Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-02 09:00:24 -0500 (Mon, 02 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
palomino5 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" | 4165 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the consensusSeekeR package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 397/2158 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
consensusSeekeR 1.27.0 (landing page) Astrid Deschenes
| palomino5 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ||||||||
Package: consensusSeekeR |
Version: 1.27.0 |
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:consensusSeekeR.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings consensusSeekeR_1.27.0.tar.gz |
StartedAt: 2022-12-28 22:46:29 -0500 (Wed, 28 Dec 2022) |
EndedAt: 2022-12-28 22:49:40 -0500 (Wed, 28 Dec 2022) |
EllapsedTime: 190.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: consensusSeekeR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:consensusSeekeR.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings consensusSeekeR_1.27.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/consensusSeekeR.Rcheck' * using R Under development (unstable) (2022-12-25 r83502 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 10.4.0 GNU Fortran (GCC) 10.4.0 * running under: Windows Server x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'consensusSeekeR/DESCRIPTION' ... OK * this is package 'consensusSeekeR' version '1.27.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'consensusSeekeR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
consensusSeekeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL consensusSeekeR ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library' * installing *source* package 'consensusSeekeR' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (consensusSeekeR)
consensusSeekeR.Rcheck/tests/runTests.Rout
R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > ## Run all tests present in the package > BiocGenerics:::testPackage("consensusSeekeR") Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Attaching package: 'S4Vectors' The following objects are masked from 'package:base': I, expand.grid, unname Attaching package: 'IRanges' The following object is masked from 'package:grDevices': windows RUNIT TEST PROTOCOL -- Wed Dec 28 22:49:27 2022 *********************************************** Number of test functions: 56 Number of errors: 0 Number of failures: 0 1 Test Suite : consensusSeekeR RUnit Tests - 56 test functions, 0 errors, 0 failures Number of test functions: 56 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 11.03 0.39 11.42
consensusSeekeR.Rcheck/consensusSeekeR-Ex.timings
name | user | system | elapsed | |
A549_CTCF_MYJ_NarrowPeaks_partial | 0.70 | 0.08 | 0.79 | |
A549_CTCF_MYJ_Peaks_partial | 0.27 | 0.02 | 0.28 | |
A549_CTCF_MYN_NarrowPeaks_partial | 0.23 | 0.01 | 0.25 | |
A549_CTCF_MYN_Peaks_partial | 0.28 | 0.02 | 0.30 | |
A549_FOSL2_01_NarrowPeaks_partial | 0.24 | 0.00 | 0.23 | |
A549_FOSL2_01_Peaks_partial | 0.28 | 0.01 | 0.30 | |
A549_FOXA1_01_NarrowPeaks_partial | 0.28 | 0.02 | 0.30 | |
A549_FOXA1_01_Peaks_partial | 0.37 | 0.02 | 0.39 | |
A549_NR3C1_CFQ_NarrowPeaks_partial | 0.22 | 0.03 | 0.25 | |
A549_NR3C1_CFQ_Peaks_partial | 0.27 | 0.03 | 0.30 | |
A549_NR3C1_CFR_NarrowPeaks_partial | 0.25 | 0.00 | 0.25 | |
A549_NR3C1_CFR_Peaks_partial | 0.20 | 0.03 | 0.23 | |
A549_NR3C1_CFS_NarrowPeaks_partial | 0.56 | 0.02 | 0.58 | |
A549_NR3C1_CFS_Peaks_partial | 0.58 | 0.00 | 0.58 | |
NOrMAL_nucleosome_positions | 0.47 | 0.01 | 0.48 | |
NOrMAL_nucleosome_ranges | 0.42 | 0.03 | 0.45 | |
NucPosSimulator_nucleosome_positions | 0.50 | 0.03 | 0.53 | |
NucPosSimulator_nucleosome_ranges | 0.45 | 0.03 | 0.49 | |
PING_nucleosome_positions | 0.27 | 0.05 | 0.31 | |
PING_nucleosome_ranges | 0.31 | 0.02 | 0.33 | |
findConsensusPeakRegions | 0.53 | 0.03 | 0.56 | |
findConsensusPeakRegionsValidation | 0.07 | 0.01 | 0.08 | |
readNarrowPeakFile | 0.07 | 0.00 | 0.08 | |