Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:08 -0500 (Wed, 20 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2088/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
supraHex 1.44.0 (landing page) Hai Fang
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the supraHex package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: supraHex |
Version: 1.44.0 |
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings supraHex_1.44.0.tar.gz |
StartedAt: 2024-11-20 13:03:26 -0000 (Wed, 20 Nov 2024) |
EndedAt: 2024-11-20 13:04:48 -0000 (Wed, 20 Nov 2024) |
EllapsedTime: 82.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: supraHex.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings supraHex_1.44.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/supraHex.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-unknown-linux-gnu * R was compiled by gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14) GNU Fortran (GCC) 10.3.1 * running under: openEuler 22.03 (LTS-SP1) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘supraHex/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘supraHex’ version ‘1.44.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘supraHex’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed visCompReorder 5.298 0.087 5.03 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
supraHex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL supraHex ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘supraHex’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (supraHex)
supraHex.Rcheck/supraHex-Ex.timings
name | user | system | elapsed | |
sBMH | 0.087 | 0.004 | 0.091 | |
sCompReorder | 3.630 | 0.160 | 3.797 | |
sDistance | 0.388 | 0.000 | 0.389 | |
sDmat | 0.433 | 0.044 | 0.477 | |
sDmatCluster | 0.540 | 0.008 | 0.552 | |
sDmatMinima | 0.396 | 0.012 | 0.410 | |
sHexDist | 0.009 | 0.000 | 0.009 | |
sHexGrid | 0.002 | 0.000 | 0.002 | |
sHexGridVariant | 0.002 | 0.000 | 0.002 | |
sHexPolygon | 0.108 | 0.000 | 0.108 | |
sInitial | 0.008 | 0.000 | 0.008 | |
sMapOverlay | 0.445 | 0.008 | 0.454 | |
sNeighAny | 0.011 | 0.000 | 0.011 | |
sNeighDirect | 0.010 | 0.000 | 0.009 | |
sPipeline | 0.001 | 0.000 | 0.000 | |
sTopology | 0.055 | 0.000 | 0.055 | |
sTrainBatch | 0.049 | 0.000 | 0.049 | |
sTrainSeq | 0.516 | 0.000 | 0.517 | |
sTrainology | 0.009 | 0.000 | 0.009 | |
sWriteData | 0.950 | 0.034 | 0.979 | |
visColoralpha | 0.004 | 0.000 | 0.004 | |
visColorbar | 0.026 | 0.004 | 0.030 | |
visColormap | 0.004 | 0.000 | 0.004 | |
visCompReorder | 5.298 | 0.087 | 5.030 | |
visDmatCluster | 0.000 | 0.000 | 0.001 | |
visDmatHeatmap | 0 | 0 | 0 | |
visHeatmap | 0.119 | 0.000 | 0.120 | |
visHeatmapAdv | 0.476 | 0.008 | 0.486 | |
visHexAnimate | 0.000 | 0.000 | 0.001 | |
visHexBarplot | 1.357 | 0.004 | 1.002 | |
visHexComp | 0.347 | 0.000 | 0.348 | |
visHexGrid | 0.341 | 0.000 | 0.342 | |
visHexMapping | 2.528 | 0.016 | 1.763 | |
visHexMulComp | 1.706 | 0.008 | 1.315 | |
visHexPattern | 2.225 | 0.016 | 1.883 | |
visKernels | 0.009 | 0.004 | 0.013 | |
visTreeBSclust | 0 | 0 | 0 | |
visTreeBootstrap | 0 | 0 | 0 | |
visVp | 0.021 | 0.000 | 0.022 | |