Aaron Lun
| Snapshot Date: 2024-11-08 13:40 -0500 (Fri, 08 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/basilisk |
| git_branch: RELEASE_3_20 |
| git_last_commit: 31887d4 |
| git_last_commit_date: 2024-10-29 10:43:26 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-09 21:30 -0500 (Sat, 09 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4505 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4506 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4538 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4486 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 139/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk 1.18.0 (landing page) Aaron Lun
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: basilisk |
| Version: 1.18.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.18.0.tar.gz |
| StartedAt: 2024-11-08 20:49:07 -0500 (Fri, 08 Nov 2024) |
| EndedAt: 2024-11-08 21:00:01 -0500 (Fri, 08 Nov 2024) |
| EllapsedTime: 654.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: basilisk.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 41.348 13.834 65.306
createLocalBasiliskEnv 19.788 6.613 29.811
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00check.log’
for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘basilisk’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.47.0-hbaaea75_1
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.3.0-pyhd8ed1ab_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following packages will be downloaded:
package | build
---------------------------|-----------------
python-dateutil-2.8.2 | pyhd8ed1ab_0 240 KB conda-forge
pytz-2022.2.1 | pyhd8ed1ab_0 224 KB conda-forge
------------------------------------------------------------
Total: 464 KB
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-25_osxarm64_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-25_osxarm64_openblas
libcxx conda-forge/osx-arm64::libcxx-19.1.3-ha82da77_0
libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3
libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3
liblapack conda-forge/osx-arm64::liblapack-3.9.0-25_osxarm64_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.28-openmp_hf332438_1
llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.3-hb52a8e5_0
numpy conda-forge/osx-arm64::numpy-1.26.4-py310hd45542a_0
pandas conda-forge/osx-arm64::pandas-1.4.3-py310ha6a5cd6_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/osx-arm64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.47.0-hbaaea75_1
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.3.0-pyhd8ed1ab_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following packages will be downloaded:
package | build
---------------------------|-----------------
python-dateutil-2.8.1 | py_0 220 KB conda-forge
pytz-2022.1 | pyhd8ed1ab_0 242 KB conda-forge
------------------------------------------------------------
Total: 462 KB
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-25_osxarm64_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-25_osxarm64_openblas
libcxx conda-forge/osx-arm64::libcxx-19.1.3-ha82da77_0
libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3
libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3
liblapack conda-forge/osx-arm64::liblapack-3.9.0-25_osxarm64_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.28-openmp_hf332438_1
llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.3-hb52a8e5_0
numpy conda-forge/osx-arm64::numpy-1.26.4-py310hd45542a_0
pandas conda-forge/osx-arm64::pandas-1.4.2-py310ha6a5cd6_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/osx-arm64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.47.0-hbaaea75_1
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.3.0-pyhd8ed1ab_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting pandas==1.4.2
Using cached pandas-1.4.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (12 kB)
Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2.8.1)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2022.1)
Collecting numpy>=1.21.0 (from pandas==1.4.2)
Downloading numpy-2.1.3-cp310-cp310-macosx_11_0_arm64.whl.metadata (62 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.10/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.16.0)
Using cached pandas-1.4.2-cp310-cp310-macosx_11_0_arm64.whl (10.1 MB)
Downloading numpy-2.1.3-cp310-cp310-macosx_11_0_arm64.whl (13.7 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.7/13.7 MB 15.8 MB/s eta 0:00:00
Installing collected packages: numpy, pandas
Successfully installed numpy-2.1.3 pandas-1.4.2
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.47.0-hbaaea75_1
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.3.0-pyhd8ed1ab_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Processing /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/basilisk/example/inst/test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
Building wheel for test_dummy (setup.py): started
Building wheel for test_dummy (setup.py): finished with status 'done'
Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1280 sha256=e522e098623cc3bcbd85745e626680c3fb1d92b2e3bfc58445742346153c744a
Stored in directory: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/pip-ephem-wheel-cache-96s243m_/wheels/1a/e6/ec/7088c7d1e03deacb152b46b21d39d0f26c8526ac587cbc88a4
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.47.0-hbaaea75_1
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.3.0-pyhd8ed1ab_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
PackagesNotFoundError: The following packages are not available from current channels:
- whheeeeeeeeeeeeeeeeee=0.0.1*
Current channels:
- https://conda.anaconda.org/conda-forge
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
trying URL 'https://github.com/conda-forge/miniforge/releases/download/24.3.0-0/Miniforge3-24.3.0-0-MacOSX-arm64.sh'
Content type 'application/octet-stream' length 59957922 bytes (57.2 MB)
==================================================
downloaded 57.2 MB
PREFIX=/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpHFgilt/file24d7213d7018/1.18.0/0
Unpacking payload ...
Extracting bzip2-1.0.8-h93a5062_5.conda
Extracting c-ares-1.28.1-h93a5062_0.conda
Extracting ca-certificates-2024.2.2-hf0a4a13_0.conda
Extracting icu-73.2-hc8870d7_0.conda
Extracting libcxx-16.0.6-h4653b0c_0.conda
Extracting libev-4.33-h93a5062_2.conda
Extracting libffi-3.4.2-h3422bc3_5.tar.bz2
Extracting libiconv-1.17-h0d3ecfb_2.conda
Extracting libzlib-1.2.13-h53f4e23_5.conda
Extracting lzo-2.10-h642e427_1000.tar.bz2
Extracting ncurses-6.4.20240210-h078ce10_0.conda
Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2
Extracting python_abi-3.10-4_cp310.conda
Extracting reproc-14.2.4.post0-h93a5062_1.conda
Extracting tzdata-2024a-h0c530f3_0.conda
Extracting xz-5.2.6-h57fd34a_0.tar.bz2
Extracting fmt-10.2.1-h2ffa867_0.conda
Extracting libedit-3.1.20191231-hc8eb9b7_2.tar.bz2
Extracting libsolv-0.7.28-h1059232_2.conda
Extracting libsqlite-3.45.2-h091b4b1_0.conda
Extracting libxml2-2.12.6-h0d0cfa8_1.conda
Extracting lz4-c-1.9.4-hb7217d7_0.conda
Extracting openssl-3.2.1-h0d3ecfb_1.conda
Extracting readline-8.2-h92ec313_1.conda
Extracting reproc-cpp-14.2.4.post0-h965bd2d_1.conda
Extracting tk-8.6.13-h5083fa2_1.conda
Extracting yaml-cpp-0.8.0-h13dd4ca_0.conda
Extracting zstd-1.5.5-h4f39d0f_0.conda
Extracting krb5-1.21.2-h92f50d5_0.conda
Extracting libarchive-3.7.2-hcacb583_1.conda
Extracting libnghttp2-1.58.0-ha4dd798_1.conda
Extracting libssh2-1.11.0-h7a5bd25_0.conda
Extracting python-3.10.14-h2469fbe_0_cpython.conda
Extracting libcurl-8.7.1-h2d989ff_0.conda
Extracting menuinst-2.0.2-py310hbe9552e_0.conda
Extracting archspec-0.2.3-pyhd8ed1ab_0.conda
Extracting boltons-24.0.0-pyhd8ed1ab_0.conda
Extracting brotli-python-1.1.0-py310h1253130_1.conda
Extracting certifi-2024.2.2-pyhd8ed1ab_0.conda
Extracting charset-normalizer-3.3.2-pyhd8ed1ab_0.conda
Extracting colorama-0.4.6-pyhd8ed1ab_0.tar.bz2
Extracting distro-1.9.0-pyhd8ed1ab_0.conda
Extracting idna-3.6-pyhd8ed1ab_0.conda
Extracting jsonpointer-2.4-py310hbe9552e_3.conda
Extracting libmamba-1.5.8-h90c426b_0.conda
Extracting packaging-24.0-pyhd8ed1ab_0.conda
Extracting platformdirs-4.2.0-pyhd8ed1ab_0.conda
Extracting pluggy-1.4.0-pyhd8ed1ab_0.conda
Extracting pycosat-0.6.6-py310h2aa6e3c_0.conda
Extracting pycparser-2.22-pyhd8ed1ab_0.conda
Extracting pysocks-1.7.1-pyha2e5f31_6.tar.bz2
Extracting ruamel.yaml.clib-0.2.8-py310hd125d64_0.conda
Extracting setuptools-69.5.1-pyhd8ed1ab_0.conda
Extracting truststore-0.8.0-pyhd8ed1ab_0.conda
Extracting wheel-0.43.0-pyhd8ed1ab_1.conda
Extracting cffi-1.16.0-py310hdcd7c05_0.conda
Extracting jsonpatch-1.33-pyhd8ed1ab_0.conda
Extracting libmambapy-1.5.8-py310h5e0a2f6_0.conda
Extracting pip-24.0-pyhd8ed1ab_0.conda
Extracting ruamel.yaml-0.18.6-py310hd125d64_0.conda
Extracting tqdm-4.66.2-pyhd8ed1ab_0.conda
Extracting urllib3-2.2.1-pyhd8ed1ab_0.conda
Extracting requests-2.31.0-pyhd8ed1ab_0.conda
Extracting zstandard-0.22.0-py310h6289e41_0.conda
Extracting conda-package-streaming-0.9.0-pyhd8ed1ab_0.conda
Extracting conda-package-handling-2.2.0-pyh38be061_0.conda
Extracting conda-libmamba-solver-24.1.0-pyhd8ed1ab_0.conda
Extracting conda-24.3.0-py310hbe9552e_0.conda
Extracting mamba-1.5.8-py310ha5d4528_0.conda
Installing base environment...
Transaction
Prefix: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpHFgilt/file24d7213d7018/1.18.0/0
Updating specs:
- conda-forge/osx-arm64::bzip2==1.0.8=h93a5062_5[md5=1bbc659ca658bfd49a481b5ef7a0f40f]
- conda-forge/osx-arm64::c-ares==1.28.1=h93a5062_0[md5=04f776a6139f7eafc2f38668570eb7db]
- conda-forge/osx-arm64::ca-certificates==2024.2.2=hf0a4a13_0[md5=fb416a1795f18dcc5a038bc2dc54edf9]
- conda-forge/osx-arm64::icu==73.2=hc8870d7_0[md5=8521bd47c0e11c5902535bb1a17c565f]
- conda-forge/osx-arm64::libcxx==16.0.6=h4653b0c_0[md5=9d7d724faf0413bf1dbc5a85935700c8]
- conda-forge/osx-arm64::libev==4.33=h93a5062_2[md5=36d33e440c31857372a72137f78bacf5]
- conda-forge/osx-arm64::libffi==3.4.2=h3422bc3_5[md5=086914b672be056eb70fd4285b6783b6]
- conda-forge/osx-arm64::libiconv==1.17=h0d3ecfb_2[md5=69bda57310071cf6d2b86caf11573d2d]
- conda-forge/osx-arm64::libzlib==1.2.13=h53f4e23_5[md5=1a47f5236db2e06a320ffa0392f81bd8]
- conda-forge/osx-arm64::lzo==2.10=h642e427_1000[md5=ddab5f96f5573a9bd5e24f9994fd6ec9]
- conda-forge/osx-arm64::ncurses==6.4.20240210=h078ce10_0[md5=616ae8691e6608527d0071e6766dcb81]
- conda-forge/noarch::pybind11-abi==4=hd8ed1ab_3[md5=878f923dd6acc8aeb47a75da6c4098be]
- conda-forge/osx-arm64::python_abi==3.10=4_cp310[md5=1a3d9c6bb5f0b1b22d9e9296c127e8c7]
- conda-forge/osx-arm64::reproc==14.2.4.post0=h93a5062_1[md5=ef7ae6d7bb50c8c735551d825e1ea287]
- conda-forge/noarch::tzdata==2024a=h0c530f3_0[md5=161081fc7cec0bfda0d86d7cb595f8d8]
- conda-forge/osx-arm64::xz==5.2.6=h57fd34a_0[md5=39c6b54e94014701dd157f4f576ed211]
- conda-forge/osx-arm64::fmt==10.2.1=h2ffa867_0[md5=8cccde6755bdd787f9840f38a34b4e7d]
- conda-forge/osx-arm64::libedit==3.1.20191231=hc8eb9b7_2[md5=30e4362988a2623e9eb34337b83e01f9]
- conda-forge/osx-arm64::libsolv==0.7.28=h1059232_2[md5=00e4d252cbbeb894f15d01a1545aa876]
- conda-forge/osx-arm64::libsqlite==3.45.2=h091b4b1_0[md5=9d07427ee5bd9afd1e11ce14368a48d6]
- conda-forge/osx-arm64::libxml2==2.12.6=h0d0cfa8_1[md5=c08526c957192192e1e7b4f622761144]
- conda-forge/osx-arm64::lz4-c==1.9.4=hb7217d7_0[md5=45505bec548634f7d05e02fb25262cb9]
- conda-forge/osx-arm64::openssl==3.2.1=h0d3ecfb_1[md5=eb580fb888d93d5d550c557323ac5cee]
- conda-forge/osx-arm64::readline==8.2=h92ec313_1[md5=8cbb776a2f641b943d413b3e19df71f4]
- conda-forge/osx-arm64::reproc-cpp==14.2.4.post0=h965bd2d_1[md5=f81d00496e13ee828f84b3ef17e41346]
- conda-forge/osx-arm64::tk==8.6.13=h5083fa2_1[md5=b50a57ba89c32b62428b71a875291c9b]
- conda-forge/osx-arm64::yaml-cpp==0.8.0=h13dd4ca_0[md5=e783a232972a5c7dca549111e63a78b2]
- conda-forge/osx-arm64::zstd==1.5.5=h4f39d0f_0[md5=5b212cfb7f9d71d603ad891879dc7933]
- conda-forge/osx-arm64::krb5==1.21.2=h92f50d5_0[md5=92f1cff174a538e0722bf2efb16fc0b2]
- conda-forge/osx-arm64::libarchive==3.7.2=hcacb583_1[md5=1c8c447ce71bf5f769674b621142a73a]
- conda-forge/osx-arm64::libnghttp2==1.58.0=ha4dd798_1[md5=1813e066bfcef82de579a0be8a766df4]
- conda-forge/osx-arm64::libssh2==1.11.0=h7a5bd25_0[md5=029f7dc931a3b626b94823bc77830b01]
- conda-forge/osx-arm64::python==3.10.14=h2469fbe_0_cpython[md5=4ae999c8227c6d8c7623d32d51d25ea9]
- conda-forge/osx-arm64::libcurl==8.7.1=h2d989ff_0[md5=34b9171710f0d9bf093d55bdc36ff355]
- conda-forge/osx-arm64::menuinst==2.0.2=py310hbe9552e_0[md5=d1caf0522cd81e22c6bea4df8a2527bf]
- conda-forge/noarch::archspec==0.2.3=pyhd8ed1ab_0[md5=192278292e20704f663b9c766909d67b]
- conda-forge/noarch::boltons==24.0.0=pyhd8ed1ab_0[md5=61de176bd62041f9cd5bd4fcd09eb0ff]
- conda-forge/osx-arm64::brotli-python==1.1.0=py310h1253130_1[md5=26fab7f65a80fff9f402ec3b7860b88a]
- conda-forge/noarch::certifi==2024.2.2=pyhd8ed1ab_0[md5=0876280e409658fc6f9e75d035960333]
- conda-forge/noarch::charset-normalizer==3.3.2=pyhd8ed1ab_0[md5=7f4a9e3fcff3f6356ae99244a014da6a]
- conda-forge/noarch::colorama==0.4.6=pyhd8ed1ab_0[md5=3faab06a954c2a04039983f2c4a50d99]
- conda-forge/noarch::distro==1.9.0=pyhd8ed1ab_0[md5=bbdb409974cd6cb30071b1d978302726]
- conda-forge/noarch::idna==3.6=pyhd8ed1ab_0[md5=1a76f09108576397c41c0b0c5bd84134]
- conda-forge/osx-arm64::jsonpointer==2.4=py310hbe9552e_3[md5=7e521c322debe4fb1ac5fea63307a724]
- conda-forge/osx-arm64::libmamba==1.5.8=h90c426b_0[md5=e02e82b493ab683be580380193db1b64]
- conda-forge/noarch::packaging==24.0=pyhd8ed1ab_0[md5=248f521b64ce055e7feae3105e7abeb8]
- conda-forge/noarch::platformdirs==4.2.0=pyhd8ed1ab_0[md5=a0bc3eec34b0fab84be6b2da94e98e20]
- conda-forge/noarch::pluggy==1.4.0=pyhd8ed1ab_0[md5=139e9feb65187e916162917bb2484976]
- conda-forge/osx-arm64::pycosat==0.6.6=py310h2aa6e3c_0[md5=3a048bfd19ef0f4e1d6efd3f821c3988]
- conda-forge/noarch::pycparser==2.22=pyhd8ed1ab_0[md5=844d9eb3b43095b031874477f7d70088]
- conda-forge/noarch::pysocks==1.7.1=pyha2e5f31_6[md5=2a7de29fb590ca14b5243c4c812c8025]
- conda-forge/osx-arm64::ruamel.yaml.clib==0.2.8=py310hd125d64_0[md5=e0b9a24f19622386be17bf9f29674e81]
- conda-forge/noarch::setuptools==69.5.1=pyhd8ed1ab_0[md5=7462280d81f639363e6e63c81276bd9e]
- conda-forge/noarch::truststore==0.8.0=pyhd8ed1ab_0[md5=08316d001eca8854392cf2837828ea11]
- conda-forge/noarch::wheel==0.43.0=pyhd8ed1ab_1[md5=0b5293a157c2b5cd513dd1b03d8d3aae]
- conda-forge/osx-arm64::cffi==1.16.0=py310hdcd7c05_0[md5=8855823d908004e4d3b4fd4218795ad2]
- conda-forge/noarch::jsonpatch==1.33=pyhd8ed1ab_0[md5=bfdb7c5c6ad1077c82a69a8642c87aff]
- conda-forge/osx-arm64::libmambapy==1.5.8=py310h5e0a2f6_0[md5=fe39bd518b44380cf16dfd6b3e9a5d97]
- conda-forge/noarch::pip==24.0=pyhd8ed1ab_0[md5=f586ac1e56c8638b64f9c8122a7b8a67]
- conda-forge/osx-arm64::ruamel.yaml==0.18.6=py310hd125d64_0[md5=122d1d9bab6c74cebc0f17736a705e32]
- conda-forge/noarch::tqdm==4.66.2=pyhd8ed1ab_0[md5=2b8dfb969f984497f3f98409a9545776]
- conda-forge/noarch::urllib3==2.2.1=pyhd8ed1ab_0[md5=08807a87fa7af10754d46f63b368e016]
- conda-forge/noarch::requests==2.31.0=pyhd8ed1ab_0[md5=a30144e4156cdbb236f99ebb49828f8b]
- conda-forge/osx-arm64::zstandard==0.22.0=py310h6289e41_0[md5=f09fc5240964cceff0bbb2d68dbb6a5d]
- conda-forge/noarch::conda-package-streaming==0.9.0=pyhd8ed1ab_0[md5=38253361efb303deead3eab39ae9269b]
- conda-forge/noarch::conda-package-handling==2.2.0=pyh38be061_0[md5=8a3ae7f6318376aa08ea753367bb7dd6]
- conda-forge/noarch::conda-libmamba-solver==24.1.0=pyhd8ed1ab_0[md5=304dc78ad6e52e0fd663df1d484c1531]
- conda-forge/osx-arm64::conda==24.3.0=py310hbe9552e_0[md5=1e7bdde85ff02829bfd66bb6a9bbe5c5]
- conda-forge/osx-arm64::mamba==1.5.8=py310ha5d4528_0[md5=a92e7e545b65f49a37fe502fed013148]
Package Version Build Channel Size
─────────────────────────────────────────────────────────────────────────────────────
Install:
─────────────────────────────────────────────────────────────────────────────────────
+ bzip2 1.0.8 h93a5062_5 conda-forge
+ c-ares 1.28.1 h93a5062_0 conda-forge
+ ca-certificates 2024.2.2 hf0a4a13_0 conda-forge
+ icu 73.2 hc8870d7_0 conda-forge
+ libcxx 16.0.6 h4653b0c_0 conda-forge
+ libev 4.33 h93a5062_2 conda-forge
+ libffi 3.4.2 h3422bc3_5 conda-forge
+ libiconv 1.17 h0d3ecfb_2 conda-forge
+ libzlib 1.2.13 h53f4e23_5 conda-forge
+ lzo 2.10 h642e427_1000 conda-forge
+ ncurses 6.4.20240210 h078ce10_0 conda-forge
+ pybind11-abi 4 hd8ed1ab_3 conda-forge
+ python_abi 3.10 4_cp310 conda-forge
+ reproc 14.2.4.post0 h93a5062_1 conda-forge
+ tzdata 2024a h0c530f3_0 conda-forge
+ xz 5.2.6 h57fd34a_0 conda-forge
+ fmt 10.2.1 h2ffa867_0 conda-forge
+ libedit 3.1.20191231 hc8eb9b7_2 conda-forge
+ libsolv 0.7.28 h1059232_2 conda-forge
+ libsqlite 3.45.2 h091b4b1_0 conda-forge
+ libxml2 2.12.6 h0d0cfa8_1 conda-forge
+ lz4-c 1.9.4 hb7217d7_0 conda-forge
+ openssl 3.2.1 h0d3ecfb_1 conda-forge
+ readline 8.2 h92ec313_1 conda-forge
+ reproc-cpp 14.2.4.post0 h965bd2d_1 conda-forge
+ tk 8.6.13 h5083fa2_1 conda-forge
+ yaml-cpp 0.8.0 h13dd4ca_0 conda-forge
+ zstd 1.5.5 h4f39d0f_0 conda-forge
+ krb5 1.21.2 h92f50d5_0 conda-forge
+ libarchive 3.7.2 hcacb583_1 conda-forge
+ libnghttp2 1.58.0 ha4dd798_1 conda-forge
+ libssh2 1.11.0 h7a5bd25_0 conda-forge
+ python 3.10.14 h2469fbe_0_cpython conda-forge
+ libcurl 8.7.1 h2d989ff_0 conda-forge
+ menuinst 2.0.2 py310hbe9552e_0 conda-forge
+ archspec 0.2.3 pyhd8ed1ab_0 conda-forge
+ boltons 24.0.0 pyhd8ed1ab_0 conda-forge
+ brotli-python 1.1.0 py310h1253130_1 conda-forge
+ certifi 2024.2.2 pyhd8ed1ab_0 conda-forge
+ charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge
+ colorama 0.4.6 pyhd8ed1ab_0 conda-forge
+ distro 1.9.0 pyhd8ed1ab_0 conda-forge
+ idna 3.6 pyhd8ed1ab_0 conda-forge
+ jsonpointer 2.4 py310hbe9552e_3 conda-forge
+ libmamba 1.5.8 h90c426b_0 conda-forge
+ packaging 24.0 pyhd8ed1ab_0 conda-forge
+ platformdirs 4.2.0 pyhd8ed1ab_0 conda-forge
+ pluggy 1.4.0 pyhd8ed1ab_0 conda-forge
+ pycosat 0.6.6 py310h2aa6e3c_0 conda-forge
+ pycparser 2.22 pyhd8ed1ab_0 conda-forge
+ pysocks 1.7.1 pyha2e5f31_6 conda-forge
+ ruamel.yaml.clib 0.2.8 py310hd125d64_0 conda-forge
+ setuptools 69.5.1 pyhd8ed1ab_0 conda-forge
+ truststore 0.8.0 pyhd8ed1ab_0 conda-forge
+ wheel 0.43.0 pyhd8ed1ab_1 conda-forge
+ cffi 1.16.0 py310hdcd7c05_0 conda-forge
+ jsonpatch 1.33 pyhd8ed1ab_0 conda-forge
+ libmambapy 1.5.8 py310h5e0a2f6_0 conda-forge
+ pip 24.0 pyhd8ed1ab_0 conda-forge
+ ruamel.yaml 0.18.6 py310hd125d64_0 conda-forge
+ tqdm 4.66.2 pyhd8ed1ab_0 conda-forge
+ urllib3 2.2.1 pyhd8ed1ab_0 conda-forge
+ requests 2.31.0 pyhd8ed1ab_0 conda-forge
+ zstandard 0.22.0 py310h6289e41_0 conda-forge
+ conda-package-streaming 0.9.0 pyhd8ed1ab_0 conda-forge
+ conda-package-handling 2.2.0 pyh38be061_0 conda-forge
+ conda-libmamba-solver 24.1.0 pyhd8ed1ab_0 conda-forge
+ conda 24.3.0 py310hbe9552e_0 conda-forge
+ mamba 1.5.8 py310ha5d4528_0 conda-forge
Summary:
Install: 69 packages
Total download: 0 B
─────────────────────────────────────────────────────────────────────────────────────
Transaction starting
Linking bzip2-1.0.8-h93a5062_5
Linking c-ares-1.28.1-h93a5062_0
Linking ca-certificates-2024.2.2-hf0a4a13_0
Linking icu-73.2-hc8870d7_0
Linking libcxx-16.0.6-h4653b0c_0
Linking libev-4.33-h93a5062_2
Linking libffi-3.4.2-h3422bc3_5
Linking libiconv-1.17-h0d3ecfb_2
Linking libzlib-1.2.13-h53f4e23_5
Linking lzo-2.10-h642e427_1000
Linking ncurses-6.4.20240210-h078ce10_0
Linking pybind11-abi-4-hd8ed1ab_3
Linking python_abi-3.10-4_cp310
Linking reproc-14.2.4.post0-h93a5062_1
Linking tzdata-2024a-h0c530f3_0
Linking xz-5.2.6-h57fd34a_0
Linking fmt-10.2.1-h2ffa867_0
Linking libedit-3.1.20191231-hc8eb9b7_2
Linking libsolv-0.7.28-h1059232_2
Linking libsqlite-3.45.2-h091b4b1_0
Linking libxml2-2.12.6-h0d0cfa8_1
Linking lz4-c-1.9.4-hb7217d7_0
Linking openssl-3.2.1-h0d3ecfb_1
Linking readline-8.2-h92ec313_1
Linking reproc-cpp-14.2.4.post0-h965bd2d_1
Linking tk-8.6.13-h5083fa2_1
Linking yaml-cpp-0.8.0-h13dd4ca_0
Linking zstd-1.5.5-h4f39d0f_0
Linking krb5-1.21.2-h92f50d5_0
Linking libarchive-3.7.2-hcacb583_1
Linking libnghttp2-1.58.0-ha4dd798_1
Linking libssh2-1.11.0-h7a5bd25_0
Linking python-3.10.14-h2469fbe_0_cpython
Linking libcurl-8.7.1-h2d989ff_0
Linking menuinst-2.0.2-py310hbe9552e_0
Linking archspec-0.2.3-pyhd8ed1ab_0
Linking boltons-24.0.0-pyhd8ed1ab_0
Linking brotli-python-1.1.0-py310h1253130_1
Linking certifi-2024.2.2-pyhd8ed1ab_0
Linking charset-normalizer-3.3.2-pyhd8ed1ab_0
Linking colorama-0.4.6-pyhd8ed1ab_0
Linking distro-1.9.0-pyhd8ed1ab_0
Linking idna-3.6-pyhd8ed1ab_0
Linking jsonpointer-2.4-py310hbe9552e_3
Linking libmamba-1.5.8-h90c426b_0
Linking packaging-24.0-pyhd8ed1ab_0
Linking platformdirs-4.2.0-pyhd8ed1ab_0
Linking pluggy-1.4.0-pyhd8ed1ab_0
Linking pycosat-0.6.6-py310h2aa6e3c_0
Linking pycparser-2.22-pyhd8ed1ab_0
Linking pysocks-1.7.1-pyha2e5f31_6
Linking ruamel.yaml.clib-0.2.8-py310hd125d64_0
Linking setuptools-69.5.1-pyhd8ed1ab_0
Linking truststore-0.8.0-pyhd8ed1ab_0
Linking wheel-0.43.0-pyhd8ed1ab_1
Linking cffi-1.16.0-py310hdcd7c05_0
Linking jsonpatch-1.33-pyhd8ed1ab_0
Linking libmambapy-1.5.8-py310h5e0a2f6_0
Linking pip-24.0-pyhd8ed1ab_0
Linking ruamel.yaml-0.18.6-py310hd125d64_0
Linking tqdm-4.66.2-pyhd8ed1ab_0
Linking urllib3-2.2.1-pyhd8ed1ab_0
Linking requests-2.31.0-pyhd8ed1ab_0
Linking zstandard-0.22.0-py310h6289e41_0
Linking conda-package-streaming-0.9.0-pyhd8ed1ab_0
Linking conda-package-handling-2.2.0-pyh38be061_0
Linking conda-libmamba-solver-24.1.0-pyhd8ed1ab_0
Linking conda-24.3.0-py310hbe9552e_0
Linking mamba-1.5.8-py310ha5d4528_0
Transaction finished
To activate this environment, use:
micromamba activate /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpHFgilt/file24d7213d7018/1.18.0/0
Or to execute a single command in this environment, use:
micromamba run -p /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpHFgilt/file24d7213d7018/1.18.0/0 mycommand
installation finished.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpHFgilt/file24d7213d7018/1.18.0/basilisk.utils/1.18.0/test
added / updated specs:
- python=3.10.14
The following packages will be downloaded:
package | build
---------------------------|-----------------
bzip2-1.0.8 | h99b78c6_7 120 KB conda-forge
