| Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-20 12:08 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2088/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| supraHex 1.44.0 (landing page) Hai Fang
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the supraHex package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: supraHex |
| Version: 1.44.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings supraHex_1.44.0.tar.gz |
| StartedAt: 2024-11-20 13:03:26 -0000 (Wed, 20 Nov 2024) |
| EndedAt: 2024-11-20 13:04:48 -0000 (Wed, 20 Nov 2024) |
| EllapsedTime: 82.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: supraHex.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings supraHex_1.44.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/supraHex.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.44.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
visCompReorder 5.298 0.087 5.03
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
supraHex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL supraHex ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘supraHex’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (supraHex)
supraHex.Rcheck/supraHex-Ex.timings
| name | user | system | elapsed | |
| sBMH | 0.087 | 0.004 | 0.091 | |
| sCompReorder | 3.630 | 0.160 | 3.797 | |
| sDistance | 0.388 | 0.000 | 0.389 | |
| sDmat | 0.433 | 0.044 | 0.477 | |
| sDmatCluster | 0.540 | 0.008 | 0.552 | |
| sDmatMinima | 0.396 | 0.012 | 0.410 | |
| sHexDist | 0.009 | 0.000 | 0.009 | |
| sHexGrid | 0.002 | 0.000 | 0.002 | |
| sHexGridVariant | 0.002 | 0.000 | 0.002 | |
| sHexPolygon | 0.108 | 0.000 | 0.108 | |
| sInitial | 0.008 | 0.000 | 0.008 | |
| sMapOverlay | 0.445 | 0.008 | 0.454 | |
| sNeighAny | 0.011 | 0.000 | 0.011 | |
| sNeighDirect | 0.010 | 0.000 | 0.009 | |
| sPipeline | 0.001 | 0.000 | 0.000 | |
| sTopology | 0.055 | 0.000 | 0.055 | |
| sTrainBatch | 0.049 | 0.000 | 0.049 | |
| sTrainSeq | 0.516 | 0.000 | 0.517 | |
| sTrainology | 0.009 | 0.000 | 0.009 | |
| sWriteData | 0.950 | 0.034 | 0.979 | |
| visColoralpha | 0.004 | 0.000 | 0.004 | |
| visColorbar | 0.026 | 0.004 | 0.030 | |
| visColormap | 0.004 | 0.000 | 0.004 | |
| visCompReorder | 5.298 | 0.087 | 5.030 | |
| visDmatCluster | 0.000 | 0.000 | 0.001 | |
| visDmatHeatmap | 0 | 0 | 0 | |
| visHeatmap | 0.119 | 0.000 | 0.120 | |
| visHeatmapAdv | 0.476 | 0.008 | 0.486 | |
| visHexAnimate | 0.000 | 0.000 | 0.001 | |
| visHexBarplot | 1.357 | 0.004 | 1.002 | |
| visHexComp | 0.347 | 0.000 | 0.348 | |
| visHexGrid | 0.341 | 0.000 | 0.342 | |
| visHexMapping | 2.528 | 0.016 | 1.763 | |
| visHexMulComp | 1.706 | 0.008 | 1.315 | |
| visHexPattern | 2.225 | 0.016 | 1.883 | |
| visKernels | 0.009 | 0.004 | 0.013 | |
| visTreeBSclust | 0 | 0 | 0 | |
| visTreeBootstrap | 0 | 0 | 0 | |
| visVp | 0.021 | 0.000 | 0.022 | |