Mustafa Erhan Ozer
| Snapshot Date: 2025-02-19 13:40 -0500 (Wed, 19 Feb 2025) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 5dea70d |
| git_last_commit_date: 2024-10-29 11:20:46 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-02-20 11:40 -0500 (Thu, 20 Feb 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4730 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4491 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4503 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4457 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2106/2302 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.7.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.7.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SVMDO_1.7.0.tar.gz |
| StartedAt: 2025-02-20 03:03:19 -0500 (Thu, 20 Feb 2025) |
| EndedAt: 2025-02-20 03:09:06 -0500 (Thu, 20 Feb 2025) |
| EllapsedTime: 346.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SVMDO_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** this is package ‘SVMDO’ version ‘1.7.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 4688,54576,6720,471,92935,2559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2904,64131,89866,488,51119,4842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7355,51458,53905,3358,85365,1537
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4846,7100,51608,1734,6505,181
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5563,3290,3710,79783,2539,57048
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5830,9759,1593,256471,3712,3728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8675,170302,652,10457,57678,5476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29960,4860,5562,5551,11132,1585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6514,948,4878,492,6934,549
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3034,6584,9104,7840,513,3425
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3569,407006,10157,28957,6890,51738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 83439,2200,5009,5499,5256,4128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100529063,3290,51082,23395,285,4656
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1586,55331,7038,6464,9451,5467
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5447,55034,22868,409,3939,7515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2334,387,7355,5562,145264,79587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 728,4143,200186,1621,8799,80201
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 203859,284958,6387,2591,132,7052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3074,64689,8722,2919,3339,10000
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253943,100130015,1442,1376,55970,7295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9451,3507,203,1244,8877,9692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 445,4609,387787,291,3938,158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1644,26191,4852,26175,406937,632
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7355,488,6182,54675,3600,6445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6925,407004,129787,7037,1182,9779
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1442,8651,9927,948,6403,506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54576,2063,54806,185,3938,6352
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 85569,3156,6789,2146,1645,10644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56945,291,7040,2034,7038,708
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 655,509,1595,356,5787,2787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6891,3304,9630,147007,3779,5828
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4864,55331,5445,132158,539,6531
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8675,210,3034,6609,199,51079
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5126,7450,5091,22901,391051,10295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 846,152926,119559,5167,3708,1028
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9131,6199,406982,3767,5330,55750
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2271,665,285,5654,253559,10730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6548,3156,3032,51004,6576,338821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23389,7036,875,5629,10559,4306
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2590,5506,2280,90480,79602,6571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3485,54798,339,114814,9409,664
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9414,7515,5080,6390,1798,388962
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1499,5584,1376,3600,160428,90480
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 196385,5195,4319,24147,8471,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 114814,3117,51128,7480,7424,4233
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2597,4705,9414,1910,488,2166
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53345,55283,407009,9056,11093,60
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 90865,389692,3032,3066,4552,1348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7350,91942,7037,4704,9927,2937
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54902,104909134,4842,5256,8660,1337
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4718,54896,161247,129787,1443,5465
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10352,2064,9512,1149,7132,493753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23395,1442,7157,4149,283120,5243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 629,10875,345,84062,6927,10559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6938,361,5052,2310,2693,2745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9560,6602,339,5126,64432,3098
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79068,407004,122961,255231,208,152926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10019,8504,7295,1843,1277,5370
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5019,2908,3481,558,6602,1544
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2903,79602,51649,2904,4843,5160
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57818,3062,8567,5740,1499,32
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 374291,5826,8195,537,201305,5068
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3670,1606,8195,84987,7528,55503
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4118,4338,859,6897,2628,4668
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10753,6770,514,6261,23543,63892
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79053,2152,27125,2194,779,330
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54675,9559,3624,6927,57215,821
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3087,26175,6569,3717,50506,79736
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2677,60386,268,2740,55065,2791
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7220,10226,3559,9971,7124,2949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 160287,1815,84342,56919,4790,115286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4668,151306,91647,326625,3663,81033
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 185,7515,4144,2896,664,79602
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51167,239,3980,2992,2793,4713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 857,10842,79949,5243,4915,22852
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7019,9969,79736,111,3416,55034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1346,463,3784,55937,3627,10580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5588,8854,5256,2055,100529063,1716
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6721,4160,54575,2280,150,518
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9409,427,3717,2799,1557,84447
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29928,26762,54809,6901,1559,3099
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1586,291,1353,7431,9409,79783
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5315,4143,10457,594,34,2030
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53905,4716,2548,2161,4726,1234
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4724,1645,5962,50814,842,4543
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 795,344,4232,4656,64788,7048
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5730,10524,79144,2767,51081,3992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1468,197322,7840,29968,84334,2266
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92483,51660,10221,5805,5078,1027
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5122,2697,10135,6462,3339,3145
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84833,112817,2314,8642,6789,1728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11255,6342,2739,2788,347411,4286
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4697,5184,6932,6341,1769,133522
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4728,538,1717,5702,51052,1585
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,4843,51422,1591,1558,54577
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5329,6183,574447,7528,27125,4705
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3784,54552,7097,7424,5288,1537
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124454,3692,2628,196385,8195,3485
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6898,1608,2934,26517,1813,229
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2159,4726,43,1644,63931,1491
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51128,558,50484,11035,7381,158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,7385,5295,6522,1843,55034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26235,5594,79644,10000,2328,51116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8471,1806,104,793,4760,7252
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3557,10020,842,3673,4118,57620
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10580,4548,3162,590,3703,55858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79661,54552,4720,10165,5538,2119
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4137,5563,384,3145,1443,100529063
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6236,2936,6248,169792,197322,11095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56729,5080,539,5465,4889,5193
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3339,1327,6932,203859,10682,291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 221458,25828,5594,2639,10560,941
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56259,654,6788,26503,5095,587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3645,25813,51611,694,339,5743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5207,26517,203,5962,10128,10295
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
114.946 3.007 118.065
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.667 | 0.107 | 3.787 | |