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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:hpAnnot.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings hpAnnot_1.1.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-data-annotation/meat/hpAnnot.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘hpAnnot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘hpAnnot’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hpAnnot’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 239.6Mb
  sub-directories of 1Mb or more:
    extdata  239.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: ‘AnnotationHub’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘hpAnnot-vignette.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘hpAnnot-vignette.Rmd’ using rmarkdown

Quitting from lines 42-50 [unnamed-chunk-1] (hpAnnot-vignette.Rmd)
Error: processing vignette 'hpAnnot-vignette.Rmd' failed with diagnostics:
there is no package called 'AnnotationHub'
--- failed re-building ‘hpAnnot-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘hpAnnot-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.17-data-annotation/meat/hpAnnot.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL hpAnnot
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘hpAnnot’ ...
** using staged installation
** inst
** help
No man pages found in package  ‘hpAnnot’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hpAnnot)