Back to Multiple platform build/check report for BioC 3.17 |
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This page was generated on 2023-04-12 10:55:37 -0400 (Wed, 12 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | 4.3.0 alpha (2023-04-03 r84154) | 4547 |
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" | 4333 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
Package 941/2207 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.5.4 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||||
Package: HPiP |
Version: 1.5.4 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings HPiP_1.5.4.tar.gz |
StartedAt: 2023-04-12 06:50:43 -0400 (Wed, 12 Apr 2023) |
EndedAt: 2023-04-12 07:06:21 -0400 (Wed, 12 Apr 2023) |
EllapsedTime: 937.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings HPiP_1.5.4.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck’ * using R Under development (unstable) (2023-02-14 r83833) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 GNU Fortran (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0 * running under: Ubuntu 20.04.6 LTS * using session charset: UTF-8 * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.5.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 37.092 1.040 38.135 corr_plot 34.246 0.824 35.553 FSmethod 33.841 0.663 35.611 pred_ensembel 14.083 0.474 11.038 enrichfindP 0.450 0.060 51.329 getFASTA 0.099 0.012 5.003 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2023-02-14 r83833) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 103.578215 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 98.644600 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 101.240499 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 98.505991 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 97.764134 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 97.621620 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 112.171737 iter 10 value 94.484212 iter 10 value 94.484211 iter 10 value 94.484211 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 95.398139 final value 93.701657 converged Fitting Repeat 4 # weights: 305 initial value 98.399810 iter 10 value 94.300330 iter 20 value 92.214593 iter 30 value 92.210364 iter 40 value 92.209883 iter 40 value 92.209883 iter 40 value 92.209883 final value 92.209883 converged Fitting Repeat 5 # weights: 305 initial value 101.518173 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 101.591302 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 95.924153 iter 10 value 94.264859 iter 10 value 94.264858 iter 10 value 94.264858 final value 94.264858 converged Fitting Repeat 3 # weights: 507 initial value 105.005810 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 102.912252 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 109.319849 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 110.039822 iter 10 value 94.490802 iter 20 value 94.314270 iter 30 value 91.388358 iter 40 value 88.847313 iter 50 value 88.376297 iter 60 value 87.032344 iter 70 value 87.027402 final value 87.027397 converged Fitting Repeat 2 # weights: 103 initial value 106.796018 iter 10 value 94.486407 iter 20 value 91.672509 iter 30 value 87.940720 iter 40 value 87.579687 iter 50 value 87.120950 iter 60 value 87.034115 iter 70 value 87.028063 final value 87.028058 converged Fitting Repeat 3 # weights: 103 initial value 97.690460 iter 10 value 94.457641 iter 20 value 86.509918 iter 30 value 85.871352 iter 40 value 85.788541 iter 50 value 85.711258 iter 60 value 85.668123 final value 85.664386 converged Fitting Repeat 4 # weights: 103 initial value 103.934361 iter 10 value 94.487789 iter 20 value 91.417510 iter 30 value 90.094788 iter 40 value 87.662679 iter 50 value 87.143327 iter 60 value 87.027658 final value 87.027398 converged Fitting Repeat 5 # weights: 103 initial value 99.545769 iter 10 value 89.809294 iter 20 value 87.701294 iter 30 value 84.355170 iter 40 value 84.154475 iter 50 value 83.903932 iter 60 value 83.715249 iter 70 value 83.544814 iter 80 value 83.520464 final value 83.520417 converged Fitting Repeat 1 # weights: 305 initial value 99.959514 iter 10 value 94.434756 iter 20 value 86.928385 iter 30 value 84.979074 iter 40 value 84.714269 iter 50 value 84.004426 iter 60 value 83.385202 iter 70 value 83.088686 iter 80 value 83.065377 iter 90 value 83.035601 iter 100 value 82.989469 final value 82.989469 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 104.126689 iter 10 value 94.493703 iter 20 value 93.100488 iter 30 value 89.274620 iter 40 value 86.822070 iter 50 value 85.144969 iter 60 value 84.377431 iter 70 value 84.162127 iter 80 value 83.512962 iter 90 value 83.103771 iter 100 value 82.912107 final value 82.912107 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.072941 iter 10 value 94.490130 iter 20 value 87.951517 iter 30 value 86.743744 iter 40 value 86.018576 iter 50 value 85.858620 iter 60 value 84.688913 iter 70 value 84.045740 iter 80 value 83.930018 iter 90 value 83.862596 iter 100 value 83.768187 final value 83.768187 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 109.762943 iter 10 value 94.500675 iter 20 value 90.451649 iter 30 value 84.954207 iter 40 value 84.274969 iter 50 value 83.872585 iter 60 value 83.820605 iter 70 value 83.764156 iter 80 value 83.517260 iter 90 value 83.349401 iter 100 value 82.983733 final value 82.983733 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 107.130417 iter 10 value 94.355753 iter 20 value 90.038560 iter 30 value 86.221823 iter 40 value 85.859354 iter 50 value 85.024005 iter 60 value 83.546968 iter 70 value 83.221941 iter 80 value 82.987285 iter 90 value 82.754689 iter 100 value 82.459950 final value 82.459950 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 111.350864 iter 10 value 94.526991 iter 20 value 89.665615 iter 30 value 85.422061 iter 40 value 84.803747 iter 50 value 83.854713 iter 60 value 83.336723 iter 70 value 82.889131 iter 80 value 82.509519 iter 90 value 82.350927 iter 100 value 82.261015 final