Back to Mac ARM64 build report for BioC 3.18 |
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This page was generated on 2024-04-18 11:32:12 -0400 (Thu, 18 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1046/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
IRISFGM 1.10.0 (landing page) Yuzhou Chang
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
To the developers/maintainers of the IRISFGM package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: IRISFGM |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL IRISFGM |
StartedAt: 2024-04-16 12:45:21 -0400 (Tue, 16 Apr 2024) |
EndedAt: 2024-04-16 12:46:53 -0400 (Tue, 16 Apr 2024) |
EllapsedTime: 92.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL IRISFGM ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘IRISFGM’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’ using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’ using C++11 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -DVER=2.08 -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -DVER=2.08 -fPIC -falign-functions=64 -Wall -g -O2 -c cluster.cpp -o cluster.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -DVER=2.08 -fPIC -falign-functions=64 -Wall -g -O2 -c expand.cpp -o expand.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -DVER=2.08 -fPIC -falign-functions=64 -Wall -g -O2 -c get_options.cpp -o get_options.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c getline.c -o getline.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -DVER=2.08 -fPIC -falign-functions=64 -Wall -g -O2 -c main.cpp -o main.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -DVER=2.08 -fPIC -falign-functions=64 -Wall -g -O2 -c make_graph.cpp -o make_graph.o make_graph.cpp:51:5: warning: variable 'i' is incremented both in the loop header and in the loop body [-Wfor-loop-analysis] i++; ^ make_graph.cpp:45:29: note: incremented here for (int i = 0; i < cols; i++) { ^ 1 warning generated. clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -DVER=2.08 -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_irisfgm.cpp -o rcpp_irisfgm.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -DVER=2.08 -fPIC -falign-functions=64 -Wall -g -O2 -c read_array.cpp -o read_array.o read_array.cpp:882:43: warning: format specifies type 'int' but the argument has type 'value_type' (aka 'unsigned long') [-Wformat] fprintf(F2, "%s_%d", genes_n[id], eflags[id][i]); ~~ ^~~~~~~~~~~~~ %lu read_array.cpp:1376:43: warning: format specifies type 'int' but the argument has type 'value_type' (aka 'unsigned long') [-Wformat] fprintf(F2, "%s_%d", genes_n[id], eflags[id][i]); ~~ ^~~~~~~~~~~~~ %lu 2 warnings generated. clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -DVER=2.08 -fPIC -falign-functions=64 -Wall -g -O2 -c struct.cpp -o struct.o struct.cpp:75:15: warning: variable 'lastTime' set but not used [-Wunused-but-set-variable] static long lastTime = 0; ^ 1 warning generated. clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -DVER=2.08 -fPIC -falign-functions=64 -Wall -g -O2 -c write_block.cpp -o write_block.o clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o IRISFGM.so RcppExports.o cluster.o expand.o get_options.o getline.o main.o make_graph.o rcpp_irisfgm.o read_array.o struct.o write_block.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/00LOCK-IRISFGM/00new/IRISFGM/libs ** R ** data ** byte-compile and prepare package for lazy loading Creating a generic function from function ‘ReadFrom10X_h5’ in package ‘IRISFGM’ Creating a generic function from function ‘ReadFrom10X_folder’ in package ‘IRISFGM’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRISFGM)