Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2025-01-16 12:08 -0500 (Thu, 16 Jan 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4746 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4489 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4517 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4469 |
taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4387 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1434/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
nullranges 1.12.0 (landing page) Michael Love
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the nullranges package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nullranges.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: nullranges |
Version: 1.12.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:nullranges.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings nullranges_1.12.0.tar.gz |
StartedAt: 2025-01-14 06:59:39 -0500 (Tue, 14 Jan 2025) |
EndedAt: 2025-01-14 07:08:54 -0500 (Tue, 14 Jan 2025) |
EllapsedTime: 554.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: nullranges.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:nullranges.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings nullranges_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/nullranges.Rcheck’ * using R version 4.4.2 (2024-10-31) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘nullranges/DESCRIPTION’ ... OK * this is package ‘nullranges’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘nullranges’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) MatchedDataFrame.Rd:68: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedDataFrame.Rd:69: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedDataFrame.Rd:70: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedDataFrame.Rd:71: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedDataFrame.Rd:72: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedDataFrame.Rd:83: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedDataFrame.Rd:84: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedDataFrame.Rd:85: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedDataFrame.Rd:86: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGInteractions.Rd:68: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGInteractions.Rd:69: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGInteractions.Rd:70: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGInteractions.Rd:71: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGInteractions.Rd:72: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGInteractions.Rd:83: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGInteractions.Rd:84: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGInteractions.Rd:85: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGInteractions.Rd:86: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGRanges.Rd:70: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGRanges.Rd:71: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGRanges.Rd:72: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGRanges.Rd:73: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGRanges.Rd:74: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGRanges.Rd:85: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGRanges.Rd:86: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGRanges.Rd:87: Lost braces in \itemize; meant \describe ? checkRd: (-1) MatchedGRanges.Rd:88: Lost braces in \itemize; meant \describe ? checkRd: (-1) matchRanges.Rd:67-70: Lost braces in \itemize; meant \describe ? checkRd: (-1) matchRanges.Rd:71-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) matchRanges.Rd:74-77: Lost braces in \itemize; meant \describe ? checkRd: (-1) matchedClass.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) matchedClass.Rd:38: Lost braces in \itemize; meant \describe ? checkRd: (-1) matchedClass.Rd:39: Lost braces in \itemize; meant \describe ? checkRd: (-1) matchedClass.Rd:40: Lost braces in \itemize; meant \describe ? checkRd: (-1) matchedClass.Rd:41: Lost braces in \itemize; meant \describe ? checkRd: (-1) segmentDensity.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) segmentDensity.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plotCovariate 5.173 0.262 5.527 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.20-bioc/meat/nullranges.Rcheck/00check.log’ for details.
nullranges.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL nullranges ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘nullranges’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nullranges)
nullranges.Rcheck/tests/testthat.Rout
R version 4.4.2 (2024-10-31) -- "Pile of Leaves" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(nullranges) > > test_check("nullranges") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ] > > proc.time() user system elapsed 34.289 1.720 36.050
nullranges.Rcheck/nullranges-Ex.timings
name | user | system | elapsed | |
MatchedDataFrame | 4.056 | 0.153 | 3.835 | |
MatchedGInteractions | 1.393 | 0.075 | 1.294 | |
MatchedGRanges | 1.117 | 0.075 | 0.948 | |
bootRanges | 0.692 | 0.031 | 0.670 | |
combnCov | 0.007 | 0.000 | 0.007 | |
covariates | 0.313 | 0.016 | 0.240 | |
focal | 0.467 | 0.027 | 0.251 | |
indices | 0.347 | 0.020 | 0.267 | |
makeExampleMatchedDataSet | 2.106 | 0.092 | 2.177 | |
matchRanges | 2.412 | 0.162 | 3.957 | |
matched | 0.221 | 0.011 | 0.347 | |
matchedClass | 0.423 | 0.046 | 0.277 | |
matchedData | 0.213 | 0.008 | 0.221 | |
method | 0.342 | 0.035 | 0.243 | |
oneRegionSegment | 0.983 | 0.060 | 1.329 | |
overview | 0.247 | 0.020 | 0.558 | |
plotCovariate | 5.173 | 0.262 | 5.527 | |
plotPropensity | 2.828 | 0.079 | 3.235 | |
plotSegment | 3.325 | 0.153 | 3.620 | |
pool | 0.323 | 0.032 | 0.428 | |
reduceSegment | 0.481 | 0.015 | 0.494 | |
segmentDensity | 1.021 | 0.015 | 1.039 | |
unmatched | 0.376 | 0.011 | 0.308 | |
withReplacement | 0.332 | 0.018 | 0.296 | |