value 82.261015 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.619631 iter 10 value 93.638789 iter 20 value 88.883512 iter 30 value 86.503988 iter 40 value 85.342196 iter 50 value 85.119971 iter 60 value 84.846201 iter 70 value 84.117713 iter 80 value 83.627407 iter 90 value 83.084876 iter 100 value 82.776675 final value 82.776675 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 129.320924 iter 10 value 94.565523 iter 20 value 91.848748 iter 30 value 89.020534 iter 40 value 86.100891 iter 50 value 85.005229 iter 60 value 84.536537 iter 70 value 84.150510 iter 80 value 83.692429 iter 90 value 82.500206 iter 100 value 82.246728 final value 82.246728 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 119.633336 iter 10 value 95.931207 iter 20 value 91.791111 iter 30 value 86.393810 iter 40 value 84.835607 iter 50 value 83.645961 iter 60 value 82.883050 iter 70 value 82.814729 iter 80 value 82.663121 iter 90 value 82.405281 iter 100 value 82.306657 final value 82.306657 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 134.501667 iter 10 value 96.564636 iter 20 value 86.870998 iter 30 value 85.634470 iter 40 value 83.783408 iter 50 value 83.087012 iter 60 value 82.899365 iter 70 value 82.759898 iter 80 value 82.495280 iter 90 value 82.360395 iter 100 value 82.270838 final value 82.270838 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.212283 final value 94.430393 converged Fitting Repeat 2 # weights: 103 initial value 95.153097 iter 10 value 94.485735 iter 20 value 94.355535 iter 30 value 89.636503 iter 40 value 88.898332 iter 50 value 85.986688 iter 60 value 85.977603 final value 85.977514 converged Fitting Repeat 3 # weights: 103 initial value 98.161197 iter 10 value 94.430970 iter 20 value 94.293708 iter 30 value 94.159456 final value 94.157650 converged Fitting Repeat 4 # weights: 103 initial value 103.786517 final value 94.485885 converged Fitting Repeat 5 # weights: 103 initial value 104.469371 final value 94.485656 converged Fitting Repeat 1 # weights: 305 initial value 106.609189 iter 10 value 94.491947 iter 20 value 93.985430 iter 30 value 90.849789 iter 40 value 90.845292 iter 50 value 90.844573 iter 60 value 90.843935 final value 90.843916 converged Fitting Repeat 2 # weights: 305 initial value 124.819231 iter 10 value 94.489495 iter 20 value 94.350835 iter 30 value 87.131207 iter 40 value 87.071627 iter 50 value 84.932790 iter 60 value 83.390225 iter 70 value 83.235569 iter 80 value 83.076419 iter 90 value 83.075824 iter 100 value 83.046365 final value 83.046365 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 103.245640 iter 10 value 87.109908 iter 20 value 87.081095 final value 87.080076 converged Fitting Repeat 4 # weights: 305 initial value 97.028663 iter 10 value 87.042671 iter 20 value 86.744211 iter 30 value 86.742249 final value 86.742142 converged Fitting Repeat 5 # weights: 305 initial value 123.023449 iter 10 value 94.280286 iter 20 value 94.277497 iter 30 value 88.872471 iter 40 value 88.707105 iter 50 value 88.703817 iter 60 value 85.487452 iter 70 value 85.331492 iter 70 value 85.331491 iter 70 value 85.331491 final value 85.331491 converged Fitting Repeat 1 # weights: 507 initial value 128.770886 iter 10 value 94.283514 iter 20 value 94.277348 iter 30 value 94.275484 final value 94.275472 converged Fitting Repeat 2 # weights: 507 initial value 100.455947 iter 10 value 94.217371 iter 20 value 94.210450 iter 30 value 94.076188 iter 40 value 88.008386 iter 50 value 85.488946 iter 60 value 85.343592 iter 70 value 85.331393 iter 80 value 85.331272 iter 90 value 85.330671 iter 90 value 85.330671 final value 85.330671 converged Fitting Repeat 3 # weights: 507 initial value 96.468743 iter 10 value 93.702060 iter 20 value 93.452305 iter 30 value 93.450558 iter 40 value 93.449908 iter 50 value 93.448783 iter 60 value 92.841901 iter 70 value 89.662741 final value 89.662432 converged Fitting Repeat 4 # weights: 507 initial value 102.993821 iter 10 value 94.491762 iter 20 value 93.367989 iter 30 value 83.588556 iter 40 value 83.368624 iter 50 value 83.274068 final value 83.274041 converged Fitting Repeat 5 # weights: 507 initial value 99.935015 iter 10 value 90.090510 iter 20 value 90.026317 iter 30 value 89.970043 iter 40 value 89.685346 iter 50 value 89.648392 final value 89.648000 converged Fitting Repeat 1 # weights: 103 initial value 96.999473 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 102.359474 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 95.209889 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 95.539716 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 98.524684 final value 93.867391 converged Fitting Repeat 1 # weights: 305 initial value 101.373138 iter 10 value 93.737832 iter 20 value 92.522433 iter 30 value 92.522048 final value 92.522043 converged Fitting Repeat 2 # weights: 305 initial value 101.011113 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 94.711412 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 97.024530 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 111.392435 final value 94.052909 converged Fitting Repeat 1 # weights: 507 initial value 104.366960 iter 10 value 92.475116 iter 20 value 83.706335 iter 30 value 83.662316 final value 83.661890 converged Fitting Repeat 2 # weights: 507 initial value 108.679057 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 101.508973 iter 10 value 89.537940 iter 20 value 89.059100 iter 30 value 88.448897 final value 88.448880 converged Fitting Repeat 4 # weights: 507 initial value 101.099033 iter 10 value 91.645844 iter 20 value 88.449509 iter 30 value 86.898054 iter 40 value 86.895935 final value 86.895932 converged Fitting Repeat 5 # weights: 507 initial value 97.412772 final value 93.867391 converged Fitting Repeat 1 # weights: 103 initial value 98.192318 iter 10 value 93.936734 iter 20 value 92.134489 iter 30 value 91.051057 iter 40 value 90.742831 iter 50 value 90.527834 final value 90.517269 converged Fitting Repeat 2 # weights: 103 initial value 115.916962 iter 10 value 94.866273 iter 20 value 94.049686 iter 30 value 90.157164 iter 40 value 88.394038 iter 50 value 84.722115 iter 60 value 83.397785 iter 70 value 83.012190 iter 80 value 82.970736 final value 82.962702 converged Fitting Repeat 3 # weights: 103 initial value 102.788237 iter 10 value 94.090697 iter 20 value 94.056736 iter 30 value 94.035111 iter 40 value 87.859136 iter 50 value 85.029112 iter 60 value 84.024417 iter 70 value 83.203038 iter 80 value 82.646357 iter 90 value 82.528926 final value 82.528662 converged Fitting Repeat 4 # weights: 103 initial value 105.035836 iter 10 value 93.951449 iter 20 value 88.442019 iter 30 value 86.822134 iter 40 value 84.552900 iter 50 value 83.153397 iter 60 value 82.688870 iter 70 value 82.399980 iter 80 value 82.015791 final value 82.015781 converged Fitting Repeat 5 # weights: 103 initial value 98.718100 iter 10 value 94.064434 iter 20 value 94.052955 iter 30 value 84.532641 iter 40 value 84.247880 iter 50 value 82.193278 iter 60 value 80.471688 iter 70 value 80.411566 iter 80 value 79.985842 final value 79.984018 converged Fitting Repeat 1 # weights: 305 initial value 102.024087 iter 10 value 94.314698 iter 20 value 85.158372 iter 30 value 83.816941 iter 40 value 81.193817 iter 50 value 79.695910 iter 60 value 79.571515 iter 70 value 79.003661 iter 80 value 78.758368 iter 90 value 78.716963 iter 100 value 78.706820 final value 78.706820 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.504311 iter 10 value 92.440781 iter 20 value 85.281099 iter 30 value 84.079382 iter 40 value 83.815242 iter 50 value 83.011977 iter 60 value 81.375903 iter 70 value 79.871908 iter 80 value 79.094943 iter 90 value 79.012527 iter 100 value 78.849169 final value 78.849169 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 112.507307 iter 10 value 95.109476 iter 20 value 85.793346 iter 30 value 84.796634 iter 40 value 84.313543 iter 50 value 84.201169 iter 60 value 82.650619 iter 70 value 79.606811 iter 80 value 79.163493 iter 90 value 78.836068 iter 100 value 78.684904 final value 78.684904 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 107.381291 iter 10 value 93.866933 iter 20 value 81.632949 iter 30 value 81.031326 iter 40 value 80.018783 iter 50 value 79.345347 iter 60 value 79.015938 iter 70 value 78.966942 iter 80 value 78.935963 iter 90 value 78.574423 iter 100 value 78.341915 final value 78.341915 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.019455 iter 10 value 94.231697 iter 20 value 93.935229 iter 30 value 87.104957 iter 40 value 84.775777 iter 50 value 83.716447 iter 60 value 83.155086 iter 70 value 80.571686 iter 80 value 78.997436 iter 90 value 78.725941 iter 100 value 78.655677 final value 78.655677 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 110.972979 iter 10 value 99.714158 iter 20 value 95.522147 iter 30 value 94.069707 iter 40 value 93.077924 iter 50 value 92.017630 iter 60 value 83.676863 iter 70 value 81.014376 iter 80 value 80.182826 iter 90 value 80.097010 iter 100 value 79.767184 final value 79.767184 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 108.195100 iter 10 value 94.464936 iter 20 value 88.651975 iter 30 value 85.688810 iter 40 value 84.335957 iter 50 value 83.789219 iter 60 value 80.532351 iter 70 value 79.616220 iter 80 value 79.334388 iter 90 value 78.641513 iter 100 value 78.519672 final value 78.519672 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 108.805288 iter 10 value 95.117452 iter 20 value 90.454489 iter 30 value 86.254611 iter 40 value 83.066668 iter 50 value 82.806556 iter 60 value 82.513391 iter 70 value 81.508272 iter 80 value 81.176745 iter 90 value 81.023280 iter 100 value 80.924571 final value 80.924571 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 108.675111 iter 10 value 94.840803 iter 20 value 93.119136 iter 30 value 91.449560 iter 40 value 89.518050 iter 50 value 85.283703 iter 60 value 84.960337 iter 70 value 83.205877 iter 80 value 82.888186 iter 90 value 82.417077 iter 100 value 80.901771 final value 80.901771 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 143.581045 iter 10 value 94.800062 iter 20 value 86.480367 iter 30 value 83.944084 iter 40 value 82.948124 iter 50 value 81.892895 iter 60 value 79.109956 iter 70 value 78.859587 iter 80 value 78.705614 iter 90 value 78.650595 iter 100 value 78.598474 final value 78.598474 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 102.377302 final value 94.054400 converged Fitting Repeat 2 # weights: 103 initial value 101.368338 final value 94.054308 converged Fitting Repeat 3 # weights: 103 initial value 100.271904 final value 94.056913 converged Fitting Repeat 4 # weights: 103 initial value 99.634485 iter 10 value 85.309348 final value 84.095402 converged Fitting Repeat 5 # weights: 103 initial value 95.532289 iter 10 value 93.520130 iter 20 value 89.737896 iter 30 value 87.634575 iter 40 value 87.206250 iter 50 value 84.413126 iter 60 value 84.359894 iter 70 value 84.358879 iter 80 value 84.343047 iter 90 value 83.179554 final value 83.178525 converged Fitting Repeat 1 # weights: 305 initial value 99.033437 iter 10 value 94.058270 iter 20 value 94.047596 final value 93.867466 converged Fitting Repeat 2 # weights: 305 initial value 98.126284 iter 10 value 94.057769 iter 20 value 93.902084 iter 30 value 86.548683 iter 40 value 86.022669 iter 50 value 83.353737 iter 60 value 83.097448 final value 83.095996 converged Fitting Repeat 3 # weights: 305 initial value 123.592107 iter 10 value 93.873462 iter 20 value 93.869337 iter 30 value 86.580486 iter 40 value 85.933889 iter 50 value 85.932941 iter 50 value 85.932940 iter 50 value 85.932940 final value 85.932940 converged Fitting Repeat 4 # weights: 305 initial value 97.671455 iter 10 value 94.057923 iter 20 value 93.905292 iter 30 value 92.266809 iter 40 value 91.566191 iter 50 value 83.980085 iter 60 value 83.492770 iter 70 value 83.336394 iter 80 value 83.336260 iter 90 value 83.335338 final value 83.335283 converged Fitting Repeat 5 # weights: 305 initial value 101.673742 