Multiple platform build/check report for BioC 3.20 - CHECK results for graper on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4743
palomino8	Windows Server 2022 Datacenter	x64	4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"	4486
merida1	macOS 12.7.5 Monterey	x86_64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4514
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.2 (2024-10-31) -- "Pile of Leaves"	4466
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on kjohnson1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.22.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.22.0.tar.gz

StartedAt: 2024-12-17 21:31:23 -0500 (Tue, 17 Dec 2024)

EndedAt: 2024-12-17 21:32:29 -0500 (Tue, 17 Dec 2024)

EllapsedTime: 66.5 seconds

RetCode: 0

Status: WARNINGS

CheckDir: graper.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.22.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.22.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... WARNING
Found the following significant warnings:
  /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
  #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
See ‘/Users/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fit_graper.cpp -o fit_graper.o
In file included from fit_graper.cpp:4:
In file included from ./graper_linear_dense_ff.h:2:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:15:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/special_functions/math_fwd.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
#    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
     ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-856.15
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-554.965
ELB improved by 301.184

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-490.868
ELB improved by 64.097

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.191
ELB improved by 34.6773

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.986
ELB improved by 13.2053

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.868
ELB improved by 6.11738

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.02
ELB improved by 3.84848

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.096
ELB improved by 2.92358

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.508
ELB improved by 2.58875

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.971
ELB improved by 2.53618

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.364
ELB improved by 2.60786

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.671
ELB improved by 2.69283

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417
ELB improved by 2.67109

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.558
ELB improved by 2.44138

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.551
ELB improved by 2.00687

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.06
ELB improved by 1.4911

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.025
ELB improved by 1.03575

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.319
ELB improved by 0.705886

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.827
ELB improved by 0.492145

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.468
ELB improved by 0.358913

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.193
ELB improved by 0.274938

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.973
ELB improved by 0.220028

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.79
ELB improved by 0.182495

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.634
ELB improved by 0.155718

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.499
ELB improved by 0.135874

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.378
ELB improved by 0.120674

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.269
ELB improved by 0.108699

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.17
ELB improved by 0.0990351

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.079
ELB improved by 0.0910807

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.995
ELB improved by 0.0844247

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.916
ELB improved by 0.0787802

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.842
ELB improved by 0.0739411

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.772
ELB improved by 0.069756

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.706
ELB improved by 0.0661113

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.643
ELB improved by 0.0629196

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.583
ELB improved by 0.0601129

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.525
ELB improved by 0.0576377

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.47
ELB improved by 0.0554514

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.416
ELB improved by 0.0535204

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.365
ELB improved by 0.0518179

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.314
ELB improved by 0.0503235

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.265
ELB improved by 0.0490223

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.217
ELB improved by 0.0479043

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.17
ELB improved by 0.0469645

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.124
ELB improved by 0.0462029

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.079
ELB improved by 0.0456259

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.033
ELB improved by 0.0452471

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.988
ELB improved by 0.0450904

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.943
ELB improved by 0.0451952

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.897
ELB improved by 0.045624

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.851
ELB improved by 0.0464779

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.803
ELB improved by 0.047923

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.753
ELB improved by 0.0502392

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.699
ELB improved by 0.053915

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.639
ELB improved by 0.0598377

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.569
ELB improved by 0.0696815

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.483
ELB improved by 0.0866869

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.366
ELB improved by 0.116972

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.195
ELB improved by 0.170173

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.943
ELB improved by 0.252167

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.603
ELB improved by 0.340132

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.22
ELB improved by 0.38277

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.848
ELB improved by 0.372515

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.502
ELB improved by 0.346293

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.178
ELB improved by 0.323229

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.874
ELB improved by 0.304477

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.585
ELB improved by 0.288494

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.311
ELB improved by 0.274469

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.049
ELB improved by 0.262017

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.798
ELB improved by 0.25084

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.557
ELB improved by 0.240642

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.326
ELB improved by 0.23117

