Back to Using R 4.1.3 to BUILD/CHECK a small subset of 3.18 packages

This page was generated on 2024-03-08 16:41:48 -0500 (Fri, 08 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 655
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 71/118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
limma 3.58.1  (landing page)
Gordon Smyth
Snapshot Date: 2024-03-08 15:25:35 -0500 (Fri, 08 Mar 2024)
git_url: https://git.bioconductor.org/packages/limma
git_branch: RELEASE_3_18
git_last_commit: 27e81a0
git_last_commit_date: 2023-10-30 16:50:54 -0500 (Mon, 30 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  

BUILD results for limma on nebbiolo2


To the developers/maintainers of the limma package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: limma
Version: 3.58.1
Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD build --keep-empty-dirs --no-resave-data limma
StartedAt: 2024-03-08 15:46:44 -0500 (Fri, 08 Mar 2024)
EndedAt: 2024-03-08 15:47:11 -0500 (Fri, 08 Mar 2024)
EllapsedTime: 27.0 seconds
RetCode: 0
Status:   OK  
PackageFile: limma_3.58.1.tar.gz
PackageFileSize: 2.833 MiB

Command output

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### Running command:
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###   /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD build --keep-empty-dirs --no-resave-data limma
###
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* checking for file ‘limma/DESCRIPTION’ ... OK
* preparing ‘limma’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘limma_3.58.1.tar.gz’
Warning in sprintf(gettext(fmt, domain = domain), ...) :
  one argument not used by format 'invalid uid value replaced by that for user 'nobody''
Warning: invalid uid value replaced by that for user 'nobody'
Warning in sprintf(gettext(fmt, domain = domain), ...) :
  one argument not used by format 'invalid gid value replaced by that for user 'nobody''
Warning: invalid gid value replaced by that for user 'nobody'