iter 10 value 93.436018 iter 20 value 92.840407 iter 30 value 92.834475 iter 40 value 92.833380 iter 50 value 92.831625 final value 92.831443 converged Fitting Repeat 1 # weights: 507 initial value 107.465570 iter 10 value 92.121459 iter 20 value 91.525711 iter 30 value 85.842222 iter 40 value 83.993459 iter 50 value 83.992076 iter 60 value 83.991660 iter 70 value 83.986796 iter 80 value 81.971656 iter 90 value 80.278647 iter 100 value 79.273616 final value 79.273616 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 98.185290 iter 10 value 94.057563 iter 20 value 93.542051 iter 30 value 93.540694 final value 93.540683 converged Fitting Repeat 3 # weights: 507 initial value 96.445764 iter 10 value 93.748843 iter 20 value 93.714389 iter 30 value 93.709420 iter 40 value 93.706086 iter 50 value 90.424791 iter 60 value 87.271253 iter 70 value 87.257939 iter 80 value 87.257105 iter 90 value 87.094300 iter 100 value 86.146704 final value 86.146704 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 116.385047 iter 10 value 93.875653 iter 20 value 93.786431 iter 30 value 92.874464 iter 40 value 92.831774 iter 50 value 92.830434 iter 60 value 92.830364 final value 92.830267 converged Fitting Repeat 5 # weights: 507 initial value 96.614623 iter 10 value 93.519554 iter 20 value 93.237029 iter 30 value 93.233279 iter 40 value 93.230685 iter 50 value 93.229129 final value 93.229007 converged Fitting Repeat 1 # weights: 103 initial value 103.208750 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 100.990203 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 97.161921 final value 94.026542 converged Fitting Repeat 4 # weights: 103 initial value 100.324149 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 100.600839 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 99.269300 iter 10 value 93.776741 iter 10 value 93.776741 final value 93.776721 converged Fitting Repeat 2 # weights: 305 initial value 102.134432 final value 93.320225 converged Fitting Repeat 3 # weights: 305 initial value 100.606146 final value 94.026542 converged Fitting Repeat 4 # weights: 305 initial value 113.782504 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 112.226958 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 152.859187 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 97.202773 iter 10 value 93.788077 iter 10 value 93.788076 iter 10 value 93.788076 final value 93.788076 converged Fitting Repeat 3 # weights: 507 initial value 98.170316 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 98.280029 final value 94.472273 converged Fitting Repeat 5 # weights: 507 initial value 96.595904 final value 94.026542 converged Fitting Repeat 1 # weights: 103 initial value 99.693635 iter 10 value 94.258955 iter 20 value 93.514087 iter 30 value 84.112106 iter 40 value 82.842248 iter 50 value 82.188802 iter 60 value 81.390848 iter 70 value 81.101459 final value 81.101451 converged Fitting Repeat 2 # weights: 103 initial value 108.194278 iter 10 value 94.462105 iter 20 value 90.877996 iter 30 value 89.148644 iter 40 value 82.717173 iter 50 value 81.183219 iter 60 value 81.073184 final value 81.073035 converged Fitting Repeat 3 # weights: 103 initial value 97.631517 iter 10 value 94.529667 iter 20 value 91.606588 iter 30 value 86.985729 iter 40 value 81.760168 iter 50 value 80.980164 iter 60 value 80.729763 iter 70 value 80.667372 final value 80.667281 converged Fitting Repeat 4 # weights: 103 initial value 102.827267 iter 10 value 94.454270 iter 20 value 94.003491 iter 30 value 93.734396 iter 40 value 87.108040 iter 50 value 84.876004 iter 60 value 83.165828 iter 70 value 81.652419 iter 80 value 81.328895 iter 90 value 81.268677 iter 100 value 81.266830 final value 81.266830 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 102.824195 iter 10 value 94.486591 iter 20 value 93.630644 iter 30 value 86.550836 iter 40 value 85.159553 iter 50 value 84.966065 iter 60 value 84.616920 iter 70 value 80.494538 iter 80 value 79.770977 iter 90 value 79.279589 iter 100 value 79.110072 final value 79.110072 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 116.077085 iter 10 value 94.811475 iter 20 value 93.873807 iter 30 value 91.547651 iter 40 value 91.000369 iter 50 value 90.724977 iter 60 value 90.634248 iter 70 value 87.578794 iter 80 value 81.318312 iter 90 value 79.909994 iter 100 value 78.285164 final value 78.285164 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 106.521407 iter 10 value 94.280328 iter 20 value 89.946064 iter 30 value 89.627486 iter 40 value 86.038437 iter 50 value 82.026995 iter 60 value 80.800953 iter 70 value 79.953163 iter 80 value 79.617837 iter 90 value 79.511475 iter 100 value 79.284138 final value 79.284138 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 106.138477 iter 10 value 91.773348 iter 20 value 84.760175 iter 30 value 84.345387 iter 40 value 81.430605 iter 50 value 79.443315 iter 60 value 78.887244 iter 70 value 78.499346 iter 80 value 78.215950 iter 90 value 77.995237 iter 100 value 77.986165 final value 77.986165 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 100.676941 iter 10 value 94.247575 iter 20 value 83.941294 iter 30 value 82.473356 iter 40 value 80.065596 iter 50 value 78.703860 iter 60 value 78.351504 iter 70 value 78.145264 iter 80 value 77.949851 iter 90 value 77.920935 iter 100 value 77.916901 final value 77.916901 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.342944 iter 10 value 94.568899 iter 20 value 93.373501 iter 30 value 84.358663 iter 40 value 83.694549 iter 50 value 83.032393 iter 60 value 80.968168 iter 70 value 80.817083 iter 80 value 80.264198 iter 90 value 79.871907 iter 100 value 79.470245 final value 79.470245 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 130.822436 iter 10 value 94.755097 iter 20 value 92.619801 iter 30 value 89.056786 iter 40 value 83.569663 iter 50 value 82.668192 iter 60 value 79.884355 iter 70 value 78.677333 iter 80 value 78.260253 iter 90 value 77.979947 iter 100 value 77.690319 final value 77.690319 