Lydia King
| Snapshot Date: 2024-04-16 09:00:03 -0400 (Tue, 16 Apr 2024) |
| git_url: https://git.bioconductor.org/packages/GNOSIS |
| git_branch: RELEASE_3_18 |
| git_last_commit: e38823a |
| git_last_commit_date: 2023-10-24 11:52:23 -0400 (Tue, 24 Oct 2023) |
| Back to Mac ARM64 build report for BioC 3.18 |
|
This page was generated on 2024-04-18 11:32:11 -0400 (Thu, 18 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 877/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GNOSIS 1.0.0 (landing page) Lydia King
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | WARNINGS | OK | | |||||||
|
To the developers/maintainers of the GNOSIS package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GNOSIS |
| Version: 1.0.0 |
| Command: rm -rf GNOSIS.buildbin-libdir && mkdir GNOSIS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GNOSIS_1.0.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R GNOSIS.buildbin-libdir |
| StartedAt: 2024-04-18 09:32:26 -0400 (Thu, 18 Apr 2024) |
| EndedAt: 2024-04-18 09:33:55 -0400 (Thu, 18 Apr 2024) |
| EllapsedTime: 88.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GNOSIS_1.0.0.tgz |
| PackageFileSize: 2.531 MiB |
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### Running command:
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### rm -rf GNOSIS.buildbin-libdir && mkdir GNOSIS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GNOSIS_1.0.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R GNOSIS.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GNOSIS.buildbin-libdir GNOSIS_1.0.0.tar.gz'
>>>>>>>
* installing *source* package ‘GNOSIS’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning messages:
1: In normalizePath(tools::R_user_dir("R.cache", which = "cache")) :
path[1]="/Users/biocbuild/Library/Caches/org.R-project.R/R/R.cache": No such file or directory
2: In normalizePath(tools::R_user_dir("R.cache", which = "cache")) :
path[1]="/Users/biocbuild/Library/Caches/org.R-project.R/R/R.cache": No such file or directory
3: In normalizePath(tools::R_user_dir("R.cache", which = "cache")) :
path[1]="/Users/biocbuild/Library/Caches/org.R-project.R/R/R.cache": No such file or directory
Warning: replacing previous import ‘shinydashboard::taskItem’ by ‘shinydashboardPlus::taskItem’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::dashboardHeader’ by ‘shinydashboardPlus::dashboardHeader’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::box’ by ‘shinydashboardPlus::box’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::messageItem’ by ‘shinydashboardPlus::messageItem’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::dashboardSidebar’ by ‘shinydashboardPlus::dashboardSidebar’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::dashboardPage’ by ‘shinydashboardPlus::dashboardPage’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinyWidgets::progressBar’ by ‘shinydashboardPlus::progressBar’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::notificationItem’ by ‘shinydashboardPlus::notificationItem’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shiny::dataTableOutput’ by ‘DT::dataTableOutput’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shiny::renderDataTable’ by ‘DT::renderDataTable’ when loading ‘GNOSIS’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in normalizePath(tools::R_user_dir("R.cache", which = "cache")) :
path[1]="/Users/biocbuild/Library/Caches/org.R-project.R/R/R.cache": No such file or directory
Warning in normalizePath(tools::R_user_dir("R.cache", which = "cache")) :
path[1]="/Users/biocbuild/Library/Caches/org.R-project.R/R/R.cache": No such file or directory
Warning in normalizePath(tools::R_user_dir("R.cache", which = "cache")) :
path[1]="/Users/biocbuild/Library/Caches/org.R-project.R/R/R.cache": No such file or directory
Warning: replacing previous import ‘shinydashboard::taskItem’ by ‘shinydashboardPlus::taskItem’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::dashboardHeader’ by ‘shinydashboardPlus::dashboardHeader’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::box’ by ‘shinydashboardPlus::box’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::messageItem’ by ‘shinydashboardPlus::messageItem’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::dashboardSidebar’ by ‘shinydashboardPlus::dashboardSidebar’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::dashboardPage’ by ‘shinydashboardPlus::dashboardPage’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinyWidgets::progressBar’ by ‘shinydashboardPlus::progressBar’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::notificationItem’ by ‘shinydashboardPlus::notificationItem’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shiny::dataTableOutput’ by ‘DT::dataTableOutput’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shiny::renderDataTable’ by ‘DT::renderDataTable’ when loading ‘GNOSIS’
** testing if installed package can be loaded from final location
Warning in normalizePath(tools::R_user_dir("R.cache", which = "cache")) :
path[1]="/Users/biocbuild/Library/Caches/org.R-project.R/R/R.cache": No such file or directory
Warning in normalizePath(tools::R_user_dir("R.cache", which = "cache")) :
path[1]="/Users/biocbuild/Library/Caches/org.R-project.R/R/R.cache": No such file or directory
Warning in normalizePath(tools::R_user_dir("R.cache", which = "cache")) :
path[1]="/Users/biocbuild/Library/Caches/org.R-project.R/R/R.cache": No such file or directory
Warning: replacing previous import ‘shinydashboard::taskItem’ by ‘shinydashboardPlus::taskItem’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::dashboardHeader’ by ‘shinydashboardPlus::dashboardHeader’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::box’ by ‘shinydashboardPlus::box’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::messageItem’ by ‘shinydashboardPlus::messageItem’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::dashboardSidebar’ by ‘shinydashboardPlus::dashboardSidebar’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::dashboardPage’ by ‘shinydashboardPlus::dashboardPage’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinyWidgets::progressBar’ by ‘shinydashboardPlus::progressBar’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shinydashboard::notificationItem’ by ‘shinydashboardPlus::notificationItem’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shiny::dataTableOutput’ by ‘DT::dataTableOutput’ when loading ‘GNOSIS’
Warning: replacing previous import ‘shiny::renderDataTable’ by ‘DT::renderDataTable’ when loading ‘GNOSIS’
** testing if installed package keeps a record of temporary installation path
* DONE (GNOSIS)