BioC 3.2: CHECK report for flowCore on perceval

Package: flowCore

Version: 1.36.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings flowCore_1.36.0.tar.gz

StartedAt: 2015-10-20 07:49:54 -0400 (Tue, 20 Oct 2015)

EndedAt: 2015-10-20 07:53:49 -0400 (Tue, 20 Oct 2015)

EllapsedTime: 235.5 seconds

RetCode: 0

Status:  OK

CheckDir: flowCore.Rcheck

Warnings: 0

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings flowCore_1.36.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/flowCore.Rcheck’
* using R version 3.2.2 Patched (2015-10-08 r69496)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowCore/DESCRIPTION’ ... OK
* this is package ‘flowCore’ version ‘1.36.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... NOTE
Found the following apparent object files/libraries:
  src/boost_regex/c_regex_traits.o src/boost_regex/cpp_regex_traits.o
  src/boost_regex/cregex.o src/boost_regex/fileiter.o
  src/boost_regex/icu.o src/boost_regex/instances.o
  src/boost_regex/posix_api.o src/boost_regex/regex_debug.o
  src/boost_regex/regex_raw_buffer.o
  src/boost_regex/regex_traits_defaults.o src/boost_regex/regex.o
  src/boost_regex/static_mutex.o src/boost_regex/usinstances.o
  src/boost_regex/w32_regex_traits.o src/boost_regex/wc_regex_traits.o
  src/boost_regex/wide_posix_api.o src/boost_regex/winstances.o
Object files/libraries should not be included in a source package.
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowCore’ can be installed ... [79s/82s] OK
* checking installed package size ... NOTE
  installed size is 18.4Mb
  sub-directories of 1Mb or more:
    data      5.0Mb
    doc       1.3Mb
    extdata   1.1Mb
    lib       8.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘Rgraphviz’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
rbind2,flowSet-flowSet : .local: warning in assign(i, x[[i]], env =
  env): partial argument match of 'env' to 'envir'
rbind2,flowSet-flowSet : .local: warning in assign(i, y[[i]], env =
  env): partial argument match of 'env' to 'envir'
%in%,flowFrame-norm2Filter: no visible global function definition for
  ‘cov.rob’
spillover,flowSet : .local : <anonymous>: no visible global function
  definition for ‘rangeGate’
split,flowFrame-factor : .local: no visible binding for global variable
  ‘i’
summary,workFlow : .local: no visible binding for global variable ‘wf’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [37s/38s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘run-all.R’ [8s/8s]
 [8s/8s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 5 NOTEs
See
  ‘/Users/biocbuild/bbs-3.2-bioc/meat/flowCore.Rcheck/00check.log’
for details.

* installing *source* package ‘flowCore’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c FastLogicle.cpp -o FastLogicle.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c Hyperlog.cpp -o Hyperlog.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c Logicle.cpp -o Logicle.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c RcppExports.cpp -o RcppExports.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c biexponential.c -o biexponential.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c fcsTextParse.cpp -o fcsTextParse.o
fcsTextParse.cpp:44:80: warning: multi-line comment
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c hyperlogTransform.cpp -o hyperlogTransform.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c inPolygon.c -o inPolygon.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c inPolytope.c -o inPolytope.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c init.c -o init.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c logicleTransform.cpp -o logicleTransform.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c pairVectorRcppWrap.cpp -o pairVectorRcppWrap.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c uint2double.cpp -o uint2double.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c zeroin.c -o zeroin.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/c_regex_traits.cpp -o boost_regex/c_regex_traits.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/cpp_regex_traits.cpp -o boost_regex/cpp_regex_traits.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/cregex.cpp -o boost_regex/cregex.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/fileiter.cpp -o boost_regex/fileiter.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/icu.cpp -o boost_regex/icu.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/instances.cpp -o boost_regex/instances.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/regex.cpp -o boost_regex/regex.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/regex_debug.cpp -o boost_regex/regex_debug.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/regex_raw_buffer.cpp -o boost_regex/regex_raw_buffer.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/regex_traits_defaults.cpp -o boost_regex/regex_traits_defaults.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/static_mutex.cpp -o boost_regex/static_mutex.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/usinstances.cpp -o boost_regex/usinstances.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/w32_regex_traits.cpp -o boost_regex/w32_regex_traits.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/wc_regex_traits.cpp -o boost_regex/wc_regex_traits.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/wide_posix_api.cpp -o boost_regex/wide_posix_api.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/winstances.cpp -o boost_regex/winstances.o
mkdir -p "/Users/biocbuild/bbs-3.2-bioc/meat/flowCore.Rcheck/flowCore/lib"
ar rs "/Users/biocbuild/bbs-3.2-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a" boost_regex/c_regex_traits.o boost_regex/cpp_regex_traits.o boost_regex/cregex.o boost_regex/fileiter.o boost_regex/icu.o boost_regex/instances.o boost_regex/posix_api.o boost_regex/regex.o boost_regex/regex_debug.o boost_regex/regex_raw_buffer.o boost_regex/regex_traits_defaults.o boost_regex/static_mutex.o boost_regex/usinstances.o boost_regex/w32_regex_traits.o boost_regex/wc_regex_traits.o boost_regex/wide_posix_api.o boost_regex/winstances.o
ar: creating archive /Users/biocbuild/bbs-3.2-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a
/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.2-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a(icu.o) has no symbols
/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.2-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a(regex_debug.o) has no symbols
/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.2-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a(usinstances.o) has no symbols
/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.2-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a(w32_regex_traits.o) has no symbols
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o flowCore.so FastLogicle.o Hyperlog.o Logicle.o RcppExports.o biexponential.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o init.o logicleTransform.o pairVectorRcppWrap.o uint2double.o zeroin.o /Users/biocbuild/bbs-3.2-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/flowCore.Rcheck/flowCore/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowCore)

name	user	system	elapsed
EHtrans-class	0.070	0.004	0.074
FCSTransTransform	1.393	0.090	1.483
Subset-methods	0.419	0.027	0.445
actionItem-class	0.002	0.000	0.002
arcsinhTransform	0.043	0.001	0.043
asinht-class	0.035	0.002	0.037
asinhtGml2-class	0.064	0.001	0.065
biexponentialTransform	4.483	0.139	4.624
boundaryFilter-class	0.111	0.009	0.120
characterOrTransformation-class	0.001	0.000	0.002
coerce	0.201	0.026	0.229
compensateActionItem-class	0.001	0.000	0.002
compensateView-class	0.002	0.000	0.001
compensatedParameter-class	0.255	0.019	0.275
compensation-class	0.432	0.087	0.520
dg1polynomial-class	0.038	0.007	0.044
each_col-methods	0.041	0.004	0.045
ellipsoidGate	0.083	0.007	0.089
exponential-class	0.040	0.016	0.056
expressionFilter-class	0.093	0.003	0.096
fcReference-class	0.002	0.001	0.002
filter-methods	0.961	0.091	1.051
filter-on-methods	0.119	0.001	0.121
filterList-class	0.008	0.000	0.008
filterResult-class	0.001	0.000	0.001
filterResultList-class	0.002	0.000	0.001
filterSummary-class	0.001	0.001	0.001
filterSummaryList-class	0.001	0.000	0.001
flowFrame-class	3.905	0.234	4.224
flowSet-class	3.301	0.166	3.469
fsApply	0.177	0.011	0.188
gateActionItem-class	0.003	0.001	0.003
gateView-class	0.001	0.000	0.002
getIndexSort-methods	0.036	0.001	0.037
hyperlog-class	2.654	0.014	2.668
hyperlogtGml2-class	0.061	0.001	0.062
identifier-methods	0.028	0.002	0.031
inverseLogicleTransform	0.747	0.080	0.827
invsplitscale-class	0.035	0.001	0.034
keyword-methods	0.905	0.098	1.017
kmeansFilter	0.207	0.017	0.297
linearTransform	0.046	0.000	0.047
lintGml2-class	0.069	0.002	0.071
lnTransform	1.429	0.106	1.541
logTransform	0.045	0.001	0.046
logarithm-class	0.034	0.001	0.036
logicalFilterResult-class	0.002	0.000	0.002
logicleTransform	0.931	0.078	1.009
logicletGml2-class	0.078	0.002	0.080
logtGml2-class	0.091	0.002	0.094
manyFilterResult-class	0.001	0.000	0.001
multipleFilterResult-class	0.001	0.000	0.001
norm2Filter-class	0.188	0.004	0.191
normalizeActionItem-class	0.002	0.001	0.002
normalizeView-class	0.001	0.000	0.002
parameters-methods	0.042	0.003	0.045
polygonGate	0.075	0.010	0.084
quadGate	0.221	0.002	0.223
quadratic-class	0.034	0.001	0.036
quadraticTransform	0.045	0.004	0.048
ratio-class	0.036	0.002	0.039
ratiotGml2-class	0.067	0.005	0.073
read.FCS	0.065	0.002	0.066
read.FCSheader	0.007	0.002	0.009
read.flowSet	0.120	0.004	0.124
rectangleGate	0.113	0.003	0.116
sampleFilter-class	0.057	0.001	0.059
scaleTransform	0.044	0.004	0.048
singleParameterTransform-class	0.001	0.000	0.002
sinht-class	0.032	0.001	0.033
split-methods	1.388	0.103	1.491
splitScaleTransform	1.381	0.118	1.500
splitscale-class	0.034	0.002	0.037
squareroot-class	0.036	0.002	0.037
subsettingActionItem-class	0.001	0.000	0.001
subsettingView-class	0.001	0.000	0.001
timeFilter-class	1.719	0.093	1.814
transform-class	0.003	0.000	0.003
transformActionItem-class	0.002	0.000	0.002
transformFilter-class	0.146	0.010	0.157
transformList-class	0.732	0.073	0.804
transformMap-class	0.001	0.000	0.001
transformView-class	0.002	0.001	0.002
truncateTransform	0.042	0.003	0.044
unitytransform-class	0.030	0.003	0.033
view-class	0.002	0.000	0.002
workFlow-class	0.004	0.001	0.005
write.FCS	0.085	0.015	0.100
write.flowSet	1.198	0.093	1.298