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 136.898828 iter 10 value 94.203966 iter 20 value 88.222691 iter 30 value 86.347524 iter 40 value 85.448298 iter 50 value 82.878054 iter 60 value 78.851260 iter 70 value 78.239423 iter 80 value 78.056617 iter 90 value 77.958912 iter 100 value 77.880108 final value 77.880108 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 109.065181 iter 10 value 94.249011 iter 20 value 85.069569 iter 30 value 82.505923 iter 40 value 81.252548 iter 50 value 80.735266 iter 60 value 80.559648 iter 70 value 80.491472 iter 80 value 79.251368 iter 90 value 77.747778 iter 100 value 77.424991 final value 77.424991 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 106.268095 iter 10 value 94.197397 iter 20 value 91.060463 iter 30 value 85.815025 iter 40 value 81.580773 iter 50 value 81.048282 iter 60 value 80.858566 iter 70 value 80.414797 iter 80 value 78.932101 iter 90 value 78.272608 iter 100 value 78.095311 final value 78.095311 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 116.637791 iter 10 value 94.452204 iter 20 value 93.316939 iter 30 value 83.125277 iter 40 value 81.055429 iter 50 value 79.378099 iter 60 value 79.201598 iter 70 value 79.092850 iter 80 value 78.758384 iter 90 value 78.236568 iter 100 value 77.922301 final value 77.922301 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 104.425733 final value 94.485758 converged Fitting Repeat 2 # weights: 103 initial value 107.208893 final value 94.485852 converged Fitting Repeat 3 # weights: 103 initial value 99.994020 iter 10 value 94.497913 final value 94.495304 converged Fitting Repeat 4 # weights: 103 initial value 105.677194 final value 94.485786 converged Fitting Repeat 5 # weights: 103 initial value 96.621485 iter 10 value 94.486116 iter 20 value 94.484231 final value 94.484221 converged Fitting Repeat 1 # weights: 305 initial value 110.497664 iter 10 value 94.488831 iter 20 value 94.484351 iter 30 value 93.788245 final value 93.788242 converged Fitting Repeat 2 # weights: 305 initial value 95.663927 iter 10 value 91.628317 iter 20 value 82.363594 iter 30 value 82.308127 iter 40 value 82.306394 iter 50 value 80.307968 iter 60 value 80.150931 iter 70 value 80.150483 iter 80 value 80.149327 iter 90 value 80.146818 iter 100 value 80.146715 final value 80.146715 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 98.199036 iter 10 value 94.489600 iter 20 value 94.313028 iter 30 value 94.031423 iter 40 value 94.027137 final value 94.027084 converged Fitting Repeat 4 # weights: 305 initial value 98.790140 iter 10 value 93.794539 iter 20 value 93.552440 final value 93.322556 converged Fitting Repeat 5 # weights: 305 initial value 104.468692 iter 10 value 94.489166 iter 20 value 94.484337 iter 30 value 91.800078 iter 40 value 82.285656 iter 50 value 80.458518 iter 60 value 80.305311 iter 70 value 80.297044 iter 80 value 80.289682 iter 90 value 80.162457 iter 100 value 79.439811 final value 79.439811 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 105.096783 iter 10 value 94.491955 iter 20 value 93.559006 iter 30 value 93.309248 final value 93.308514 converged Fitting Repeat 2 # weights: 507 initial value 102.829066 iter 10 value 91.160800 iter 20 value 91.044369 iter 30 value 91.042551 iter 40 value 91.039500 iter 50 value 91.037211 final value 91.036790 converged Fitting Repeat 3 # weights: 507 initial value 99.987011 iter 10 value 94.250492 iter 20 value 92.347108 iter 30 value 91.943265 iter 40 value 91.934433 iter 50 value 91.933405 iter 60 value 91.872984 iter 70 value 82.944229 iter 80 value 81.263556 iter 90 value 80.885027 iter 100 value 80.880325 final value 80.880325 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 104.043550 iter 10 value 94.491163 iter 20 value 90.929021 iter 30 value 82.905387 iter 30 value 82.905387 iter 30 value 82.905387 final value 82.905387 converged Fitting Repeat 5 # weights: 507 initial value 99.465425 iter 10 value 94.492625 iter 20 value 84.294138 iter 30 value 82.908050 iter 40 value 82.905673 iter 50 value 81.771198 iter 60 value 81.576427 iter 70 value 81.249963 final value 81.235376 converged Fitting Repeat 1 # weights: 103 initial value 101.773656 iter 10 value 93.463582 iter 20 value 83.688434 final value 83.652697 converged Fitting Repeat 2 # weights: 103 initial value 103.349591 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.415325 final value 94.466823 converged Fitting Repeat 4 # weights: 103 initial value 98.831053 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 101.461598 final value 94.466822 converged Fitting Repeat 1 # weights: 305 initial value 104.452865 final value 94.466823 converged Fitting Repeat 2 # weights: 305 initial value 95.750991 final value 94.117498 converged Fitting Repeat 3 # weights: 305 initial value 106.671428 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 100.798090 iter 10 value 94.144481 iter 10 value 94.144481 iter 10 value 94.144481 final value 94.144481 converged Fitting Repeat 5 # weights: 305 initial value 111.794756 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 110.143361 iter 10 value 94.484211 iter 10 value 94.484211 iter 10 value 94.484211 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 101.431062 iter 10 value 86.377238 iter 20 value 81.863103 iter 30 value 81.769304 iter 40 value 81.763316 final value 81.762741 converged Fitting Repeat 3 # weights: 507 initial value 96.020537 final value 94.466823 converged Fitting Repeat 4 # weights: 507 initial value 106.807532 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 116.980104 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 98.105878 iter 10 value 91.767326 iter 20 value 86.736091 iter 30 value 83.153882 iter 40 value 82.536557 iter 50 value 82.508220 iter 60 value 82.476426 final value 82.476394 converged Fitting Repeat 2 # weights: 103 initial value 101.523246 iter 10 value 93.537815 iter 20 value 84.747353 iter 30 value 82.571396 iter 40 value 82.527407 iter 50 value 82.477477 final value 82.476394 converged