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.104
ELB improved by 0.222277

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.89
ELB improved by 0.214015

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.683
ELB improved by 0.206745

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.482
ELB improved by 0.201336

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.282
ELB improved by 0.199499

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.078
ELB improved by 0.204316

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.858
ELB improved by 0.220298

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.608
ELB improved by 0.249636

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.329
ELB improved by 0.27941

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.05
ELB improved by 0.278811

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.81
ELB improved by 0.23988

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.621
ELB improved by 0.189131

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.475
ELB improved by 0.145839

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.362
ELB improved by 0.113318

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.272
ELB improved by 0.0898555

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.199
ELB improved by 0.0733325

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.137
ELB improved by 0.0620133

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.082
ELB improved by 0.0545936

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.032
ELB improved by 0.050147

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.984
ELB improved by 0.0480421

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.936
ELB improved by 0.0478301

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.887
ELB improved by 0.0490863

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.836
ELB improved by 0.0511989

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.782
ELB improved by 0.0531847

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.729
ELB improved by 0.0537568

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.677
ELB improved by 0.0518665

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.629
ELB improved by 0.0474422

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.588
ELB improved by 0.0414961

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.553
ELB improved by 0.0353499

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.523
ELB improved by 0.0298515

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.497
ELB improved by 0.025256

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.476
ELB improved by 0.0215

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.458
ELB improved by 0.0184356

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.442
ELB improved by 0.0159238

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.428
ELB improved by 0.0138519

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.416
ELB improved by 0.0121305

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.405
ELB improved by 0.0106884

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.395
ELB improved by 0.00946876

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-862.288
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-558.917
ELB improved by 303.371

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-500.614
ELB improved by 58.3028

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.796
ELB improved by 34.8182

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.495
ELB improved by 13.3006

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.566
ELB improved by 5.92938

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.255
ELB improved by 4.3104

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.371
ELB improved by 3.88427

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.611
ELB improved by 3.75993

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.877
ELB improved by 3.73417

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.16
ELB improved by 3.71678

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.521
ELB improved by 3.6395

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.077
ELB improved by 3.44381

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.985
ELB improved by 3.09151

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.375
ELB improved by 2.61018

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.249
ELB improved by 2.12622

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.506
ELB improved by 1.74285

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.077
ELB improved by 1.42852

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.93
ELB improved by 1.14768

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.002
ELB improved by 0.927824

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.236
ELB improved by 0.765491

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.619
ELB improved by 0.617243

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.149
ELB improved by 0.470393

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.794
ELB improved by 0.354485

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.517
ELB improved by 0.276993

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.293
ELB improved by 0.224139

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.107
ELB improved by 0.185923

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.95
ELB improved by 0.157676

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.813
ELB improved by 0.136485

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.693
ELB improved by 0.120105

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.586
ELB improved by 0.106943

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.49
ELB improved by 0.0959748

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.404
ELB improved by 0.0865694

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.325
ELB improved by 0.0783367

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.254
ELB improved by 0.0710297

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.19
ELB improved by 0.0644896

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.131
ELB improved by 0.0586133

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.078
ELB improved by 0.053331

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.029
ELB improved by 0.0485901

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.985
ELB improved by 0.0443443

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.944
ELB improved by 0.0405483

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.907
ELB improved by 0.0371568

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.873
ELB improved by 0.034125

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.842
ELB improved by 0.0314103

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.813
ELB improved by 0.0289739

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.786
ELB improved by 0.0267814

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.761
ELB improved by 0.0248025

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.738
ELB improved by 0.0230114

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.717
ELB improved by 0.021386

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.697
ELB improved by 0.0199073

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.678
ELB improved by 0.018559

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.661
ELB improved by 0.017327

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.645
ELB improved by 0.0161992

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.629
ELB improved by 0.015165

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.615
ELB improved by 0.014215

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.602
ELB improved by 0.013341

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.589
ELB improved by 0.012536

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.578
ELB improved by 0.0117933

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.566
ELB improved by 0.0111073

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.556
ELB improved by 0.010473

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.546
ELB improved by 0.00988568

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-866.75
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-568.262
ELB improved by 298.488

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-505.315
ELB improved by 62.947

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.868
ELB improved by 40.4466

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.188
ELB improved by 16.6805

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.428
ELB improved by 6.76021

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.211
ELB improved by 4.21704

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.869
ELB improved by 3.34172

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.797
ELB improved by 3.07169

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.704
ELB improved by 3.09292

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.427
ELB improved by 3.2774

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.859
ELB improved by 3.56748

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.972
ELB improved by 3.88716

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.883
ELB improved by 4.08909

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.909
ELB improved by 3.97358

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.488
ELB improved by 3.42164

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.92
ELB improved by 2.56806

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.182
ELB improved by 1.73734

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.043
ELB improved by 1.13941

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.269
ELB improved by 0.773685

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.712
ELB improved by 0.557538

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.29
ELB improved by 0.421687

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.962
ELB improved by 0.32847

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.701
ELB improved by 0.26114

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.489
ELB improved by 0.211642

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.314
ELB improved by 0.174741

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.168
ELB improved by 0.146611

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.043
ELB improved by 0.124605

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.936
ELB improved by 0.106983

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.843
ELB improved by 0.0926067

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.763
ELB improved by 0.0807142

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.692
ELB improved by 0.0707696

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.629
ELB improved by 0.0623811

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.574
ELB improved by 0.0552528

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.525
ELB improved by 0.0491556

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.481
ELB improved by 0.0439092

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.442
ELB improved by 0.03937

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.406
ELB improved by 0.0354228

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.374
ELB improved by 0.0319739

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.345
ELB improved by 0.0289474

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.319
ELB improved by 0.0262807

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.295
ELB improved by 0.0239222

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.273
ELB improved by 0.0218291

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.253
ELB improved by 0.0199655

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.235
ELB improved by 0.0183014

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.218
ELB improved by 0.0168112

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.203
ELB improved by 0.0154734

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.189
ELB improved by 0.0142694

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.175
ELB improved by 0.0131836

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.163
ELB improved by 0.0122021

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.152
ELB improved by 0.0113133

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.141
ELB improved by 0.0105069

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.132
ELB improved by 0.00977391

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-914.594
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-582.135
ELB improved by 332.459

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-525.522
ELB improved by 56.6126

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-492.127
ELB improved by 33.3953

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.168
ELB improved by 14.9592

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.297
ELB improved by 7.87037

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.381
ELB improved by 5.91639

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.005
ELB improved by 5.37564

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.832
ELB improved by 5.17291

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.969
ELB improved by 4.86337

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.672
ELB improved by 4.29722

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.189
ELB improved by 3.48254

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.597
ELB improved by 2.59268

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.722
ELB improved by 1.87408

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.315
ELB improved by 1.40732

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.212
ELB improved by 1.10295

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.365
ELB improved by 0.847088

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.746
ELB improved by 0.619512

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.293
ELB improved by 0.452161

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.949
ELB improved by 0.343948

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.676
ELB improved by 0.273846

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.45
ELB improved by 0.225466

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.26
ELB improved by 0.189855

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.098
ELB improved by 0.162508

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.957
ELB improved by 0.141056

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.833
ELB improved by 0.12406

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.722
ELB improved by 0.110501

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.623
ELB improved by 0.099597

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.532
ELB improved by 0.0907408

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.448
ELB improved by 0.0834699

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.371
ELB improved by 0.077436

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.299
ELB improved by 0.0723786

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.23
ELB improved by 0.0681016

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.166
ELB improved by 0.0644549

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.105
ELB improved by 0.0613223

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.046
ELB improved by 0.0586115

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.99
ELB improved by 0.0562489

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.936
ELB improved by 0.0541743

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.883
ELB improved by 0.0523382

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.833
ELB improved by 0.0506997

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.783
ELB improved by 0.0492247

