| Back to BiocCheck report for a small subset of BioC 3.18 packages | 
This page was generated on 2023-10-24 11:15:02 -0400 (Tue, 24 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4818 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 29/92 | Hostname | OS / Arch | BIOCCHECK | |||||||
| DelayedMatrixStats 1.23.9  (landing page) Peter Hickey 
 | nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | ERROR | |||||||
| To the developers/maintainers of the DelayedMatrixStats package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: DelayedMatrixStats | 
| Version: 1.23.9 | 
| Command: /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('DelayedMatrixStats_1.23.9.tar.gz')" | 
| StartedAt: 2023-10-24 10:46:20 -0400 (Tue, 24 Oct 2023) | 
| EndedAt: 2023-10-24 10:46:58 -0400 (Tue, 24 Oct 2023) | 
| EllapsedTime: 38.3 seconds | 
| RetCode: None | 
| Status: ERROR | 
| Warnings: 1 | 
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### Running command:
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###   /home/biocbuild/bbs-3.18-bioc/R/bin/Rscript -e "BiocCheck::BiocCheck('DelayedMatrixStats_1.23.9.tar.gz')"
###
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─ BiocCheckVersion: 1.39.0
─ BiocVersion: 3.18
─ Package: DelayedMatrixStats
─ PackageVersion: 1.23.9
─ sourceDir: /tmp/Rtmpa5iEbS/file38ae406d46b485/DelayedMatrixStats
─ installDir: /tmp/Rtmpa5iEbS/file38ae404baeb40a
─ BiocCheckDir: /home/biocbuild/bbs-3.18-bioc-testing/meat/DelayedMatrixStats.BiocCheck
─ platform: unix
─ isTarBall: TRUE
* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
    Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
* Checking for recommeded fields in DESCRIPTION...
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of DelayedMatrixStats...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
    * NOTE: The recommended function length is 50 lines or less. There
      are 2 functions greater than 50 lines.
* Checking man page documentation...
    * WARNING: Empty or missing \value sections found in man pages.
    * ERROR: At least 80% of man pages documenting exported objects
      must have runnable examples.
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
  and vignette source...
    * NOTE: Consider shorter lines; 247 lines (3%) are > 80 characters
      long.
    * NOTE: Consider multiples of 4 spaces for line indents; 2457 lines
      (30%) are not.
    See https://contributions.bioconductor.org/r-code.html
    See styler package: https://cran.r-project.org/package=styler as
      described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
    * NOTE: Cannot determine whether maintainer is subscribed to the
      Bioc-Devel mailing list (requires admin credentials). Subscribe
      here: https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
    Maintainer is registered at support site.
    Package name is in support site watched tags.
─ BiocCheck results ──
1 ERRORS | 1 WARNINGS | 4 NOTES
See the DelayedMatrixStats.BiocCheck folder and run
    browseVignettes(package = 'BiocCheck')
for details.