Fitting Repeat 3 # weights: 103 initial value 98.494612 iter 10 value 94.453359 iter 20 value 94.173230 iter 30 value 92.449054 iter 40 value 92.338014 iter 50 value 91.947420 iter 60 value 87.061916 final value 87.052552 converged Fitting Repeat 4 # weights: 103 initial value 97.032296 iter 10 value 94.426233 iter 20 value 87.956546 iter 30 value 86.056576 iter 40 value 85.812284 iter 50 value 85.442109 iter 60 value 85.307006 iter 70 value 82.482755 final value 82.476394 converged Fitting Repeat 5 # weights: 103 initial value 101.348633 iter 10 value 94.531806 iter 20 value 94.272538 iter 30 value 87.240837 iter 40 value 83.510273 iter 50 value 82.708017 iter 60 value 81.931779 iter 70 value 81.843984 iter 80 value 81.795635 iter 90 value 81.761104 iter 100 value 81.677047 final value 81.677047 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 116.310785 iter 10 value 94.506205 iter 20 value 84.041445 iter 30 value 83.030503 iter 40 value 82.840446 iter 50 value 82.267149 iter 60 value 82.178568 iter 70 value 82.147685 iter 80 value 81.981648 iter 90 value 81.016400 iter 100 value 80.825224 final value 80.825224 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.771530 iter 10 value 94.540972 iter 20 value 94.275739 iter 30 value 91.544499 iter 40 value 84.441581 iter 50 value 83.507889 iter 60 value 83.223649 iter 70 value 83.023186 iter 80 value 82.821303 iter 90 value 82.477319 iter 100 value 82.070628 final value 82.070628 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 118.620802 iter 10 value 94.395270 iter 20 value 89.656255 iter 30 value 85.201076 iter 40 value 82.608612 iter 50 value 81.935025 iter 60 value 81.567209 iter 70 value 81.191571 iter 80 value 80.353530 iter 90 value 80.176552 iter 100 value 80.143223 final value 80.143223 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 118.148097 iter 10 value 94.411981 iter 20 value 91.354111 iter 30 value 86.471224 iter 40 value 83.376322 iter 50 value 82.628865 iter 60 value 82.028397 iter 70 value 81.765872 iter 80 value 80.928506 iter 90 value 80.247371 iter 100 value 80.028551 final value 80.028551 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.081295 iter 10 value 94.453490 iter 20 value 90.356563 iter 30 value 86.534347 iter 40 value 83.674183 iter 50 value 81.314965 iter 60 value 80.958437 iter 70 value 80.733962 iter 80 value 80.515113 iter 90 value 80.287924 iter 100 value 80.186664 final value 80.186664 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 110.432248 iter 10 value 94.397535 iter 20 value 88.800328 iter 30 value 86.578256 iter 40 value 85.553814 iter 50 value 84.756161 iter 60 value 83.596767 iter 70 value 82.132545 iter 80 value 81.309490 iter 90 value 80.916119 iter 100 value 80.772577 final value 80.772577 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 107.416126 iter 10 value 94.455212 iter 20 value 90.332819 iter 30 value 84.629131 iter 40 value 82.765583 iter 50 value 82.076775 iter 60 value 82.019717 iter 70 value 81.650406 iter 80 value 81.101671 iter 90 value 80.836377 iter 100 value 80.533582 final value 80.533582 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 118.555140 iter 10 value 94.984748 iter 20 value 93.899440 iter 30 value 90.523657 iter 40 value 89.558420 iter 50 value 84.499005 iter 60 value 82.775646 iter 70 value 82.269943 iter 80 value 82.199764 iter 90 value 82.015373 iter 100 value 81.117045 final value 81.117045 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.229931 iter 10 value 95.221142 iter 20 value 87.222231 iter 30 value 85.426136 iter 40 value 83.057045 iter 50 value 82.430884 iter 60 value 82.098502 iter 70 value 81.537330 iter 80 value 81.232970 iter 90 value 81.110535 iter 100 value 81.051503 final value 81.051503 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 115.809646 iter 10 value 95.129375 iter 20 value 94.383070 iter 30 value 84.726303 iter 40 value 82.812281 iter 50 value 82.456569 iter 60 value 82.174088 iter 70 value 81.606374 iter 80 value 81.313031 iter 90 value 80.610162 iter 100 value 80.371027 final value 80.371027 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.902648 iter 10 value 94.485868 iter 20 value 94.484227 final value 94.484221 converged Fitting Repeat 2 # weights: 103 initial value 103.660311 final value 94.485796 converged Fitting Repeat 3 # weights: 103 initial value 102.828921 final value 94.485814 converged Fitting Repeat 4 # weights: 103 initial value 110.917218 iter 10 value 94.486122 final value 94.484283 converged Fitting Repeat 5 # weights: 103 initial value 101.509025 iter 10 value 94.468664 iter 20 value 94.467036 iter 30 value 83.349150 iter 40 value 82.484291 iter 50 value 81.767838 iter 60 value 81.766871 iter 70 value 81.633843 iter 80 value 80.662274 final value 80.647066 converged Fitting Repeat 1 # weights: 305 initial value 120.830663 iter 10 value 94.260026 iter 20 value 94.258417 iter 30 value 92.667900 iter 40 value 83.572261 iter 50 value 81.326477 final value 81.326349 converged Fitting Repeat 2 # weights: 305 initial value 101.528013 iter 10 value 94.488117 iter 20 value 94.458664 iter 30 value 94.002083 iter 40 value 93.693816 iter 50 value 93.693343 iter 60 value 93.693100 iter 70 value 93.691411 iter 80 value 93.456397 iter 90 value 85.079352 iter 100 value 85.058149 final value 85.058149 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.699078 iter 10 value 94.492090 iter 20 value 94.124751 iter 30 value 87.162754 iter 40 value 86.637306 iter 50 value 86.636735 iter 60 value 83.063317 iter 70 value 82.712286 iter 80 value 81.785203 iter 90 value 81.682772 iter 100 value 81.638849 final value 81.638849 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.352857 iter 10 value 94.488583 iter 20 value 94.396918 iter 30 value 94.147617 iter 40 value 94.147367 iter 50 value 94.146262 iter 60 value 94.118528 final value 94.117606 converged Fitting Repeat 5 # weights: 305 initial value 110.885664 iter 10 value 94.487957 iter 20 value 94.483444 final value 94.466916 converged Fitting Repeat 1 # weights: 507 initial value 103.634940 iter 10 value 94.492031 iter 20 value 94.329776 iter 30 value 87.143127 iter 40 value 82.228154 iter 50 value 81.170572 iter 60 value 81.037011 iter 70 value 81.011768 iter 80 value 81.003834 iter 90 value 80.952780 iter 100 value 80.189004 final value 80.189004 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 103.140075 iter 10 value 87.350788 iter 20 value 87.295288 iter 30 value 86.972634 iter 40 value 86.551776 iter 50 value 84.987136 iter 60 value 82.392596 iter 70 value 80.997790 iter 80 value 80.031892 iter 90 value 79.952609 iter 100 value 79.952223 final value 79.952223 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 98.026721 iter 10 value 94.475478 iter 20 value 91.414518 iter 30 value 85.100639 iter 40 value 85.094630 iter 50 value 82.809956 iter 60 value 82.099325 iter 70 value 82.088417 iter 80 value 81.044830 final value 81.044799 converged Fitting Repeat 4 # weights: 507 initial value 109.273472 iter 10 value 94.474705 iter 20 value 94.467419 iter 30 value 93.277708 iter 40 value 84.344405 iter 50 value 84.239924 iter 60 value 84.238121 iter 70 value 84.232304 iter 80 value 83.979433 iter 90 value 83.824130 iter 100 value 83.817196 final value 83.817196 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 99.307952 iter 10 value 94.488201 iter 20 value 91.869976 iter 30 value 91.078266 iter 40 value 87.167391 iter 50 value 82.185781 iter 60 value 81.923317 iter 70 value 80.894004 iter 80 value 80.777147 iter 90 value 80.775849 iter 100 value 80.774852 final value 80.774852 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.536379 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 99.272118 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 97.359159 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 95.544843 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 96.839653 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 98.440923 final value 93.582418 converged Fitting Repeat 2 # weights: 305 initial value 98.124562 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 110.699601 iter 10 value 93.523810 iter 10 value 93.523810 iter 10 value 93.523810 final value 93.523810 converged Fitting Repeat 4 # weights: 305 initial value 98.294692 final value 94.033149 converged Fitting Repeat 5 # weights: 305 initial value 98.631701 iter 10 value 88.430025 iter 20 value 87.713932 iter 30 value 87.665601 iter 30 value 87.665600 iter 30 value 87.665600 final value 87.665600 converged Fitting Repeat 1 # weights: 507 initial value 98.946708 iter 10 value 93.582419 iter 10 value 93.582418 iter 10 value 93.582418 final value 93.582418 converged Fitting Repeat 2 # weights: 507 initial value 118.715916 iter 10 value 93.570482 final value 93.569788 converged Fitting Repeat 3 # weights: 507 initial value 108.362063 final value 93.356642 converged Fitting Repeat 4 # weights: 507 initial value 95.061335 iter 10 value 86.310073 iter 20 value 83.995001 iter 30 value 83.972688 iter 40 value 83.972546 iter 50 value 83.972479 final value 83.972454 converged Fitting Repeat 5 # weights: 507 initial value 102.101809 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 101.514114 iter 10 value 94.082897 iter 20 value 94.052649 iter 30 value 92.224342 iter 40 value 88.848472 iter 50 value 86.495745 iter 60 value 86.213563 iter 70 value 86.159007 final value 86.158457 converged Fitting Repeat 2 # weights: 103 initial value 99.888737 iter 10 value 94.023420 iter 20 value 88.250027 iter 30 value 86.530909 iter 40 value 86.428989 final value 86.408552 converged Fitting Repeat 3 # weights: 103 initial value 104.269028 iter 10 value 94.056713 iter 20 value 88.038668 iter 30 value 86.385117 iter 40 value 86.307613 iter 50 value 86.095650 iter 60 value 85.514487 iter 70 value 85.361404 iter 80 value 84.773697 iter 90 value 84.361910 final value 84.359656 converged Fitting Repeat 4 # weights: 103 initial value 97.231952 iter 10 value 93.076013 iter 20 value 90.908054 iter 30 value 89.255635 iter 40 value 87.363594 iter 50 value 82.865990 iter 60 value 81.708183 iter 70 value 81.120930 final value 81.114774 converged Fitting Repeat 5 # weights: 103 initial value 117.468544 iter 10 value 94.098160 iter 20 value 93.995322 iter 30 value 89.301898 iter 40 value 88.824257 iter 50 value 87.873583 iter 60 value 87.484782 iter 70 value 86.686502 iter 80 value 85.593649 iter 90 value 85.235474 iter 100 value 85.030462 final value 85.030462 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 109.138845 iter 10 value 94.046774 iter 20 value 93.526602 iter 30 value 91.506607 iter 40 value 86.815529 iter 50 value 84.553029 iter 60 value 82.989200 iter 70 value 82.634043 iter 80 value 82.431570 iter 90 value 81.850101 iter 100 value 80.947291 final value 80.947291 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.605291 iter 10 value 93.544249 iter 20 value 86.106928 iter 30 value 84.722352 iter 40 value 84.553318 iter 50 value 84.445313 iter 60 value 83.537532 iter 70 value 81.997922 iter 80 value 81.013568 iter 90 value 80.720607 iter 100 value 80.160739 final value 80.160739 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.226135 iter 10 value 93.734518 iter 20 value 93.644700 iter 30 value 90.573841 iter 40 value 87.249989 iter 50 value 86.081702 iter 60 value 83.693369 iter 70 value 82.962780 iter 80 value 82.540279 iter 90 value 81.453819 iter 100 value 80.819617 final value 80.819617 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 107.449495 iter 10 value 93.968569 iter 20 value 92.829130 iter 30 value 88.202035 iter 40 value 85.814695 iter 50 value 84.092503 iter 60 value 82.397596 iter 70 value 80.993257 iter 80 value 80.156317 iter 90 value 79.779622 iter 100 value 79.483294 final value 79.483294 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 119.433911 iter 10 value 94.088486 iter 20 value 92.777918 iter 30 value 86.609626 iter 40 value 84.939462 iter 50 value 83.743857 iter 60 value 82.295228 iter 70 value 80.650258 iter 80 value 80.442288 