| Back to Using R 4.1.3 to BUILD/CHECK a small subset of 3.18 packages |
This page was generated on 2024-03-08 16:41:48 -0500 (Fri, 08 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 655 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 74/118 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||||
| microRNA 1.60.0 (landing page) "James F. Reid"
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
|
To the developers/maintainers of the microRNA package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: microRNA |
| Version: 1.60.0 |
| Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL microRNA |
| StartedAt: 2024-03-08 15:30:55 -0500 (Fri, 08 Mar 2024) |
| EndedAt: 2024-03-08 15:31:06 -0500 (Fri, 08 Mar 2024) |
| EllapsedTime: 11.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL microRNA
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* installing to library ‘/home/hpages/bbs-3.18-bioc-R41/R/site-library’
* installing *source* package ‘microRNA’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c longest_common_substring.cpp -o longest_common_substring.o
longest_common_substring.cpp: In function ‘SEXPREC* longest_common_substring(SEXP)’:
longest_common_substring.cpp:55:15: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
55 | if (i == len[index] - 1) { // ignore null termination character
| ~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++14 -shared -L/home/hpages/bbs-3.18-bioc-R41/R/lib -L/usr/local/lib -o microRNA.so longest_common_substring.o -L/home/hpages/bbs-3.18-bioc-R41/R/lib -lR
installing to /home/hpages/bbs-3.18-bioc-R41/R/site-library/00LOCK-microRNA/00new/microRNA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (microRNA)