Pierre Khoueiry
| Snapshot Date: 2025-03-31 13:00 -0400 (Mon, 31 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/fcScan |
| git_branch: RELEASE_3_20 |
| git_last_commit: be6c200 |
| git_last_commit_date: 2024-10-29 10:39:14 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2025-04-02 19:35 -0400 (Wed, 02 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.3 (2025-02-28 ucrt) -- "Trophy Case" | 4495 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4522 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4449 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 703/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fcScan 1.20.0 (landing page) Pierre Khoueiry
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the fcScan package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: fcScan |
| Version: 1.20.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:fcScan.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings fcScan_1.20.0.tar.gz |
| StartedAt: 2025-04-01 06:28:45 -0000 (Tue, 01 Apr 2025) |
| EndedAt: 2025-04-01 06:34:06 -0000 (Tue, 01 Apr 2025) |
| EllapsedTime: 321.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: fcScan.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:fcScan.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings fcScan_1.20.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/fcScan.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘fcScan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fcScan’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fcScan’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
fcScan.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL fcScan ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.3/site-library’ * installing *source* package ‘fcScan’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fcScan)
fcScan.Rcheck/tests/runTests.Rout
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, saveRDS, setdiff, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: GenomeInfoDb
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.3068616 secs
Sites in condition do not match sites in data
3 entries loaded
Running getCluster using 1 threads
Time difference of 0.1125975 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.09203482 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1092377 secs
17 entries loaded
Running getCluster using 1 threads
No cluster found
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1398058 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1187651 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1194918 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.09658647 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1007481 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.09157944 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.09732342 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.1058364 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.08181548 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.08612084 secs
10 entries loaded
Running getCluster using 1 threads
Time difference of 0.09890676 secs
10 entries loaded
Running getCluster using 1 threads
No cluster found
10 entries loaded
Running getCluster using 1 threads
Time difference of 0.1030374 secs
16 entries loaded
Running getCluster using 1 threads
Time difference of 0.08184218 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.09045267 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.08893204 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.09361625 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.09974623 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 0.1021886 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1035416 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1217456 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1221573 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1113412 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.09266496 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.08852148 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.09482861 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1395736 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1194298 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1278076 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1433377 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.09851408 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1365058 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1122632 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.09456253 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.09424949 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.087883 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.1286013 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.09491491 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 0.130795 secs
RUNIT TEST PROTOCOL -- Tue Apr 1 06:34:03 2025
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
20.064 1.071 21.116
fcScan.Rcheck/fcScan-Ex.timings
| name | user | system | elapsed | |
| getCluster | 0.396 | 0.006 | 0.402 | |