Mustafa Erhan Ozer
| Snapshot Date: 2025-08-14 13:40 -0400 (Thu, 14 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_21 |
| git_last_commit: 8259124 |
| git_last_commit_date: 2025-04-15 13:15:07 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-08-18 11:42 -0400 (Mon, 18 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4824 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4566 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4604 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4545 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2139/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.8.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | NA | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.8.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.8.0.tar.gz |
| StartedAt: 2025-08-15 07:38:18 -0400 (Fri, 15 Aug 2025) |
| EndedAt: 2025-08-15 07:44:39 -0400 (Fri, 15 Aug 2025) |
| EllapsedTime: 380.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings SVMDO_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck'
* using R version 4.5.1 (2025-06-13 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.8.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library' * installing *source* package 'SVMDO' ... ** this is package 'SVMDO' version '1.8.0' ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.5.1 (2025-06-13 ucrt) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 356,54106,3685,1355,51094,5207
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51092,4925,2597,3483,476,7381
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4988,4137,23590,53345,2937,7225
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 768239,3624,5473,407009,5274,2653
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84706,11035,10135,1889,407004,4035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 43,1075,10935,5096,4855,4967
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1594,1558,51181,8202,2593,64601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 486,3684,1968,5660,1806,5601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2697,2006,155,2572,1244,27249
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5241,4803,55486,1200,210,8660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3670,6554,5601,6439,4285,4982
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 118,23291,51660,3663,3980,83693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4319,53346,105372280,846,10935,4627
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4694,7412,126328,153642,2628,1586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5967,3685,54704,4609,23395,27125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 825,4702,10250,55750,1356,210
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406947,9572,91574,1230,8854,3122
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 486,169792,8639,5971,4159,3558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 858,27235,3624,26354,4976,65985
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3570,4149,3242,8642,64801,113235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1186,1769,9180,3636,1394,84902
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1588,55503,84833,285362,8803,9868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5580,57678,6383,5744,8942,5442
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8604,23395,8714,55699,65985,3481
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9091,1056,9382,3458,4609,26503
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1339,56999,3158,64788,7450,11132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5970,5442,2034,2673,2184,335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 284184,338821,131669,2118,6786,1889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9607,10524,335,11231,56623,28951
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 376497,1605,7054,486,6550,389692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 325,6389,3570,89866,9451,2695
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9479,27089,57048,2693,8942,57128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79053,5214,6391,175,958,30061
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51176,486,4716,3383,3980,3425
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64131,79644,10062,56945,1906,4543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84275,207,1605,5473,875,3283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 539,27232,2099,5365,4780,2798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 52,50506,1543,83439,2776,22845
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2184,9663,55340,283120,6888,5406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1029,26088,2119,51144,10250,121268
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2944,7274,3062,219,10135,4233
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25821,100303755,60528,6928,3087,118
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23753,5740,3949,7409,10466,27125
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9498,9526,132158,55532,2161,7319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3460,80207,284184,5442,4160,2348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3479,54578,8567,57511,594,4886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4023,6811,1268,2678,56052,387082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3558,1471,1027,79144,1361,7409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 471,2052,3357,57017,2581,308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2778,847,3663,10845,5467,340024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 819,1717,107075310,583,4780,54802
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6324,84061,5584,836,8462,9479
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81034,2334,51,2806,1345,3658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6324,4715,51176,64788,79587,3700
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,1442,2689,1080,4713,255738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1436,5798,1968,768239,2147,10991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56052,2266,149461,2581,6748,10616
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79587,516,83985,2695,3988,632
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10577,8803,1601,4864,54552,388
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84705,8202,7480,85476,23417,148979
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11232,5161,51316,29929,2688,169026
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3651,5551,25915,929,5367,1493
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84334,6198,5473,9104,2653,3082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5329,10382,2303,3091,5277,3309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7428,9526,3483,2642,5054,6564
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80270,50814,3990,8431,4719,2335
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2303,64241,2146,1075,8803,27247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4684,2713,6536,3570,3170,30061
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84274,383,7274,427,617,107075310
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407008,10577,8651,51092,3290,590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80207,6554,7389,10243,3990,3312
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23395,2180,1355,1601,5092,85569
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5798,2587,26119,4988,3382,1491
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1203,4668,9415,27089,169026,3065
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51024,387082,79133,1584,25821,4887
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7289,7919,5052,253559,54806,401
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1644,5498,3383,7372,10580,4715
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100131801,5191,4049,27344,6351,2642
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10644,2495,3703,9969,7276,1559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5507,486,84705,5350,140803,5365
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2683,24147,80347,6347,5331,9997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7026,596,5009,3291,5950,582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 585,5346,84342,29968,2303,126328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6929,5236,51099,64241,9380,7381
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 516,1442,79783,5019,574447,4713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4842,551,84649,6383,3954,4089
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4233,116931,5590,5277,205327,4338
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64087,53335,383,640,217,57570
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3480,2998,796,2697,2793,80267
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64788,54915,26235,4704,19,265
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 847,387082,2314,55037,7466,10891
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3425,708,6492,1728,80347,339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4726,9575,10008,10382,2937,51052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388585,3692,2689,3158,137682,2590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5264,130589,53632,361,3091,8818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11136,55037,116931,43,1968,5741
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5660,4967,1672,57620,29960,19
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9507,858,57107,3329,2992,11093
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3945,1786,941,2745,2629,1490
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 116931,2947,84557,825,150379,91574
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3627,6938,434,54549,7407,6401
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 132158,54968,1737,401,3598,51204
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10891,5095,5207,2203,8772,1559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 492,100303755,406913,2984,1956,55024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4683,2784,54205,64801,156,5618
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7056,55037,54578,5193,51441,1645
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2642,8567,1621,130589,51608,84649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5442,25821,2064,51099,6389,2696
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6340,80331,2948,5594,55163,56945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3373,3486,54344,10559,2717,8942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6770,3170,23369,5126,6748,581
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10165,80207,3791,23530,1374,358
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7355,63931,85446,8471,38,114548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 694,26119,92609,84902,51119,79001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7320,84342,10874,5713,401,5468
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
77.25 2.15 80.81
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.62 | 0.08 | 1.70 | |