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This page was generated on 2024-04-18 11:32:12 -0400 (Thu, 18 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson1macOS 13.6.1 Venturaarm644.3.3 (2024-02-29) -- "Angel Food Cake" 4388
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1046/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IRISFGM 1.10.0  (landing page)
Yuzhou Chang
Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/IRISFGM
git_branch: RELEASE_3_18
git_last_commit: 27aef48
git_last_commit_date: 2023-10-24 11:30:04 -0400 (Tue, 24 Oct 2023)
kjohnson1macOS 13.6.1 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for IRISFGM on kjohnson1


To the developers/maintainers of the IRISFGM package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: IRISFGM
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data IRISFGM
StartedAt: 2024-04-16 20:29:10 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 20:31:31 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 141.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data IRISFGM
###
##############################################################################
##############################################################################


* checking for file ‘IRISFGM/DESCRIPTION’ ... OK
* preparing ‘IRISFGM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘IRISFGM_Rpackage.Rmd’ using rmarkdown
2024-04-16 20:31:17.248 R[74723:449658242] XType: Using static font registry.
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

Quitting from lines 231-234 [Run_dimReduce] (IRISFGM_Rpackage.Rmd)
Error: processing vignette 'IRISFGM_Rpackage.Rmd' failed with diagnostics:
No layer matching pattern 'data' found. Please run NormalizeData and retry
--- failed re-building ‘IRISFGM_Rpackage.Rmd’

SUMMARY: processing the following file failed:
  ‘IRISFGM_Rpackage.Rmd’

Error: Vignette re-building failed.
Execution halted