ca-certificates-2024.8.30 | hf0a4a13_0 155 KB conda-forge
libsqlite-3.47.0 | hbaaea75_1 818 KB conda-forge
libzlib-1.3.1 | h8359307_2 45 KB conda-forge
ncurses-6.5 | h7bae524_1 784 KB conda-forge
openssl-3.3.2 | h8359307_0 2.7 MB conda-forge
pip-24.3.1 | pyh8b19718_0 1.2 MB conda-forge
setuptools-75.3.0 | pyhd8ed1ab_0 761 KB conda-forge
tzdata-2024b | hc8b5060_0 119 KB conda-forge
wheel-0.44.0 | pyhd8ed1ab_0 57 KB conda-forge
------------------------------------------------------------
Total: 6.7 MB
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.47.0-hbaaea75_1
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.3.0-pyhd8ed1ab_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpHFgilt/file24d7213d7018/1.18.0/basilisk.utils/1.18.0/test
added / updated specs:
- pandas=1.4.3
- python=3.10.14
The following packages will be downloaded:
package | build
---------------------------|-----------------
libblas-3.9.0 |25_osxarm64_openblas 16 KB conda-forge
libcblas-3.9.0 |25_osxarm64_openblas 15 KB conda-forge
libcxx-19.1.3 | ha82da77_0 509 KB conda-forge
libgfortran-5.0.0 |13_2_0_hd922786_3 108 KB conda-forge
libgfortran5-13.2.0 | hf226fd6_3 974 KB conda-forge
liblapack-3.9.0 |25_osxarm64_openblas 15 KB conda-forge
libopenblas-0.3.28 |openmp_hf332438_1 4.0 MB conda-forge
llvm-openmp-19.1.3 | hb52a8e5_0 274 KB conda-forge
numpy-1.26.4 | py310hd45542a_0 5.2 MB conda-forge
pandas-1.4.3 | py310ha6a5cd6_0 11.7 MB conda-forge
python-dateutil-2.9.0 | pyhd8ed1ab_0 218 KB conda-forge
python_abi-3.10 | 5_cp310 6 KB conda-forge
pytz-2024.2 | pyhd8ed1ab_0 183 KB conda-forge
six-1.16.0 | pyh6c4a22f_0 14 KB conda-forge
------------------------------------------------------------
Total: 23.2 MB
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-25_osxarm64_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-25_osxarm64_openblas
libcxx conda-forge/osx-arm64::libcxx-19.1.3-ha82da77_0
libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3
libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3
liblapack conda-forge/osx-arm64::liblapack-3.9.0-25_osxarm64_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.28-openmp_hf332438_1
llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.3-hb52a8e5_0
numpy conda-forge/osx-arm64::numpy-1.26.4-py310hd45542a_0
pandas conda-forge/osx-arm64::pandas-1.4.3-py310ha6a5cd6_0
python-dateutil conda-forge/noarch::python-dateutil-2.9.0-pyhd8ed1ab_0
python_abi conda-forge/osx-arm64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.18.0
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.47.0-hbaaea75_1
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.3.0-pyhd8ed1ab_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.18.0
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-25_osxarm64_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-25_osxarm64_openblas
libcxx conda-forge/osx-arm64::libcxx-19.1.3-ha82da77_0
libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3
libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3
liblapack conda-forge/osx-arm64::liblapack-3.9.0-25_osxarm64_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.28-openmp_hf332438_1
llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.3-hb52a8e5_0
