| Back to Long Tests report for BioC 3.18 |
This page was generated on 2024-04-13 23:55:02 -0400 (Sat, 13 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4675 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.3 (2024-02-29 ucrt) -- "Angel Food Cake" | 4413 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4436 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 11/30 | Hostname | OS / Arch | CHECK | |||||||
Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | ERROR | |||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | ERROR | ||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | ERROR | ||||||||
|
To the developers/maintainers of the biodbMirbase package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbMirbase |
| Version: 1.6.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbMirbase_1.6.0.tar.gz |
| StartedAt: 2024-04-13 16:04:28 -0400 (Sat, 13 Apr 2024) |
| EndedAt: 2024-04-13 16:04:32 -0400 (Sat, 13 Apr 2024) |
| EllapsedTime: 3.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: biodbMirbase.Rcheck |
| Warnings: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbMirbase_1.6.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbMirbase.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbMirbase/DESCRIPTION’ ... OK
* this is package ‘biodbMirbase’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbMirbase’ can be installed ... ERROR
Installation failed.
See ‘/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbMirbase.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbMirbase.Rcheck/00check.log’
for details.
biodbMirbase.Rcheck/00install.out
* installing *source* package ‘biodbMirbase’ ...
** using staged installation
** R
Error in .install_package_code_files(".", instdir) :
files in 'Collate' field missing from '/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbMirbase.Rcheck/00_pkg_src/biodbMirbase/R':
zzz.R
ERROR: unable to collate and parse R files for package ‘biodbMirbase’
* removing ‘/Users/biocbuild/bbs-3.18-bioc-longtests/meat/biodbMirbase.Rcheck/biodbMirbase’