Aaron Lun
| Snapshot Date: 2024-11-19 13:40 -0500 (Tue, 19 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/basilisk |
| git_branch: RELEASE_3_20 |
| git_last_commit: 31887d4 |
| git_last_commit_date: 2024-10-29 10:43:26 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-11-20 12:05 -0500 (Wed, 20 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4481 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.2 (2024-10-31) -- "Pile of Leaves" | 4479 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" | 4359 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 139/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk 1.18.0 (landing page) Aaron Lun
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: basilisk |
| Version: 1.18.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.18.0.tar.gz |
| StartedAt: 2024-11-19 19:40:54 -0500 (Tue, 19 Nov 2024) |
| EndedAt: 2024-11-19 20:14:43 -0500 (Tue, 19 Nov 2024) |
| EllapsedTime: 2028.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: basilisk.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:basilisk.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings basilisk_1.18.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 156.171 27.761 216.401
createLocalBasiliskEnv 76.308 13.063 101.305
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/00check.log’
for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘basilisk’ ... ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2024.8.30-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
libsqlite conda-forge/osx-64::libsqlite-3.47.0-h2f8c449_1
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1
openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h9e318b2_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/osx-64::xz-5.2.6-h775f41a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-25_osx64_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-25_osx64_openblas
libcxx conda-forge/osx-64::libcxx-19.1.4-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
liblapack conda-forge/osx-64::liblapack-3.9.0-25_osx64_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.28-openmp_hbf64a52_1
llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.3-hf78d878_0
numpy conda-forge/osx-64::numpy-1.26.4-py310h4bfa8fc_0
pandas conda-forge/osx-64::pandas-1.4.3-py310h3099161_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/osx-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2024.8.30-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
libsqlite conda-forge/osx-64::libsqlite-3.47.0-h2f8c449_1
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1
openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h9e318b2_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/osx-64::xz-5.2.6-h775f41a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-25_osx64_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-25_osx64_openblas
libcxx conda-forge/osx-64::libcxx-19.1.4-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
liblapack conda-forge/osx-64::liblapack-3.9.0-25_osx64_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.28-openmp_hbf64a52_1
llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.3-hf78d878_0
numpy conda-forge/osx-64::numpy-1.26.4-py310h4bfa8fc_0
pandas conda-forge/osx-64::pandas-1.4.2-py310h3099161_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/osx-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=2.7
The following NEW packages will be INSTALLED:
ca-certificates conda-forge/osx-64::ca-certificates-2024.8.30-h8857fd0_0
certifi conda-forge/osx-64::certifi-2019.11.28-py27h8c360ce_1
libcxx conda-forge/osx-64::libcxx-19.1.4-hf95d169_0
libffi conda-forge/osx-64::libffi-3.2.1-hb1e8313_1007
libsqlite conda-forge/osx-64::libsqlite-3.46.0-h1b8f9f3_0
libzlib conda-forge/osx-64::libzlib-1.2.13-h87427d6_6
ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1
openssl conda-forge/osx-64::openssl-1.1.1w-h8a1eda9_0
pip conda-forge/noarch::pip-20.1.1-pyh9f0ad1d_0
python conda-forge/osx-64::python-2.7.15-h8e446fc_1011_cpython
python_abi conda-forge/osx-64::python_abi-2.7-1_cp27m
readline conda-forge/osx-64::readline-8.2-h9e318b2_1
setuptools conda-forge/osx-64::setuptools-44.0.0-py27_0
sqlite conda-forge/osx-64::sqlite-3.46.0-h28673e1_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
wheel conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
zlib conda-forge/osx-64::zlib-1.2.13-h87427d6_6
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2024.8.30-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
libsqlite conda-forge/osx-64::libsqlite-3.47.0-h2f8c449_1
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1
openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h9e318b2_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/osx-64::xz-5.2.6-h775f41a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting pandas==1.4.2
Using cached pandas-1.4.2-cp310-cp310-macosx_10_9_x86_64.whl.metadata (12 kB)
Requirement already satisfied: python-dateutil>=2.8.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2.8.1)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.10/site-packages (from pandas==1.4.2) (2022.1)
Collecting numpy>=1.21.0 (from pandas==1.4.2)
Using cached numpy-2.1.3-cp310-cp310-macosx_10_9_x86_64.whl.metadata (62 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.10/site-packages (from python-dateutil>=2.8.1->pandas==1.4.2) (1.16.0)
Using cached pandas-1.4.2-cp310-cp310-macosx_10_9_x86_64.whl (11.1 MB)
Using cached numpy-2.1.3-cp310-cp310-macosx_10_9_x86_64.whl (21.2 MB)
Installing collected packages: numpy, pandas
Successfully installed numpy-2.1.3 pandas-1.4.2
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2024.8.30-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
libsqlite conda-forge/osx-64::libsqlite-3.47.0-h2f8c449_1
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1
openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h9e318b2_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/osx-64::xz-5.2.6-h775f41a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Processing /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/basilisk/example/inst/test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
Building wheel for test_dummy (setup.py): started
Building wheel for test_dummy (setup.py): finished with status 'done'
Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1280 sha256=ba16e528ec3c17c10250e0a4bc7eaf8eac411bf4b11cd09caa4ae1f3d2248941
Stored in directory: /private/tmp/pip-ephem-wheel-cache-4gwk2phr/wheels/ed/a3/7d/ba3ef9c518a7b7615979f85274f2f8ae9c61afc957830315d4
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2024.8.30-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
libsqlite conda-forge/osx-64::libsqlite-3.47.0-h2f8c449_1
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1
openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h9e318b2_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/osx-64::xz-5.2.6-h775f41a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
PackagesNotFoundError: The following packages are not available from current channels:
- whheeeeeeeeeeeeeeeeee=0.0.1*
Current channels:
- https://conda.anaconda.org/conda-forge
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
trying URL 'https://github.com/conda-forge/miniforge/releases/download/24.3.0-0/Miniforge3-24.3.0-0-MacOSX-x86_64.sh'
Content type 'application/octet-stream' length 60881265 bytes (58.1 MB)
==================================================
downloaded 58.1 MB
PREFIX=/tmp/RtmpJ5YELU/file38ab55dc7498/1.18.0/0
Unpacking payload ...
Extracting bzip2-1.0.8-h10d778d_5.conda
Extracting c-ares-1.28.1-h10d778d_0.conda
Extracting ca-certificates-2024.2.2-h8857fd0_0.conda
Extracting icu-73.2-hf5e326d_0.conda
Extracting libcxx-16.0.6-hd57cbcb_0.conda
Extracting libev-4.33-h10d778d_2.conda
Extracting libffi-3.4.2-h0d85af4_5.tar.bz2
Extracting libiconv-1.17-hd75f5a5_2.conda
Extracting libzlib-1.2.13-h8a1eda9_5.conda
Extracting lzo-2.10-haf1e3a3_1000.tar.bz2
Extracting ncurses-6.4.20240210-h73e2aa4_0.conda
Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2
Extracting python_abi-3.10-4_cp310.conda
Extracting reproc-14.2.4.post0-h10d778d_1.conda
Extracting tzdata-2024a-h0c530f3_0.conda
Extracting xz-5.2.6-h775f41a_0.tar.bz2
Extracting fmt-10.2.1-h7728843_0.conda
Extracting libedit-3.1.20191231-h0678c8f_2.tar.bz2
Extracting libsolv-0.7.28-h2d185b6_2.conda
Extracting libsqlite-3.45.2-h92b6c6a_0.conda
Extracting libxml2-2.12.6-hc0ae0f7_1.conda
Extracting lz4-c-1.9.4-hf0c8a7f_0.conda
Extracting openssl-3.2.1-hd75f5a5_1.conda
Extracting readline-8.2-h9e318b2_1.conda
Extracting reproc-cpp-14.2.4.post0-h93d8f39_1.conda
Extracting tk-8.6.13-h1abcd95_1.conda
Extracting yaml-cpp-0.8.0-he965462_0.conda
Extracting zstd-1.5.5-h829000d_0.conda
Extracting krb5-1.21.2-hb884880_0.conda
Extracting libarchive-3.7.2-hd35d340_1.conda
Extracting libnghttp2-1.58.0-h64cf6d3_1.conda
Extracting libssh2-1.11.0-hd019ec5_0.conda
Extracting python-3.10.14-h00d2728_0_cpython.conda
Extracting libcurl-8.7.1-h726d00d_0.conda
Extracting menuinst-2.0.2-py310h2ec42d9_0.conda
Extracting archspec-0.2.3-pyhd8ed1ab_0.conda
Extracting boltons-24.0.0-pyhd8ed1ab_0.conda
Extracting brotli-python-1.1.0-py310h9e9d8ca_1.conda
Extracting certifi-2024.2.2-pyhd8ed1ab_0.conda
Extracting charset-normalizer-3.3.2-pyhd8ed1ab_0.conda
Extracting colorama-0.4.6-pyhd8ed1ab_0.tar.bz2
Extracting distro-1.9.0-pyhd8ed1ab_0.conda
Extracting idna-3.6-pyhd8ed1ab_0.conda
Extracting jsonpointer-2.4-py310h2ec42d9_3.conda
Extracting libmamba-1.5.8-ha449628_0.conda
Extracting packaging-24.0-pyhd8ed1ab_0.conda
Extracting platformdirs-4.2.0-pyhd8ed1ab_0.conda
Extracting pluggy-1.4.0-pyhd8ed1ab_0.conda
Extracting pycosat-0.6.6-py310h6729b98_0.conda
Extracting pycparser-2.22-pyhd8ed1ab_0.conda
Extracting pysocks-1.7.1-pyha2e5f31_6.tar.bz2
Extracting ruamel.yaml.clib-0.2.8-py310hb372a2b_0.conda
Extracting setuptools-69.5.1-pyhd8ed1ab_0.conda
Extracting truststore-0.8.0-pyhd8ed1ab_0.conda
Extracting wheel-0.43.0-pyhd8ed1ab_1.conda
Extracting cffi-1.16.0-py310hdca579f_0.conda
Extracting jsonpatch-1.33-pyhd8ed1ab_0.conda
Extracting libmambapy-1.5.8-py310hd168405_0.conda
Extracting pip-24.0-pyhd8ed1ab_0.conda
Extracting ruamel.yaml-0.18.6-py310hb372a2b_0.conda
Extracting tqdm-4.66.2-pyhd8ed1ab_0.conda
Extracting urllib3-2.2.1-pyhd8ed1ab_0.conda
Extracting requests-2.31.0-pyhd8ed1ab_0.conda
Extracting zstandard-0.22.0-py310hd88f66e_0.conda
Extracting conda-package-streaming-0.9.0-pyhd8ed1ab_0.conda
Extracting conda-package-handling-2.2.0-pyh38be061_0.conda
Extracting conda-libmamba-solver-24.1.0-pyhd8ed1ab_0.conda
Extracting conda-24.3.0-py310h2ec42d9_0.conda
Extracting mamba-1.5.8-py310h6bde348_0.conda
Installing base environment...
Transaction
Prefix: /private/tmp/RtmpJ5YELU/file38ab55dc7498/1.18.0/0
Updating specs:
- conda-forge/osx-64::bzip2==1.0.8=h10d778d_5[md5=6097a6ca9ada32699b5fc4312dd6ef18]
- conda-forge/osx-64::c-ares==1.28.1=h10d778d_0[md5=d5eb7992227254c0e9a0ce71151f0079]
- conda-forge/osx-64::ca-certificates==2024.2.2=h8857fd0_0[md5=f2eacee8c33c43692f1ccfd33d0f50b1]
- conda-forge/osx-64::icu==73.2=hf5e326d_0[md5=5cc301d759ec03f28328428e28f65591]
- conda-forge/osx-64::libcxx==16.0.6=hd57cbcb_0[md5=7d6972792161077908b62971802f289a]
- conda-forge/osx-64::libev==4.33=h10d778d_2[md5=899db79329439820b7e8f8de41bca902]
- conda-forge/osx-64::libffi==3.4.2=h0d85af4_5[md5=ccb34fb14960ad8b125962d3d79b31a9]
- conda-forge/osx-64::libiconv==1.17=hd75f5a5_2[md5=6c3628d047e151efba7cf08c5e54d1ca]
- conda-forge/osx-64::libzlib==1.2.13=h8a1eda9_5[md5=4a3ad23f6e16f99c04e166767193d700]
- conda-forge/osx-64::lzo==2.10=haf1e3a3_1000[md5=0b6bca372a95d6c602c7a922e928ce79]
- conda-forge/osx-64::ncurses==6.4.20240210=h73e2aa4_0[md5=50f28c512e9ad78589e3eab34833f762]
- conda-forge/noarch::pybind11-abi==4=hd8ed1ab_3[md5=878f923dd6acc8aeb47a75da6c4098be]
- conda-forge/osx-64::python_abi==3.10=4_cp310[md5=b15c816c5a86abcc4d1458dd63aa4c65]
- conda-forge/osx-64::reproc==14.2.4.post0=h10d778d_1[md5=d7c3258e871481be5bbaf28b4729e29f]
- conda-forge/noarch::tzdata==2024a=h0c530f3_0[md5=161081fc7cec0bfda0d86d7cb595f8d8]
- conda-forge/osx-64::xz==5.2.6=h775f41a_0[md5=a72f9d4ea13d55d745ff1ed594747f10]
- conda-forge/osx-64::fmt==10.2.1=h7728843_0[md5=ab205d53bda43d03f5c5b993ccb406b3]
- conda-forge/osx-64::libedit==3.1.20191231=h0678c8f_2[md5=6016a8a1d0e63cac3de2c352cd40208b]
- conda-forge/osx-64::libsolv==0.7.28=h2d185b6_2[md5=bb6893e88ce3fdd5dca9a50890cfaf63]
- conda-forge/osx-64::libsqlite==3.45.2=h92b6c6a_0[md5=086f56e13a96a6cfb1bf640505ae6b70]
- conda-forge/osx-64::libxml2==2.12.6=hc0ae0f7_1[md5=bd85e0ca9e1ffaadc3b56079fd956035]
- conda-forge/osx-64::lz4-c==1.9.4=hf0c8a7f_0[md5=aa04f7143228308662696ac24023f991]
- conda-forge/osx-64::openssl==3.2.1=hd75f5a5_1[md5=570a6f04802df580be529f3a72d2bbf7]
- conda-forge/osx-64::readline==8.2=h9e318b2_1[md5=f17f77f2acf4d344734bda76829ce14e]
- conda-forge/osx-64::reproc-cpp==14.2.4.post0=h93d8f39_1[md5=a32e95ada0ee860c91e87266700970c3]
- conda-forge/osx-64::tk==8.6.13=h1abcd95_1[md5=bf830ba5afc507c6232d4ef0fb1a882d]
- conda-forge/osx-64::yaml-cpp==0.8.0=he965462_0[md5=1bb3addc859ed1338370da6e2996ef47]
- conda-forge/osx-64::zstd==1.5.5=h829000d_0[md5=80abc41d0c48b82fe0f04e7f42f5cb7e]
- conda-forge/osx-64::krb5==1.21.2=hb884880_0[md5=80505a68783f01dc8d7308c075261b2f]
- conda-forge/osx-64::libarchive==3.7.2=hd35d340_1[md5=8c7b79b20a67287a87b39df8a8c8dcc4]
- conda-forge/osx-64::libnghttp2==1.58.0=h64cf6d3_1[md5=faecc55c2a8155d9ff1c0ff9a0fef64f]
- conda-forge/osx-64::libssh2==1.11.0=hd019ec5_0[md5=ca3a72efba692c59a90d4b9fc0dfe774]
- conda-forge/osx-64::python==3.10.14=h00d2728_0_cpython[md5=0a1cddc4382c5c171e791c70740546dd]
- conda-forge/osx-64::libcurl==8.7.1=h726d00d_0[md5=fa58e5eaa12006bc3289a71357bef167]
- conda-forge/osx-64::menuinst==2.0.2=py310h2ec42d9_0[md5=695a6f4401b25418956a90fe6301f50d]
- conda-forge/noarch::archspec==0.2.3=pyhd8ed1ab_0[md5=192278292e20704f663b9c766909d67b]
- conda-forge/noarch::boltons==24.0.0=pyhd8ed1ab_0[md5=61de176bd62041f9cd5bd4fcd09eb0ff]
- conda-forge/osx-64::brotli-python==1.1.0=py310h9e9d8ca_1[md5=2362e323293e7699cf1e621d502f86d6]
