Mustafa Erhan Ozer
| Snapshot Date: 2025-02-17 13:40 -0500 (Mon, 17 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-02-18 11:41 -0500 (Tue, 18 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4720 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4482 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4493 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4446 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2100/2295 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-02-18 05:48:06 -0500 (Tue, 18 Feb 2025) |
| EndedAt: 2025-02-18 05:55:44 -0500 (Tue, 18 Feb 2025) |
| EllapsedTime: 458.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck'
* using R Under development (unstable) (2025-01-21 r87610 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'SVMDO' ... ** this is package 'SVMDO' version '1.7.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 2348,4694,1798,2113,492,8604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51604,5239,7076,5501,4627,2760
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2799,3708,84693,28976,5270,3375
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100529063,79158,5629,632,89866,10062
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4851,2582,55331,51478,7052,29929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92935,10577,406982,123099,23530,80331
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3099,28234,38,801,952,58528
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 15,6389,1558,5211,593,440503
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3670,3553,407010,1588,4715,3570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5243,1329,2693,10642,6445,6999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1444,407006,344,6340,7389,81570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55037,6401,37,80201,728,3779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92609,1080,316,1843,4915,4288
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3949,5967,8604,407010,728294,4723
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255308,1361,10008,57085,11213,7355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50674,642489,665,7515,10094,389692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123263,2890,5071,26060,10643,115286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8659,84706,2787,8813,30061,3767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5241,407007,79796,4552,3569,6329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116228,1608,58528,79087,79783,487
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54205,231,3123,5967,6564,1182
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1558,3141,479,6514,345,56938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7350,875,22901,229,2244,3557
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 104909134,57215,22796,1489,3101,5369
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 788,87178,4973,2101,9526,1075
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6571,9054,3123,84706,3954,152078
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9414,64689,51422,728,7428,79587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23038,91942,2524,50943,11096,6576
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2788,5373,5286,1348,130589,83985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57128,53632,391051,137682,55278,30061
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51422,6649,1559,4023,1185,5409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6927,3074,53345,3552,84889,7424
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8854,28957,3953,64788,203,51024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 169792,2591,8862,5264,55340,83985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8945,1807,29078,3073,22820,516
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7284,5195,26088,64116,5190,56729
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1442,9479,5501,3992,1806,2876
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 551,5805,2109,285848,2169,10753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2767,4299,4125,5837,26517,27089
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3948,284958,345,340024,2643,2688
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57128,7098,627,1910,493753,8945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5551,7078,5288,406982,2235,55278
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3417,1621,9968,2328,54539,2056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 824,4851,5498,50506,4700,5329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100529063,4899,7099,104909134,361,10243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 285362,407010,2538,2799,514,355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29928,538,5925,5443,6403,4357
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7916,4720,2712,6821,3728,123263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64801,8660,101180976,10644,1027,160287
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64116,4878,6339,3645,2752,8504
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 231,9968,84705,219,7351,116519
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5444,2194,7942,51081,27089,119559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3570,2055,5139,3988,2639,1149
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4724,6329,729230,1889,1339,6517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1571,84705,5105,5331,3240,8431
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50507,9056,55024,55858,10537,1582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64241,3643,8517,57511,3598,57128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3930,846,51458,7355,406934,2890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6925,132,11255,56652,132001,255308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10128,5105,23410,7035,3645,10642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6263,10094,56919,1376,80224,203068
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2244,4846,54982,7295,5293,407024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4878,4318,200186,28951,9180,2119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7498,10686,617,51649,6772,3485
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2119,7407,34,8504,7289,2710
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 133,84317,154,563,3980,1394
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3077,84572,8743,4313,2693,959
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6770,26003,1769,5972,147007,1559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54806,1812,7036,55486,5443,57128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6521,23389,60386,137682,7287,150379
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 819,5962,4864,3507,6383,3417
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1268,3685,708,210,2034,5286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3418,23400,952,1371,4968,54806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406982,340024,83548,5498,1803,7057
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51611,91869,5713,4988,4126,1843
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9672,56729,37,338,411,1537
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1182,3482,83985,54704,5367,56945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10269,79783,8659,432369,2786,6868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4729,2590,6891,1909,2896,89874
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54205,3953,4232,3658,4160,3692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56302,37,6462,1585,348,3295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5346,3155,518,5054,4758,123283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1786,28234,9672,407006,4233,640
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23129,3553,572,6356,57128,64919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29928,5837,959,5176,6927,22901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3101,652,2495,1442,5825,574447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1175,116228,790955,51206,51119,351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6183,79585,1636,23417,4855,7355
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 476,3065,9868,51548,4694,3992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9414,4023,4726,128486,7099,5261
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10466,169026,1499,2632,8675,54344
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9630,8803,2266,728294,55486,6609
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8942,7252,4704,4702,4548,581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1789,6934,4286,11136,6505,596
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80331,57104,9451,4149,1373,9919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149775,52,2937,266,5052,125170
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81034,50943,5195,8803,11095,23590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4697,5740,486,285848,10642,1185
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2932,345,48,23753,563,148738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1890,23409,4758,10135,3565,388743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9420,1508,148979,10643,2944,2908
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84889,10316,3710,1340,10019,43
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4299,54576,121268,356,5230,4314
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6584,656,54205,7385,3643,8694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116931,1208,29078,1890,3034,79587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5499,51119,53905,3931,123263,406922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3356,2787,1807,2990,5009,50506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5476,2946,2152,4851,123283,3081
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1186,1588,1716,11231,6564,4338
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3954,836,54658,57678,1585,29928
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3692,10020,2146,1056,1646,5442
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6890,5192,1593,563,2792,6932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5330,793,840,126328,5211,2110
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9445,6387,1807,114548,22933,2305
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 89874,150,3358,3375,5970,54476
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
183.29 3.15 186.50
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.70 | 0.10 | 1.64 | |