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This page was generated on 2023-01-02 09:00:33 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
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INSTALL results for Harshlight on palomino5


To the developers/maintainers of the Harshlight package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 876/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Harshlight 1.71.0  (landing page)
Maurizio Pellegrino
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/Harshlight
git_branch: master
git_last_commit: 6f7c6ad
git_last_commit_date: 2022-11-01 10:41:42 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  

Summary

Package: Harshlight
Version: 1.71.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL Harshlight
StartedAt: 2022-12-28 15:37:01 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 15:37:20 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 19.1 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL Harshlight
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* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'Harshlight' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG     -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c Harshlight.c -o Harshlight.o
Harshlight.c: In function 'extended_defects':
Harshlight.c:564:20: warning: variable 'p_num_points' set but not used [-Wunused-but-set-variable]
  564 |   int num_points, *p_num_points; //number of points inside the median kernel
      |                    ^~~~~~~~~~~~
Harshlight.c: In function 'image_dilation':
Harshlight.c:948:10: warning: variable 'cell_value' set but not used [-Wunused-but-set-variable]
  948 |   double cell_value;
      |          ^~~~~~~~~~
Harshlight.c: In function 'norm':
Harshlight.c:1316:27: warning: unused variable 'sorted2' [-Wunused-variable]
 1316 |   double *sorted; double *sorted2;
      |                           ^~~~~~~
Harshlight.c: In function 'report_overall_header':
Harshlight.c:1471:26: warning: unknown conversion type character ')' in format [-Wformat=]
 1471 |   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br);
      |                          ^
Harshlight.c:1474:26: warning: unknown conversion type character ')' in format [-Wformat=]
 1474 |   PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr);
      |                          ^
Harshlight.c: In function 'chip_summary':
Harshlight.c:1532:107: warning: unknown conversion type character ')' in format [-Wformat=]
 1532 |   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
      |                                                                                                           ^
Harshlight.c:1542:26: warning: unknown conversion type character ')' in format [-Wformat=]
 1542 |   PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c);
      |                          ^
Harshlight.c:1543:26: warning: unknown conversion type character ')' in format [-Wformat=]
 1543 |   PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d);
      |                          ^
Harshlight.c: In function 'extended_stop':
Harshlight.c:1555:107: warning: unknown conversion type character ')' in format [-Wformat=]
 1555 |   PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var);
      |                                                                                                           ^
gcc -shared -s -static-libgcc -o Harshlight.dll tmp.def Harshlight.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-Harshlight/00new/Harshlight/libs/x64
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Harshlight)