- conda-forge/noarch::certifi==2024.2.2=pyhd8ed1ab_0[md5=0876280e409658fc6f9e75d035960333]
- conda-forge/noarch::charset-normalizer==3.3.2=pyhd8ed1ab_0[md5=7f4a9e3fcff3f6356ae99244a014da6a]
- conda-forge/noarch::colorama==0.4.6=pyhd8ed1ab_0[md5=3faab06a954c2a04039983f2c4a50d99]
- conda-forge/noarch::distro==1.9.0=pyhd8ed1ab_0[md5=bbdb409974cd6cb30071b1d978302726]
- conda-forge/noarch::idna==3.6=pyhd8ed1ab_0[md5=1a76f09108576397c41c0b0c5bd84134]
- conda-forge/osx-64::jsonpointer==2.4=py310h2ec42d9_3[md5=ca02450dbc1c346a06fc454b36ddab32]
- conda-forge/osx-64::libmamba==1.5.8=ha449628_0[md5=f4eafddd38618657afefb7540d4c1a20]
- conda-forge/noarch::packaging==24.0=pyhd8ed1ab_0[md5=248f521b64ce055e7feae3105e7abeb8]
- conda-forge/noarch::platformdirs==4.2.0=pyhd8ed1ab_0[md5=a0bc3eec34b0fab84be6b2da94e98e20]
- conda-forge/noarch::pluggy==1.4.0=pyhd8ed1ab_0[md5=139e9feb65187e916162917bb2484976]
- conda-forge/osx-64::pycosat==0.6.6=py310h6729b98_0[md5=89b601f80d076bf8053eea906293353c]
- conda-forge/noarch::pycparser==2.22=pyhd8ed1ab_0[md5=844d9eb3b43095b031874477f7d70088]
- conda-forge/noarch::pysocks==1.7.1=pyha2e5f31_6[md5=2a7de29fb590ca14b5243c4c812c8025]
- conda-forge/osx-64::ruamel.yaml.clib==0.2.8=py310hb372a2b_0[md5=a6254db88b5bf45d4870c3a63dc39e8d]
- conda-forge/noarch::setuptools==69.5.1=pyhd8ed1ab_0[md5=7462280d81f639363e6e63c81276bd9e]
- conda-forge/noarch::truststore==0.8.0=pyhd8ed1ab_0[md5=08316d001eca8854392cf2837828ea11]
- conda-forge/noarch::wheel==0.43.0=pyhd8ed1ab_1[md5=0b5293a157c2b5cd513dd1b03d8d3aae]
- conda-forge/osx-64::cffi==1.16.0=py310hdca579f_0[md5=b9e6213f0eb91f40c009ce69139c1869]
- conda-forge/noarch::jsonpatch==1.33=pyhd8ed1ab_0[md5=bfdb7c5c6ad1077c82a69a8642c87aff]
- conda-forge/osx-64::libmambapy==1.5.8=py310hd168405_0[md5=d7d4c802823fdc9b95b9240ca9e62181]
- conda-forge/noarch::pip==24.0=pyhd8ed1ab_0[md5=f586ac1e56c8638b64f9c8122a7b8a67]
- conda-forge/osx-64::ruamel.yaml==0.18.6=py310hb372a2b_0[md5=a6691c80f3bf62bc0df37b87caac6a70]
- conda-forge/noarch::tqdm==4.66.2=pyhd8ed1ab_0[md5=2b8dfb969f984497f3f98409a9545776]
- conda-forge/noarch::urllib3==2.2.1=pyhd8ed1ab_0[md5=08807a87fa7af10754d46f63b368e016]
- conda-forge/noarch::requests==2.31.0=pyhd8ed1ab_0[md5=a30144e4156cdbb236f99ebb49828f8b]
- conda-forge/osx-64::zstandard==0.22.0=py310hd88f66e_0[md5=88c991558201cae2b7e690c2e9d2e618]
- conda-forge/noarch::conda-package-streaming==0.9.0=pyhd8ed1ab_0[md5=38253361efb303deead3eab39ae9269b]
- conda-forge/noarch::conda-package-handling==2.2.0=pyh38be061_0[md5=8a3ae7f6318376aa08ea753367bb7dd6]
- conda-forge/noarch::conda-libmamba-solver==24.1.0=pyhd8ed1ab_0[md5=304dc78ad6e52e0fd663df1d484c1531]
- conda-forge/osx-64::conda==24.3.0=py310h2ec42d9_0[md5=edeb7e98b7b2ff05133c584aa2c732ca]
- conda-forge/osx-64::mamba==1.5.8=py310h6bde348_0[md5=d8f96626a2a8515c9e51b90001345db6]
Package Version Build Channel Size
─────────────────────────────────────────────────────────────────────────────────────
Install:
─────────────────────────────────────────────────────────────────────────────────────
+ bzip2 1.0.8 h10d778d_5 conda-forge
+ c-ares 1.28.1 h10d778d_0 conda-forge
+ ca-certificates 2024.2.2 h8857fd0_0 conda-forge
+ icu 73.2 hf5e326d_0 conda-forge
+ libcxx 16.0.6 hd57cbcb_0 conda-forge
+ libev 4.33 h10d778d_2 conda-forge
+ libffi 3.4.2 h0d85af4_5 conda-forge
