Mustafa Erhan Ozer
| Snapshot Date: 2024-06-26 14:00 -0400 (Wed, 26 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_19 |
| git_last_commit: 8015edf |
| git_last_commit_date: 2024-04-30 11:49:19 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-06-28 17:42 -0400 (Fri, 28 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4760 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4494 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4508 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4466 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4362 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2112/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.4.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.4.0 |
| Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings SVMDO_1.4.0.tar.gz |
| StartedAt: 2024-06-27 06:47:24 -0400 (Thu, 27 Jun 2024) |
| EndedAt: 2024-06-27 06:53:03 -0400 (Thu, 27 Jun 2024) |
| EllapsedTime: 338.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings SVMDO_1.4.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.0 (2024-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading `shiny::dataTableOutput()` is deprecated as of shiny 1.8.1. Please use `DT::DTOutput()` instead. Since you have a suitable version of DT (>= v0.32.1), shiny::dataTableOutput() will automatically use DT::DTOutput() under-the-hood. If this happens to break your app, set `options(shiny.legacy.datatable = TRUE)` to get the legacy datatable implementation (or `FALSE` to squelch this message). See <https://rstudio.github.io/DT/shiny.html> for more information. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 8813,229,55572,64240,10,1208
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6289,9314,4548,427,3351,3683
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1355,2495,64087,25805,51117,2805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 958,132158,4312,2903,2068,79572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1489,942,7172,6804,170302,56997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3479,275,4728,5367,718,56606
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347,130589,9180,5799,9076,1149
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1019,84062,5919,590,11095,8050
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5364,875,170302,10094,7046,29926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3416,5330,64122,3709,2673,8945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3980,4124,5245,8682,2280,151
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 212,57511,6414,8691,4124,79191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23436,1718,79644,6357,9475,10730
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 178,9563,5139,170302,9104,28976
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7879,1066,63874,2152,496,2348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3565,1586,475,3155,54658,3643
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4715,11232,2932,6401,116931,664
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2597,5598,5195,5277,405,6391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22933,1798,5320,344,2638,7220
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1075,367,6584,1232,617,467
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80309,2146,5825,5265,2068,3406
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347,6357,388753,642489,6093,6445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4780,5176,2776,55586,1738,1182
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2936,6183,22877,5741,3075,6772
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23163,9882,3312,4598,6583,4556
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3309,811,4723,50639,3552,5644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10724,23479,3425,2997,2517,23590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1584,26873,92667,23082,123099,9131
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5836,1182,26291,57128,4522,6715
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1028,9971,7025,2169,7033,407021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9388,712,109,3552,212,51738
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55788,7030,338,5211,6898,4726
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3485,160428,6602,100506742,7408,9945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64900,149775,56606,728441,5092,3087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5175,7422,9369,125170,5331,131669
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 859,5360,80347,1558,6469,27235
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 506,116931,6402,54106,55526,7019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2516,486,2170,51052,134,5595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3688,340706,4283,6406,11136,123283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7284,4055,2030,54210,26291,196743
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4567,10020,1636,2653,5321,192343
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60528,10644,5601,22877,54414,7276
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80724,5106,3145,793,7827,4160
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3689,9971,203,1605,7321,496
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23038,7384,6469,5962,125988,3552
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1537,51052,9722,54931,1232,6007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 875,6406,9122,6348,5914,353500
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2181,1369,840,4729,9255,7084
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2954,406,3456,7408,3482,4615
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7036,84705,3087,2792,29929,4057
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6901,6898,3417,1634,134,1716
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3283,94235,207,643181,846,3574
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 270,8218,8648,100126861,60386,5193
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5624,51458,3574,7137,130589,11136
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9512,2056,9382,10845,384,8029
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10580,3101,4232,5207,1277,6571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3312,3250,1118,8675,6354,5250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 685,6439,5350,10965,406991,142
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1468,435,1347,2688,6690,7200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56848,164656,347411,2328,56922,3768
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3811,53947,6279,3280,940,6523
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2538,56848,3439,3283,90865,4719
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5641,54600,10628,3293,3575,2790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55788,23118,2328,51204,1365,57678
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79949,929,9722,477,6532,1789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 642489,2642,4060,3485,3418,104
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6288,7421,10524,477,23411,3593
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3401,7368,30009,203,1584,26517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7364,1738,7076,8682,84300,27097
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54806,4722,8678,11231,4803,572
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7099,100131801,9968,1565,112817,8799
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3592,80201,706,7827,5105,1571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1435,4792,1605,56052,1738,3329
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4128,3500,1201,3483,8682,5023
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6319,3159,9807,3566,1363,6287
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3303,2908,4256,6280,2788,467
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80339,53345,292,6476,51478,1604
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2693,2099,407009,9722,2646,256297
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2752,79796,949,1052,9507,1786
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
64.04 2.14 66.39
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.76 | 0.01 | 0.86 | |