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.736
ELB improved by 0.0478848

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.689
ELB improved by 0.0466564

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.643
ELB improved by 0.0455198

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.599
ELB improved by 0.0444588

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.555
ELB improved by 0.0434602

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.513
ELB improved by 0.0425137

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.471
ELB improved by 0.0416109

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.431
ELB improved by 0.0407457

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.391
ELB improved by 0.0399137

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.352
ELB improved by 0.039112

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.313
ELB improved by 0.0383392

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.276
ELB improved by 0.0375947

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.239
ELB improved by 0.0368791

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.203
ELB improved by 0.0361937

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.167
ELB improved by 0.0355406

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.132
ELB improved by 0.0349222

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.098
ELB improved by 0.0343415

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.064
ELB improved by 0.0338021

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.031
ELB improved by 0.0333077

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.998
ELB improved by 0.0328627

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.965
ELB improved by 0.0324717

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.933
ELB improved by 0.0321401

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.901
ELB improved by 0.031874

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.87
ELB improved by 0.0316804

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.838
ELB improved by 0.0315676

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.806
ELB improved by 0.0315455

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.775
ELB improved by 0.0316264

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.743
ELB improved by 0.0318254

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.711
ELB improved by 0.0321618

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.678
ELB improved by 0.0326604

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.645
ELB improved by 0.0333537

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.611
ELB improved by 0.0342852

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.575
ELB improved by 0.0355139

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.538
ELB improved by 0.0371217

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.499
ELB improved by 0.039225

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.457
ELB improved by 0.0419937

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.411
ELB improved by 0.0456825

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.36
ELB improved by 0.0506865

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.303
ELB improved by 0.0576395

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.235
ELB improved by 0.0675933

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.153
ELB improved by 0.0823285

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.048
ELB improved by 0.104794

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.909
ELB improved by 0.139183

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.72
ELB improved by 0.188331

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.476
ELB improved by 0.244822

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.19
ELB improved by 0.286079

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.891
ELB improved by 0.298736

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.594
ELB improved by 0.296373

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.3
ELB improved by 0.294095

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.006
ELB improved by 0.294602

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.711
ELB improved by 0.294694

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.421
ELB improved by 0.290369

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.142
ELB improved by 0.278819

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.882
ELB improved by 0.259637

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.647
ELB improved by 0.234853

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.44
ELB improved by 0.207707

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.258
ELB improved by 0.181275

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.101
ELB improved by 0.157739

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.962
ELB improved by 0.138258

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.839
ELB improved by 0.123133

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.727
ELB improved by 0.112049

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.623
ELB improved by 0.104261

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.524
ELB improved by 0.0986895

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.43
ELB improved by 0.0940205

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.341
ELB improved by 0.0889437

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.259
ELB improved by 0.0825851

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.184
ELB improved by 0.0748528

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.118
ELB improved by 0.0663362

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.06
ELB improved by 0.0578292

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.01
ELB improved by 0.0499234

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.967
ELB improved by 0.0429043

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.93
ELB improved by 0.0368347

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.898
ELB improved by 0.031662

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.871
ELB improved by 0.0272858

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.847
ELB improved by 0.0235914

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.827
ELB improved by 0.0204648

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.809
ELB improved by 0.0178004

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.794
ELB improved by 0.0155058

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.78
ELB improved by 0.0135049

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.768
ELB improved by 0.0117399

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.758
ELB improved by 0.010171

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.75
ELB improved by 0.00877403

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.675   0.219   2.881

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.088	0.015	0.103
getPIPs	0.082	0.012	0.095
graper	0.136	0.018	0.153
makeExampleData	0.013	0.002	0.014
makeExampleDataWithUnequalGroups	0.036	0.007	0.042
plotELBO	0.254	0.018	0.272
plotGroupPenalties	0.725	0.025	0.751
plotPosterior	0.568	0.016	0.585
predict.graper	3.043	0.069	3.113
print.graper	0.083	0.011	0.097