+ libiconv 1.17 hd75f5a5_2 conda-forge
+ libzlib 1.2.13 h8a1eda9_5 conda-forge
+ lzo 2.10 haf1e3a3_1000 conda-forge
+ ncurses 6.4.20240210 h73e2aa4_0 conda-forge
+ pybind11-abi 4 hd8ed1ab_3 conda-forge
+ python_abi 3.10 4_cp310 conda-forge
+ reproc 14.2.4.post0 h10d778d_1 conda-forge
+ tzdata 2024a h0c530f3_0 conda-forge
+ xz 5.2.6 h775f41a_0 conda-forge
+ fmt 10.2.1 h7728843_0 conda-forge
+ libedit 3.1.20191231 h0678c8f_2 conda-forge
+ libsolv 0.7.28 h2d185b6_2 conda-forge
+ libsqlite 3.45.2 h92b6c6a_0 conda-forge
+ libxml2 2.12.6 hc0ae0f7_1 conda-forge
+ lz4-c 1.9.4 hf0c8a7f_0 conda-forge
+ openssl 3.2.1 hd75f5a5_1 conda-forge
+ readline 8.2 h9e318b2_1 conda-forge
+ reproc-cpp 14.2.4.post0 h93d8f39_1 conda-forge
+ tk 8.6.13 h1abcd95_1 conda-forge
+ yaml-cpp 0.8.0 he965462_0 conda-forge
+ zstd 1.5.5 h829000d_0 conda-forge
+ krb5 1.21.2 hb884880_0 conda-forge
+ libarchive 3.7.2 hd35d340_1 conda-forge
+ libnghttp2 1.58.0 h64cf6d3_1 conda-forge
+ libssh2 1.11.0 hd019ec5_0 conda-forge
+ python 3.10.14 h00d2728_0_cpython conda-forge
+ libcurl 8.7.1 h726d00d_0 conda-forge
+ menuinst 2.0.2 py310h2ec42d9_0 conda-forge
+ archspec 0.2.3 pyhd8ed1ab_0 conda-forge
+ boltons 24.0.0 pyhd8ed1ab_0 conda-forge
+ brotli-python 1.1.0 py310h9e9d8ca_1 conda-forge
+ certifi 2024.2.2 pyhd8ed1ab_0 conda-forge
+ charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge
+ colorama 0.4.6 pyhd8ed1ab_0 conda-forge
+ distro 1.9.0 pyhd8ed1ab_0 conda-forge
+ idna 3.6 pyhd8ed1ab_0 conda-forge
+ jsonpointer 2.4 py310h2ec42d9_3 conda-forge
+ libmamba 1.5.8 ha449628_0 conda-forge
+ packaging 24.0 pyhd8ed1ab_0 conda-forge
+ platformdirs 4.2.0 pyhd8ed1ab_0 conda-forge
+ pluggy 1.4.0 pyhd8ed1ab_0 conda-forge
+ pycosat 0.6.6 py310h6729b98_0 conda-forge
+ pycparser 2.22 pyhd8ed1ab_0 conda-forge
+ pysocks 1.7.1 pyha2e5f31_6 conda-forge
+ ruamel.yaml.clib 0.2.8 py310hb372a2b_0 conda-forge
+ setuptools 69.5.1 pyhd8ed1ab_0 conda-forge
+ truststore 0.8.0 pyhd8ed1ab_0 conda-forge
+ wheel 0.43.0 pyhd8ed1ab_1 conda-forge
+ cffi 1.16.0 py310hdca579f_0 conda-forge
+ jsonpatch 1.33 pyhd8ed1ab_0 conda-forge
+ libmambapy 1.5.8 py310hd168405_0 conda-forge
+ pip 24.0 pyhd8ed1ab_0 conda-forge
+ ruamel.yaml 0.18.6 py310hb372a2b_0 conda-forge
+ tqdm 4.66.2 pyhd8ed1ab_0 conda-forge
+ urllib3 2.2.1 pyhd8ed1ab_0 conda-forge
+ requests 2.31.0 pyhd8ed1ab_0 conda-forge
+ zstandard 0.22.0 py310hd88f66e_0 conda-forge
+ conda-package-streaming 0.9.0 pyhd8ed1ab_0 conda-forge
+ conda-package-handling 2.2.0 pyh38be061_0 conda-forge
+ conda-libmamba-solver 24.1.0 pyhd8ed1ab_0 conda-forge
+ conda 24.3.0 py310h2ec42d9_0 conda-forge
+ mamba 1.5.8 py310h6bde348_0 conda-forge
Summary:
Install: 69 packages
Total download: 0 B
─────────────────────────────────────────────────────────────────────────────────────
Transaction starting
Linking bzip2-1.0.8-h10d778d_5
Linking c-ares-1.28.1-h10d778d_0
Linking ca-certificates-2024.2.2-h8857fd0_0
Linking icu-73.2-hf5e326d_0
Linking libcxx-16.0.6-hd57cbcb_0
Linking libev-4.33-h10d778d_2
Linking libffi-3.4.2-h0d85af4_5
Linking libiconv-1.17-hd75f5a5_2
Linking libzlib-1.2.13-h8a1eda9_5
Linking lzo-2.10-haf1e3a3_1000
Linking ncurses-6.4.20240210-h73e2aa4_0
Linking pybind11-abi-4-hd8ed1ab_3
Linking python_abi-3.10-4_cp310
Linking reproc-14.2.4.post0-h10d778d_1
Linking tzdata-2024a-h0c530f3_0
Linking xz-5.2.6-h775f41a_0
Linking fmt-10.2.1-h7728843_0
