| Back to Using R 4.1.3 to BUILD/CHECK a small subset of 3.18 packages |
This page was generated on 2024-03-08 16:41:47 -0500 (Fri, 08 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 655 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 20/118 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||||
| BiocNeighbors 1.20.2 (landing page) Aaron Lun
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||
|
To the developers/maintainers of the BiocNeighbors package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiocNeighbors |
| Version: 1.20.2 |
| Command: /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL BiocNeighbors |
| StartedAt: 2024-03-08 15:29:10 -0500 (Fri, 08 Mar 2024) |
| EndedAt: 2024-03-08 15:31:15 -0500 (Fri, 08 Mar 2024) |
| EllapsedTime: 125.1 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD INSTALL BiocNeighbors ### ############################################################################## ############################################################################## * installing to library ‘/home/hpages/bbs-3.18-bioc-R41/R/site-library’ * installing *source* package ‘BiocNeighbors’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c annoy.cpp -o annoy.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c build_annoy.cpp -o build_annoy.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c build_hnsw.cpp -o build_hnsw.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c build_vptree.cpp -o build_vptree.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c distances.cpp -o distances.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c exhaustive.cpp -o exhaustive.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c find_annoy.cpp -o find_annoy.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c find_exhaustive.cpp -o find_exhaustive.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c find_hnsw.cpp -o find_hnsw.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c find_kmknn.cpp -o find_kmknn.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c find_mutual_nns.cpp -o find_mutual_nns.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c find_vptree.cpp -o find_vptree.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c hnsw.cpp -o hnsw.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c kmknn.cpp -o kmknn.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c query_annoy.cpp -o query_annoy.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c query_exhaustive.cpp -o query_exhaustive.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c query_hnsw.cpp -o query_hnsw.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c query_kmknn.cpp -o query_kmknn.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c query_vptree.cpp -o query_vptree.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c utils.cpp -o utils.o g++ -std=gnu++11 -I"/home/hpages/bbs-3.18-bioc-R41/R/include" -DNDEBUG -I../inst/include/ -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/Rcpp/include' -I'/home/hpages/bbs-3.18-bioc-R41/R/site-library/RcppHNSW/include' -I/usr/local/include -fpic -g -O2 -Wall -c vptree.cpp -o vptree.o g++ -std=gnu++11 -shared -L/home/hpages/bbs-3.18-bioc-R41/R/lib -L/usr/local/lib -o BiocNeighbors.so RcppExports.o annoy.o build_annoy.o build_hnsw.o build_vptree.o distances.o exhaustive.o find_annoy.o find_exhaustive.o find_hnsw.o find_kmknn.o find_mutual_nns.o find_vptree.o hnsw.o kmknn.o query_annoy.o query_exhaustive.o query_hnsw.o query_kmknn.o query_vptree.o utils.o vptree.o -L/home/hpages/bbs-3.18-bioc-R41/R/lib -lR installing to /home/hpages/bbs-3.18-bioc-R41/R/site-library/00LOCK-BiocNeighbors/00new/BiocNeighbors/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocNeighbors)