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This page was generated on 2023-01-02 09:00:32 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for granulator on palomino5


To the developers/maintainers of the granulator package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 839/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
granulator 1.7.0  (landing page)
Sabina Pfister
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/granulator
git_branch: master
git_last_commit: a998266
git_last_commit_date: 2022-11-01 11:24:44 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: granulator
Version: 1.7.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:granulator.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings granulator_1.7.0.tar.gz
StartedAt: 2022-12-29 00:19:22 -0500 (Thu, 29 Dec 2022)
EndedAt: 2022-12-29 00:25:18 -0500 (Thu, 29 Dec 2022)
EllapsedTime: 356.4 seconds
RetCode: 0
Status:   OK  
CheckDir: granulator.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:granulator.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings granulator_1.7.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/granulator.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'granulator/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'granulator' version '1.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'granulator' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
deconvolute      40.62   0.12   40.75
plot_regress     28.36   0.16   28.75
plot_deconvolute 25.36   0.03   25.39
benchmark        24.87   0.22   25.09
correlate        24.55   0.13   24.67
plot_proportions 24.34   0.11   24.45
plot_benchmark   24.27   0.07   24.34
plot_correlate   23.97   0.05   24.02
plot_similarity   5.55   0.00    5.61
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

granulator.Rcheck/00install.out

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### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL granulator
###
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'granulator' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (granulator)

Tests output

granulator.Rcheck/tests/testthat.Rout


R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library("testthat")
> library("granulator")
> 
> test_check("granulator")
[ FAIL 0 | WARN 23 | SKIP 0 | PASS 137 ]

[ FAIL 0 | WARN 23 | SKIP 0 | PASS 137 ]
> 
> proc.time()
   user  system elapsed 
  52.35    0.71   56.76 

Example timings

granulator.Rcheck/granulator-Ex.timings

nameusersystemelapsed
benchmark24.87 0.2225.09
correlate24.55 0.1324.67
deconvolute40.62 0.1240.75
get_TPM000
get_decon_methods000
load_ABIS0.010.020.04
plot_benchmark24.27 0.0724.34
plot_correlate23.97 0.0524.02
plot_deconvolute25.36 0.0325.39
plot_proportions24.34 0.1124.45
plot_regress28.36 0.1628.75
plot_similarity5.550.005.61