Back to Using R 4.1.3 to BUILD/CHECK a small subset of 3.18 packages

This page was generated on 2024-03-08 16:41:48 -0500 (Fri, 08 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 655
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 114/118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
vsn 3.70.0  (landing page)
Wolfgang Huber
Snapshot Date: 2024-03-08 15:25:35 -0500 (Fri, 08 Mar 2024)
git_url: https://git.bioconductor.org/packages/vsn
git_branch: RELEASE_3_18
git_last_commit: a0a0c6d
git_last_commit_date: 2023-10-24 09:31:53 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  

INSTALL results for vsn on nebbiolo2


To the developers/maintainers of the vsn package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: vsn
Version: 3.70.0
Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL vsn
StartedAt: 2024-03-08 15:29:07 -0500 (Fri, 08 Mar 2024)
EndedAt: 2024-03-08 15:29:16 -0500 (Fri, 08 Mar 2024)
EllapsedTime: 9.4 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL vsn
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* installing to library ‘/home/hpages/bbs-3.18-bioc-R41/R/site-library’
* installing *source* package ‘vsn’ ...
** using staged installation
** libs
gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c init.c -o init.o
gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c vsn.c -o vsn.o
gcc -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c vsn2.c -o vsn2.o
gcc -shared -L/home/hpages/bbs-3.18-bioc-R41/R/lib -L/usr/local/lib -o vsn.so init.o vsn.o vsn2.o -L/home/hpages/bbs-3.18-bioc-R41/R/lib -lR
installing to /home/hpages/bbs-3.18-bioc-R41/R/site-library/00LOCK-vsn/00new/vsn/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (vsn)