Back to First build/check report with an "external build node"

This page was generated on 2023-06-01 18:17:20 -0400 (Thu, 01 Jun 2023).

HostnameOSArch (*)R versionInstalled pkgs
xps15Linux (Ubuntu 23.04)x86_644.3.0 Patched (2023-05-23 r84466) -- "Already Tomorrow" 544
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BUILD results for vsn on xps15


To the developers/maintainers of the vsn package:
Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 88/91HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
vsn 3.69.0  (landing page)
Wolfgang Huber
Snapshot Date: 2023-06-01 15:10:15 -0400 (Thu, 01 Jun 2023)
git_url: https://git.bioconductor.org/packages/vsn
git_branch: devel
git_last_commit: 08ba084
git_last_commit_date: 2023-04-25 09:38:45 -0400 (Tue, 25 Apr 2023)
xps15Linux (Ubuntu 23.04) / x86_64  OK    ERROR  skipped

Summary

Package: vsn
Version: 3.69.0
Command: /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data vsn
StartedAt: 2023-06-01 12:51:20 -0700 (Thu, 01 Jun 2023)
EndedAt: 2023-06-01 12:51:48 -0700 (Thu, 01 Jun 2023)
EllapsedTime: 28.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/hpages/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data vsn
###
##############################################################################
##############################################################################


* checking for file ‘vsn/DESCRIPTION’ ... OK
* preparing ‘vsn’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘A-vsn.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/RtmprutWTD/Rbuild7848758eed7ed/vsn/vignettes/A-vsn_files/figure-html/nkid-scp-1.png" but not available.
The magick package is required to crop "/tmp/RtmprutWTD/Rbuild7848758eed7ed/vsn/vignettes/A-vsn_files/figure-html/nkid-sdmean1-1.png" but not available.
The magick package is required to crop "/tmp/RtmprutWTD/Rbuild7848758eed7ed/vsn/vignettes/A-vsn_files/figure-html/nkid-sdmean2-1.png" but not available.
The magick package is required to crop "/tmp/RtmprutWTD/Rbuild7848758eed7ed/vsn/vignettes/A-vsn_files/figure-html/nkid-histM-1.png" but not available.
The magick package is required to crop "/tmp/RtmprutWTD/Rbuild7848758eed7ed/vsn/vignettes/A-vsn_files/figure-html/lym-sdmean-1.png" but not available.
The magick package is required to crop "/tmp/RtmprutWTD/Rbuild7848758eed7ed/vsn/vignettes/A-vsn_files/figure-html/lym-M-1.png" but not available.

Quitting from lines 256-259 [loadaffy1] (A-vsn.Rmd)
Error: processing vignette 'A-vsn.Rmd' failed with diagnostics:
there is no package called 'affydata'
--- failed re-building ‘A-vsn.Rmd’

--- re-building ‘C-likelihoodcomputations.Rnw’ using Sweave
--- finished re-building ‘C-likelihoodcomputations.Rnw’

--- re-building ‘D-convergence.Rnw’ using Sweave
--- finished re-building ‘D-convergence.Rnw’

SUMMARY: processing the following file failed:
  ‘A-vsn.Rmd’

Error: Vignette re-building failed.
Execution halted