Mustafa Erhan Ozer
| Snapshot Date: 2024-10-16 14:00 -0400 (Wed, 16 Oct 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: RELEASE_3_19 |
| git_last_commit: 53d7b05 |
| git_last_commit_date: 2024-08-30 17:32:42 -0400 (Fri, 30 Aug 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-10-18 20:41 -0400 (Fri, 18 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4500 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4530 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4480 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2112/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.4.7 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | NA | |||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.4.7 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.4.7.tar.gz |
| StartedAt: 2024-10-17 14:05:48 -0400 (Thu, 17 Oct 2024) |
| EndedAt: 2024-10-17 14:18:13 -0400 (Thu, 17 Oct 2024) |
| EllapsedTime: 744.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.4.7.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.4.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
runGUI 1.368 0.105 8.349
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 1678,285,6897,5617,3779,6522
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2677,7097,3358,3065,3091,29968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84334,6536,5291,6439,5621,23410
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 599,5194,54552,1499,4716,11132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 203859,51608,6338,2937,5702,5860
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5236,5447,104909134,9698,5190,2006
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51021,1352,118,23543,387,8818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7450,84239,391051,4716,151306,493753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406934,8813,5828,23038,3663,8932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3939,203859,170302,54210,155,3978
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2639,6716,7098,463,5313,2571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407024,11132,9968,2888,9498,10857
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 401,3060,1075,4256,2643,5295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1230,4125,3156,4159,593,5499
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79661,2099,7099,407024,6329,2731
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 538,9607,23410,1401,100131801,10008
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9365,23474,53632,1558,3383,79796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4319,57104,1593,5328,486,203068
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57192,570,665,3054,4853,84340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11132,4716,266,5588,3283,1493
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 219,2998,55532,3557,3073,2806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7099,8772,9630,596,3700,3559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4247,336,53346,341,9131,9507
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79572,54331,2776,9415,1544,4744
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2548,2159,2762,2581,84833,114548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6339,999,1436,5369,4656,23038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 348,4256,152078,708,1906,10165
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3485,79587,2847,151,857,27247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9479,3600,958,1621,8694,2271
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6774,51052,3978,23409,2804,10559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5190,353500,3062,201305,51116,10013
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2646,54658,2539,391051,147007,4723
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6402,84889,3117,4684,1555,79736
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1493,4712,6901,55024,9945,3157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2647,255231,5799,23400,2947,150379
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3600,3172,374291,10682,5236,56302
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2713,63899,8772,23590,2944,55340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3945,348,4524,125170,1555,11136
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6811,5373,4000,55270,51611,283459
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 596,2643,5919,3295,1595,7167
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8722,27329,27010,3596,79158,5562
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 130120,10019,2146,10724,5264,9630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10379,8694,1737,1629,6721,2348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 90865,7407,79001,256471,6908,1992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4855,952,10019,9095,8471,6236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2952,9091,999,27089,3552,7390
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7390,2194,7100,255231,100131801,1595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5745,55670,6445,51099,1649,6718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388753,43,79796,1244,6649,1718
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3145,2785,3728,2200,5409,2688
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26503,6834,3251,6928,181,4137
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1201,8675,585,6716,3485,1361
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1392,5601,886,2919,9095,7431
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54549,9997,10000,9559,29926,129787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64240,55270,406934,10935,2647,1340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84061,65993,3929,149461,4149,91949
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79053,55937,6445,3295,2949,5599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9663,23236,4015,5445,9971,26003
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23304,23530,2776,4729,7471,6338
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 875,406913,6324,3122,790,2694
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56848,6786,23395,593,2101,7289
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3157,6908,57192,54658,51082,1803
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3304,54344,4524,2653,23129,6391
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 129787,94235,5052,64801,1605,3157
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3710,2548,5621,1361,51103,128486
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10724,4144,999,51167,1672,57128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 572,54567,3060,4547,3938,51458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5836,1968,6576,5372,3692,1950
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 150,4656,8651,6198,2100,8567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2109,6009,537,518,100303755,79158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64432,5241,8471,65080,27010,7038
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3995,1186,593,2710,5139,7381
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60,1798,6387,5473,3569,1586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2110,4973,5080,6890,9131,10165
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 325,64116,2638,5473,55065,57505
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1543,2587,9779,5925,80222,582
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25828,3728,2936,53905,85569,51079
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4697,253943,5213,4040,4594,90624
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 344,3159,570,7097,6579,2571
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4598,5214,56945,253559,3162,10094
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 53632,1401,3290,55572,3485,2944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51293,3159,9560,6390,1815,6720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4118,5444,1950,56623,2752,186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 384,131669,2785,216,29928,407021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51204,6715,3551,5192,129787,6341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5054,10577,4967,1497,2628,1489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7252,84902,3773,6356,63931,23175
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6515,29968,6602,708,4282,6890
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4700,83548,6868,5629,9414,3875
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 811,4159,84342,2934,7124,1356
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407009,7274,5095,1956,1544,5787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5971,5824,654,718,4726,132158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9445,100506742,4137,4982,3123,3559
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388585,79934,55270,2787,4319,1435
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6770,6347,9560,57176,5306,92483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2784,7124,643181,2200,51052,205327
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 147007,55034,112817,55283,3483,5250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 169026,10062,28958,26003,51083,844
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5122,708,1910,10019,4256,886
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25974,57104,1028,487,3283,6868
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3082,407006,6647,100303755,5563,3141
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 374291,627,3250,10643,3291,537
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3329,23543,5826,64801,1022,9091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3358,652,316,1678,54901,2260
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7037,4967,432369,477,407009,654
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3813,2717,406,4709,25828,6554
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406934,23129,92667,84342,169792,8660
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8799,5584,1737,56945,6821,8842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3156,2334,57048,341,1371,4700
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2184,388962,26003,4159,123283,2947
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200539,54148,24147,35,5473,7384
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79585,5467,4627,80339,100303755,728294
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 154,3329,3158,6199,84833,8517
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3034,10166,54148,388372,54575,387787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4351,48,4137,1798,3157,1893
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
182.178 3.103 215.406
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 1.368 | 0.105 | 8.349 | |