iter 90 value 80.142537 iter 100 value 80.079935 final value 80.079935 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 112.078608 iter 10 value 95.520282 iter 20 value 94.098516 iter 30 value 93.873295 iter 40 value 93.472171 iter 50 value 93.350470 iter 60 value 91.138610 iter 70 value 85.938575 iter 80 value 82.726710 iter 90 value 82.210888 iter 100 value 81.138258 final value 81.138258 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 107.316935 iter 10 value 94.015122 iter 20 value 93.580576 iter 30 value 91.965617 iter 40 value 89.948324 iter 50 value 83.150435 iter 60 value 81.638382 iter 70 value 80.767286 iter 80 value 80.282914 iter 90 value 79.877498 iter 100 value 79.821188 final value 79.821188 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 119.359864 iter 10 value 94.063490 iter 20 value 88.151104 iter 30 value 86.621157 iter 40 value 84.708524 iter 50 value 81.645599 iter 60 value 80.657206 iter 70 value 80.221976 iter 80 value 79.959165 iter 90 value 79.876095 iter 100 value 79.735471 final value 79.735471 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 113.161639 iter 10 value 94.564540 iter 20 value 93.746395 iter 30 value 86.136990 iter 40 value 82.777114 iter 50 value 81.454559 iter 60 value 80.588695 iter 70 value 80.339425 iter 80 value 80.306871 iter 90 value 80.291095 iter 100 value 80.276988 final value 80.276988 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 104.206933 iter 10 value 94.008379 iter 20 value 90.713204 iter 30 value 90.330818 iter 40 value 86.526391 iter 50 value 85.510303 iter 60 value 84.031059 iter 70 value 83.957745 iter 80 value 83.814346 iter 90 value 82.987990 iter 100 value 81.019795 final value 81.019795 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.776904 iter 10 value 93.549276 iter 20 value 93.483411 final value 93.482319 converged Fitting Repeat 2 # weights: 103 initial value 101.651404 iter 10 value 94.054694 final value 94.052919 converged Fitting Repeat 3 # weights: 103 initial value 93.594116 iter 10 value 88.476144 final value 88.467041 converged Fitting Repeat 4 # weights: 103 initial value 111.185980 iter 10 value 94.054702 iter 20 value 93.990358 iter 30 value 93.274860 final value 93.270038 converged Fitting Repeat 5 # weights: 103 initial value 100.153528 final value 94.054423 converged Fitting Repeat 1 # weights: 305 initial value 102.723481 iter 10 value 89.828819 iter 20 value 88.470251 iter 30 value 88.465261 iter 40 value 88.464560 iter 50 value 86.283815 iter 60 value 86.001835 iter 70 value 85.994549 final value 85.994533 converged Fitting Repeat 2 # weights: 305 initial value 99.657958 iter 10 value 94.057366 iter 20 value 94.052893 iter 30 value 88.467495 final value 88.466300 converged Fitting Repeat 3 # weights: 305 initial value 108.533512 iter 10 value 93.492608 iter 20 value 93.486089 iter 30 value 93.287441 final value 93.284642 converged Fitting Repeat 4 # weights: 305 initial value 94.698638 iter 10 value 94.037788 iter 20 value 87.701715 iter 30 value 86.919540 iter 40 value 86.915979 final value 86.915973 converged Fitting Repeat 5 # weights: 305 initial value 116.484408 iter 10 value 93.361365 iter 20 value 92.863502 iter 30 value 90.361388 iter 40 value 90.360481 iter 50 value 90.360363 final value 90.360330 converged Fitting Repeat 1 # weights: 507 initial value 100.326174 iter 10 value 93.591074 iter 20 value 93.584988 final value 93.583511 converged Fitting Repeat 2 # weights: 507 initial value 102.719952 iter 10 value 93.549507 iter 20 value 93.354611 iter 30 value 93.352952 iter 40 value 93.350529 iter 50 value 93.336331 iter 60 value 93.274294 iter 70 value 93.273381 iter 80 value 93.270384 final value 93.270125 converged Fitting Repeat 3 # weights: 507 initial value 104.662347 iter 10 value 94.054518 iter 20 value 94.014597 iter 30 value 94.014308 final value 94.014186 converged Fitting Repeat 4 # weights: 507 initial value 95.532290 iter 10 value 93.148879 iter 20 value 92.123073 iter 30 value 91.902086 iter 40 value 91.540418 iter 50 value 91.439546 iter 60 value 91.398490 iter 70 value 91.397302 final value 91.397082 converged Fitting Repeat 5 # weights: 507 initial value 102.189240 iter 10 value 93.590734 iter 20 value 93.584667 final value 93.584583 converged Fitting Repeat 1 # weights: 103 initial value 120.989180 final value 117.891785 converged Fitting Repeat 2 # weights: 103 initial value 126.088828 final value 117.891835 converged Fitting Repeat 3 # weights: 103 initial value 118.304161 final value 117.760342 converged Fitting Repeat 4 # weights: 103 initial value 134.078694 final value 117.891857 converged Fitting Repeat 5 # weights: 103 initial value 122.079792 final value 117.891912 converged svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Wed Apr 12 06:56:43 2023 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 44.200 2.147 85.836
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 33.841 | 0.663 | 35.611 | |
FreqInteractors | 0.260 | 0.008 | 0.269 | |
calculateAAC | 0.034 | 0.013 | 0.046 | |
calculateAutocor | 0.318 | 0.031 | 0.350 | |
calculateCTDC | 0.084 | 0.000 | 0.084 | |
calculateCTDD | 0.665 | 0.004 | 0.669 | |
calculateCTDT | 0.236 | 0.012 | 0.247 | |
calculateCTriad | 0.400 | 0.008 | 0.408 | |
calculateDC | 0.088 | 0.000 | 0.089 | |
calculateF | 0.323 | 0.004 | 0.328 | |
calculateKSAAP | 0.097 | 0.000 | 0.098 | |
calculateQD_Sm | 1.813 | 0.020 | 2.053 | |
calculateTC | 1.755 | 0.044 | 1.799 | |
calculateTC_Sm | 0.226 | 0.000 | 0.226 | |
corr_plot | 34.246 | 0.824 | 35.553 | |
enrichfindP | 0.450 | 0.060 | 51.329 | |
enrichfind_hp | 0.048 | 0.003 | 2.862 | |
enrichplot | 0.361 | 0.020 | 0.382 | |
filter_missing_values | 0.001 | 0.000 | 0.001 | |
getFASTA | 0.099 | 0.012 | 5.003 | |
getHPI | 0.001 | 0.000 | 0.001 | |
get_negativePPI | 0.002 | 0.002 | 0.003 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.000 | 0.001 | 0.002 | |
plotPPI | 0.103 | 0.000 | 0.103 | |
pred_ensembel | 14.083 | 0.474 | 11.038 | |
var_imp | 37.092 | 1.040 | 38.135 | |