numpy conda-forge/osx-arm64::numpy-1.26.4-py310hd45542a_0
pandas conda-forge/osx-arm64::pandas-1.4.3-py310ha6a5cd6_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/osx-arm64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.47.0-hbaaea75_1
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.3.0-pyhd8ed1ab_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-25_osxarm64_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-25_osxarm64_openblas
libcxx conda-forge/osx-arm64::libcxx-19.1.3-ha82da77_0
libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3
libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3
liblapack conda-forge/osx-arm64::liblapack-3.9.0-25_osxarm64_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.28-openmp_hf332438_1
llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.3-hb52a8e5_0
numpy conda-forge/osx-arm64::numpy-1.26.4-py310hd45542a_0
pandas conda-forge/osx-arm64::pandas-1.4.3-py310ha6a5cd6_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/osx-arm64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-arm64::bzip2-1.0.8-h99b78c6_7
ca-certificates conda-forge/osx-arm64::ca-certificates-2024.8.30-hf0a4a13_0
libffi conda-forge/osx-arm64::libffi-3.4.2-h3422bc3_5
libsqlite conda-forge/osx-arm64::libsqlite-3.47.0-hbaaea75_1
libzlib conda-forge/osx-arm64::libzlib-1.3.1-h8359307_2
ncurses conda-forge/osx-arm64::ncurses-6.5-h7bae524_1
openssl conda-forge/osx-arm64::openssl-3.3.2-h8359307_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-arm64::python-3.10.14-h2469fbe_0_cpython
readline conda-forge/osx-arm64::readline-8.2-h92ec313_1
setuptools conda-forge/noarch::setuptools-75.3.0-pyhd8ed1ab_0
tk conda-forge/osx-arm64::tk-8.6.13-h5083fa2_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/osx-arm64::xz-5.2.6-h57fd34a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-arm64::libblas-3.9.0-25_osxarm64_openblas
libcblas conda-forge/osx-arm64::libcblas-3.9.0-25_osxarm64_openblas
libcxx conda-forge/osx-arm64::libcxx-19.1.3-ha82da77_0
libgfortran conda-forge/osx-arm64::libgfortran-5.0.0-13_2_0_hd922786_3
libgfortran5 conda-forge/osx-arm64::libgfortran5-13.2.0-hf226fd6_3
liblapack conda-forge/osx-arm64::liblapack-3.9.0-25_osxarm64_openblas
libopenblas conda-forge/osx-arm64::libopenblas-0.3.28-openmp_hf332438_1
llvm-openmp conda-forge/osx-arm64::llvm-openmp-19.1.3-hb52a8e5_0
numpy conda-forge/osx-arm64::numpy-1.26.4-py310hd45542a_0
pandas conda-forge/osx-arm64::pandas-1.4.2-py310ha6a5cd6_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/osx-arm64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On Mac aarch64 (1): 'test-install.R:35:5'
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ]
>
> proc.time()
user system elapsed
209.206 72.397 311.912
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.001 | 0.000 | 0.001 | |
| PyPiLink | 0 | 0 | 0 | |
| basiliskOptions | 0.000 | 0.001 | 0.000 | |
| basiliskStart | 41.348 | 13.834 | 65.306 | |
| configureBasiliskEnv | 0 | 0 | 0 | |
| createLocalBasiliskEnv | 19.788 | 6.613 | 29.811 | |
| listPackages | 0.211 | 0.061 | 0.467 | |
| obtainEnvironmentPath | 0.001 | 0.000 | 0.001 | |
| setupBasiliskEnv | 0.001 | 0.000 | 0.000 | |
| useBasiliskEnv | 0.142 | 0.060 | 0.207 | |