Linking libedit-3.1.20191231-h0678c8f_2
Linking libsolv-0.7.28-h2d185b6_2
Linking libsqlite-3.45.2-h92b6c6a_0
Linking libxml2-2.12.6-hc0ae0f7_1
Linking lz4-c-1.9.4-hf0c8a7f_0
Linking openssl-3.2.1-hd75f5a5_1
Linking readline-8.2-h9e318b2_1
Linking reproc-cpp-14.2.4.post0-h93d8f39_1
Linking tk-8.6.13-h1abcd95_1
Linking yaml-cpp-0.8.0-he965462_0
Linking zstd-1.5.5-h829000d_0
Linking krb5-1.21.2-hb884880_0
Linking libarchive-3.7.2-hd35d340_1
Linking libnghttp2-1.58.0-h64cf6d3_1
Linking libssh2-1.11.0-hd019ec5_0
Linking python-3.10.14-h00d2728_0_cpython
Linking libcurl-8.7.1-h726d00d_0
Linking menuinst-2.0.2-py310h2ec42d9_0
Linking archspec-0.2.3-pyhd8ed1ab_0
Linking boltons-24.0.0-pyhd8ed1ab_0
Linking brotli-python-1.1.0-py310h9e9d8ca_1
Linking certifi-2024.2.2-pyhd8ed1ab_0
Linking charset-normalizer-3.3.2-pyhd8ed1ab_0
Linking colorama-0.4.6-pyhd8ed1ab_0
Linking distro-1.9.0-pyhd8ed1ab_0
Linking idna-3.6-pyhd8ed1ab_0
Linking jsonpointer-2.4-py310h2ec42d9_3
Linking libmamba-1.5.8-ha449628_0
Linking packaging-24.0-pyhd8ed1ab_0
Linking platformdirs-4.2.0-pyhd8ed1ab_0
Linking pluggy-1.4.0-pyhd8ed1ab_0
Linking pycosat-0.6.6-py310h6729b98_0
Linking pycparser-2.22-pyhd8ed1ab_0
Linking pysocks-1.7.1-pyha2e5f31_6
Linking ruamel.yaml.clib-0.2.8-py310hb372a2b_0
Linking setuptools-69.5.1-pyhd8ed1ab_0
Linking truststore-0.8.0-pyhd8ed1ab_0
Linking wheel-0.43.0-pyhd8ed1ab_1
Linking cffi-1.16.0-py310hdca579f_0
Linking jsonpatch-1.33-pyhd8ed1ab_0
Linking libmambapy-1.5.8-py310hd168405_0
Linking pip-24.0-pyhd8ed1ab_0
Linking ruamel.yaml-0.18.6-py310hb372a2b_0
Linking tqdm-4.66.2-pyhd8ed1ab_0
Linking urllib3-2.2.1-pyhd8ed1ab_0
Linking requests-2.31.0-pyhd8ed1ab_0
Linking zstandard-0.22.0-py310hd88f66e_0
Linking conda-package-streaming-0.9.0-pyhd8ed1ab_0
Linking conda-package-handling-2.2.0-pyh38be061_0
Linking conda-libmamba-solver-24.1.0-pyhd8ed1ab_0
Linking conda-24.3.0-py310h2ec42d9_0
Linking mamba-1.5.8-py310h6bde348_0
Transaction finished
To activate this environment, use:
micromamba activate /private/tmp/RtmpJ5YELU/file38ab55dc7498/1.18.0/0
Or to execute a single command in this environment, use:
micromamba run -p /private/tmp/RtmpJ5YELU/file38ab55dc7498/1.18.0/0 mycommand
installation finished.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /private/tmp/RtmpJ5YELU/file38ab55dc7498/1.18.0/basilisk.utils/1.18.0/test
added / updated specs:
- python=3.10.14
The following packages will be downloaded:
package | build
---------------------------|-----------------
bzip2-1.0.8 | hfdf4475_7 131 KB conda-forge
ca-certificates-2024.8.30 | h8857fd0_0 155 KB conda-forge
libsqlite-3.47.0 | h2f8c449_1 894 KB conda-forge
libzlib-1.3.1 | hd23fc13_2 56 KB conda-forge
ncurses-6.5 | hf036a51_1 803 KB conda-forge
openssl-3.4.0 | hd471939_0 2.5 MB conda-forge
pip-24.3.1 | pyh8b19718_0 1.2 MB conda-forge
setuptools-75.5.0 | pyhff2d567_0 754 KB conda-forge
tzdata-2024b | hc8b5060_0 119 KB conda-forge
wheel-0.45.0 | pyhd8ed1ab_0 61 KB conda-forge
------------------------------------------------------------
Total: 6.6 MB
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2024.8.30-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
libsqlite conda-forge/osx-64::libsqlite-3.47.0-h2f8c449_1
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1
openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h9e318b2_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/osx-64::xz-5.2.6-h775f41a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /private/tmp/RtmpJ5YELU/file38ab55dc7498/1.18.0/basilisk.utils/1.18.0/test
added / updated specs:
- pandas=1.4.3
- python=3.10.14
The following packages will be downloaded:
package | build
---------------------------|-----------------
libblas-3.9.0 |25_osx64_openblas 16 KB conda-forge
libcblas-3.9.0 |25_osx64_openblas 15 KB conda-forge
libcxx-19.1.4 | hf95d169_0 517 KB conda-forge
libgfortran-5.0.0 |13_2_0_h97931a8_3 108 KB conda-forge
libgfortran5-13.2.0 | h2873a65_3 1.5 MB conda-forge
liblapack-3.9.0 |25_osx64_openblas 15 KB conda-forge
libopenblas-0.3.28 |openmp_hbf64a52_1 5.9 MB conda-forge
llvm-openmp-19.1.3 | hf78d878_0 298 KB conda-forge
numpy-1.26.4 | py310h4bfa8fc_0 6.2 MB conda-forge
pandas-1.4.3 | py310h3099161_0 12.0 MB conda-forge
python-dateutil-2.9.0.post0| pyhff2d567_0 217 KB conda-forge
python_abi-3.10 | 5_cp310 6 KB conda-forge
pytz-2024.2 | pyhd8ed1ab_0 183 KB conda-forge
six-1.16.0 | pyh6c4a22f_0 14 KB conda-forge
------------------------------------------------------------
Total: 26.9 MB
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-25_osx64_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-25_osx64_openblas
libcxx conda-forge/osx-64::libcxx-19.1.4-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
liblapack conda-forge/osx-64::liblapack-3.9.0-25_osx64_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.28-openmp_hbf64a52_1
llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.3-hf78d878_0
numpy conda-forge/osx-64::numpy-1.26.4-py310h4bfa8fc_0
pandas conda-forge/osx-64::pandas-1.4.3-py310h3099161_0
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhff2d567_0
python_abi conda-forge/osx-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2024.2-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.18.0
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2024.8.30-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
libsqlite conda-forge/osx-64::libsqlite-3.47.0-h2f8c449_1
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1
openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h9e318b2_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/osx-64::xz-5.2.6-h775f41a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.18.0
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-25_osx64_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-25_osx64_openblas
libcxx conda-forge/osx-64::libcxx-19.1.4-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
liblapack conda-forge/osx-64::liblapack-3.9.0-25_osx64_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.28-openmp_hbf64a52_1
llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.3-hf78d878_0
numpy conda-forge/osx-64::numpy-1.26.4-py310h4bfa8fc_0
pandas conda-forge/osx-64::pandas-1.4.3-py310h3099161_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/osx-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2024.8.30-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
libsqlite conda-forge/osx-64::libsqlite-3.47.0-h2f8c449_1
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1
openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h9e318b2_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/osx-64::xz-5.2.6-h775f41a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- pandas=1.4.3
- python-dateutil=2.8.2
