Back to Multiple platform build/check report for BioC 3.20:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-03-10 12:12 -0400 (Mon, 10 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.3 (2025-02-28) -- "Trophy Case" 4670
palomino8Windows Server 2022 Datacenterx644.4.3 (2025-02-28 ucrt) -- "Trophy Case" 4355
merida1macOS 12.7.5 Montereyx86_644.4.3 (2025-02-28) -- "Trophy Case" 4446
kjohnson1macOS 13.6.6 Venturaarm644.4.3 (2025-02-28) -- "Trophy Case" 4439
taishanLinux (openEuler 24.03 LTS)aarch644.4.3 (2025-02-28) -- "Trophy Case" 4306
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 266/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CAGEr 2.12.0  (landing page)
Charles Plessy
Snapshot Date: 2025-03-06 13:00 -0500 (Thu, 06 Mar 2025)
git_url: https://git.bioconductor.org/packages/CAGEr
git_branch: RELEASE_3_20
git_last_commit: 492797d
git_last_commit_date: 2024-10-29 09:44:43 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for CAGEr on taishan

To the developers/maintainers of the CAGEr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CAGEr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: CAGEr
Version: 2.12.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data CAGEr
StartedAt: 2025-03-07 00:10:14 -0000 (Fri, 07 Mar 2025)
EndedAt: 2025-03-07 00:11:51 -0000 (Fri, 07 Mar 2025)
EllapsedTime: 97.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data CAGEr
###
##############################################################################
##############################################################################


* checking for file ‘CAGEr/DESCRIPTION’ ... OK
* preparing ‘CAGEr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CAGE_Resources.Rmd’ using rmarkdown
--- finished re-building ‘CAGE_Resources.Rmd’

--- re-building ‘CAGEexp.Rmd’ using rmarkdown

Quitting from lines 215-220 [create_CAGEexp] (CAGEexp.Rmd)
Error: processing vignette 'CAGEexp.Rmd' failed with diagnostics:
invalid class "CAGEexp" object: 'genomeName' must be the name an installed genome package. See 'BSgenome::installed.genomes()' and 'BSgenome::available.genomes()'.
--- failed re-building ‘CAGEexp.Rmd’

SUMMARY: processing the following file failed:
  ‘CAGEexp.Rmd’

Error: Vignette re-building failed.
Execution halted