Back to Using R 4.1.3 to BUILD/CHECK a small subset of 3.18 packages

This page was generated on 2024-03-08 16:41:47 -0500 (Fri, 08 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 655
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
apeglm 1.24.0  (landing page)
Anqi Zhu
Snapshot Date: 2024-03-08 15:25:35 -0500 (Fri, 08 Mar 2024)
git_url: https://git.bioconductor.org/packages/apeglm
git_branch: RELEASE_3_18
git_last_commit: b6b76e6
git_last_commit_date: 2023-10-24 10:59:24 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  

BUILD results for apeglm on nebbiolo2


To the developers/maintainers of the apeglm package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: apeglm
Version: 1.24.0
Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD build --keep-empty-dirs --no-resave-data apeglm
StartedAt: 2024-03-08 15:41:31 -0500 (Fri, 08 Mar 2024)
EndedAt: 2024-03-08 15:43:33 -0500 (Fri, 08 Mar 2024)
EllapsedTime: 121.8 seconds
RetCode: 0
Status:   OK  
PackageFile: apeglm_1.24.0.tar.gz
PackageFileSize: 1.06 MiB

Command output

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### Running command:
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###   /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD build --keep-empty-dirs --no-resave-data apeglm
###
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* checking for file ‘apeglm/DESCRIPTION’ ... OK
* preparing ‘apeglm’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
Omitted ‘LazyData’ from DESCRIPTION
* building ‘apeglm_1.24.0.tar.gz’
Warning in sprintf(gettext(fmt, domain = domain), ...) :
  one argument not used by format 'invalid uid value replaced by that for user 'nobody''
Warning: invalid uid value replaced by that for user 'nobody'
Warning in sprintf(gettext(fmt, domain = domain), ...) :
  one argument not used by format 'invalid gid value replaced by that for user 'nobody''
Warning: invalid gid value replaced by that for user 'nobody'