Windows Server 2022 Datacenter / x64  OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK  

BUILD results for TCGAWorkflow on nebbiolo1

To the developers/maintainers of the TCGAWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: TCGAWorkflow
Version: 1.32.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAWorkflow
StartedAt: 2025-04-22 13:09:42 -0400 (Tue, 22 Apr 2025)
EndedAt: 2025-04-22 13:09:43 -0400 (Tue, 22 Apr 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAWorkflow
###
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* checking for file ‘TCGAWorkflow/DESCRIPTION’ ... OK
* preparing ‘TCGAWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
ERROR: dependency ‘rGADEM’ is not available for package ‘TCGAWorkflow’
Perhaps try a variation of:
install.packages('rGADEM')
* removing ‘/tmp/RtmpOaFNcS/Rinst2861af3229b98/TCGAWorkflow’
      -----------------------------------
ERROR: package installation failed