- python=3.10.14
- pytz=2022.2.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-25_osx64_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-25_osx64_openblas
libcxx conda-forge/osx-64::libcxx-19.1.4-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
liblapack conda-forge/osx-64::liblapack-3.9.0-25_osx64_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.28-openmp_hbf64a52_1
llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.3-hf78d878_0
numpy conda-forge/osx-64::numpy-1.26.4-py310h4bfa8fc_0
pandas conda-forge/osx-64::pandas-1.4.3-py310h3099161_0
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python_abi conda-forge/osx-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.2.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
bzip2 conda-forge/osx-64::bzip2-1.0.8-hfdf4475_7
ca-certificates conda-forge/osx-64::ca-certificates-2024.8.30-h8857fd0_0
libffi conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
libsqlite conda-forge/osx-64::libsqlite-3.47.0-h2f8c449_1
libzlib conda-forge/osx-64::libzlib-1.3.1-hd23fc13_2
ncurses conda-forge/osx-64::ncurses-6.5-hf036a51_1
openssl conda-forge/osx-64::openssl-3.4.0-hd471939_0
pip conda-forge/noarch::pip-24.3.1-pyh8b19718_0
python conda-forge/osx-64::python-3.10.14-h00d2728_0_cpython
readline conda-forge/osx-64::readline-8.2-h9e318b2_1
setuptools conda-forge/noarch::setuptools-75.5.0-pyhff2d567_0
tk conda-forge/osx-64::tk-8.6.13-h1abcd95_1
tzdata conda-forge/noarch::tzdata-2024b-hc8b5060_0
wheel conda-forge/noarch::wheel-0.45.0-pyhd8ed1ab_0
xz conda-forge/osx-64::xz-5.2.6-h775f41a_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.9.2
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /Users/biocbuild/bbs-3.20-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- pandas=1.4.2
- python-dateutil=2.8.1
- python=3.10.14
- pytz=2022.1
The following NEW packages will be INSTALLED:
libblas conda-forge/osx-64::libblas-3.9.0-25_osx64_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-25_osx64_openblas
libcxx conda-forge/osx-64::libcxx-19.1.4-hf95d169_0
libgfortran conda-forge/osx-64::libgfortran-5.0.0-13_2_0_h97931a8_3
libgfortran5 conda-forge/osx-64::libgfortran5-13.2.0-h2873a65_3
liblapack conda-forge/osx-64::liblapack-3.9.0-25_osx64_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.28-openmp_hbf64a52_1
llvm-openmp conda-forge/osx-64::llvm-openmp-19.1.3-hf78d878_0
numpy conda-forge/osx-64::numpy-1.26.4-py310h4bfa8fc_0
pandas conda-forge/osx-64::pandas-1.4.2-py310h3099161_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python_abi conda-forge/osx-64::python_abi-3.10-5_cp310
pytz conda-forge/noarch::pytz-2022.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.16.0-pyh6c4a22f_0
Downloading and Extracting Packages: ...working... done
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 63 ]
>
> proc.time()
user system elapsed
868.104 202.725 1410.092
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.002 | 0.001 | 0.002 | |
| PyPiLink | 0.001 | 0.001 | 0.000 | |
| basiliskOptions | 0.000 | 0.000 | 0.001 | |
| basiliskStart | 156.171 | 27.761 | 216.401 | |
| configureBasiliskEnv | 0 | 0 | 0 | |
| createLocalBasiliskEnv | 76.308 | 13.063 | 101.305 | |
| listPackages | 0.452 | 0.183 | 0.793 | |
| obtainEnvironmentPath | 0.003 | 0.001 | 0.003 | |
| setupBasiliskEnv | 0.002 | 0.000 | 0.003 | |
| useBasiliskEnv | 0.336 | 0.159 | 0.563 | |